Wall clock time and date at job start Tue Mar 31 2020 12:18:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53005 * 109.46666 * 2 1 4 4 C 1.53001 * 109.46622 * 180.02562 * 3 2 1 5 5 N 1.46501 * 109.46742 * 179.97438 * 4 3 2 6 6 C 1.36932 * 120.00469 * 275.65877 * 5 4 3 7 7 H 1.08001 * 120.00213 * 34.00493 * 6 5 4 8 8 C 1.38810 * 120.00207 * 214.01256 * 6 5 4 9 9 N 1.31622 * 119.99912 * 22.90481 * 8 6 5 10 10 Si 1.86795 * 120.00123 * 202.90357 * 8 6 5 11 11 H 1.48504 * 109.47164 * 90.00031 * 10 8 6 12 12 H 1.48510 * 109.47120 * 209.99815 * 10 8 6 13 13 H 1.48502 * 109.47240 * 329.99872 * 10 8 6 14 14 C 1.46504 * 119.99799 * 95.65376 * 5 4 3 15 15 C 1.50699 * 109.47295 * 270.00214 * 14 5 4 16 16 C 1.38288 * 119.94047 * 270.25263 * 15 14 5 17 17 C 1.38125 * 120.05263 * 180.25866 * 16 15 14 18 18 C 1.38750 * 119.94235 * 359.48828 * 17 16 15 19 19 O 1.35898 * 120.05492 * 180.27867 * 18 17 16 20 20 C 1.38712 * 119.89177 * 0.25786 * 18 17 16 21 21 C 1.50694 * 120.03149 * 180.02562 * 20 18 17 22 22 F 1.39899 * 109.47724 * 180.02562 * 21 20 18 23 23 F 1.39904 * 109.47181 * 300.00355 * 21 20 18 24 24 F 1.39908 * 109.47150 * 59.99798 * 21 20 18 25 25 C 1.38166 * 119.93942 * 359.97438 * 20 18 17 26 26 H 1.09006 * 109.46674 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.46967 * 299.99659 * 1 2 3 28 28 H 1.08990 * 109.47721 * 60.00163 * 1 2 3 29 29 H 1.09002 * 109.46603 * 240.00007 * 2 1 3 30 30 H 1.08993 * 109.47227 * 119.99932 * 2 1 3 31 31 H 1.09000 * 109.47129 * 60.00028 * 3 2 1 32 32 H 1.09001 * 109.46949 * 299.99846 * 3 2 1 33 33 H 1.09006 * 109.47280 * 60.00176 * 4 3 2 34 34 H 1.08993 * 109.46958 * 299.99740 * 4 3 2 35 35 H 0.97005 * 120.00035 * 180.02562 * 9 8 6 36 36 H 1.09003 * 109.46611 * 149.99630 * 14 5 4 37 37 H 1.09008 * 109.46995 * 30.00338 * 14 5 4 38 38 H 1.07999 * 119.97745 * 0.02562 * 16 15 14 39 39 H 1.07999 * 120.02829 * 179.76750 * 17 16 15 40 40 H 0.96702 * 113.99903 * 89.99989 * 19 18 17 41 41 H 1.08003 * 119.96830 * 179.97438 * 25 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 -0.0006 5 7 4.0582 2.8238 -0.0013 6 6 4.1757 3.5080 -1.1815 7 1 3.4713 3.3310 -1.9809 8 6 5.2002 4.4292 -1.3508 9 7 6.2912 4.3418 -0.6197 10 14 5.0307 5.7927 -2.6162 11 1 4.4029 6.9803 -1.9831 12 1 6.3742 6.1591 -3.1323 13 1 4.1802 5.3229 -3.7393 14 6 4.4207 3.4731 1.2610 15 6 3.2120 4.1670 1.8343 16 6 2.9455 5.4811 1.4961 17 6 1.8413 6.1210 2.0243 18 6 0.9933 5.4409 2.8866 19 8 -0.0969 6.0665 3.4032 20 6 1.2600 4.1211 3.2201 21 6 0.3408 3.3792 4.1559 22 9 0.8145 2.0756 4.3388 23 9 0.3007 4.0377 5.3896 24 9 -0.9460 3.3357 3.6084 25 6 2.3685 3.4870 2.6928 26 1 -0.3633 -1.0278 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5137 -0.8899 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 1.6766 1.9564 0.8900 32 1 1.6766 1.9564 -0.8900 33 1 3.9330 0.9289 -0.8909 34 1 3.9336 0.9287 0.8891 35 1 7.0071 4.9857 -0.7377 36 1 5.2081 4.2049 1.0801 37 1 4.7774 2.7225 1.9664 38 1 3.6033 6.0088 0.8213 39 1 1.6356 7.1485 1.7629 40 1 -0.8946 5.9758 2.8642 41 1 2.5768 2.4596 2.9525 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001231525735.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:18:45 Heat of formation + Delta-G solvation = -165.494600 kcal Electronic energy + Delta-G solvation = -28090.580870 eV Core-core repulsion = 23748.794931 eV Total energy + Delta-G solvation = -4341.785939 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.134 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -49.96266 -47.50441 -47.40713 -39.64860 -37.21786 -35.86520 -34.12296 -31.69133 -31.51390 -30.28976 -27.93263 -25.78436 -25.46996 -23.89211 -22.18960 -21.62323 -20.65277 -20.21743 -18.62119 -18.29110 -18.17030 -17.36817 -16.67044 -15.52513 -15.43999 -14.92445 -14.83449 -14.37669 -14.31547 -14.09753 -13.88392 -13.75767 -13.70388 -13.62384 -13.60259 -13.49978 -13.23401 -12.40320 -12.33559 -12.15139 -11.98249 -11.87681 -11.46782 -11.25649 -11.08577 -10.77418 -10.65478 -10.52237 -10.43444 -10.34948 -10.14052 -10.01801 -9.80837 -8.87644 -8.63265 -8.15987 -6.77729 -5.94721 -3.47561 1.25284 1.54608 2.87612 3.25043 3.35367 3.36167 3.75910 3.93046 4.21753 4.29489 4.36267 4.64274 5.12687 5.13227 5.26262 5.36536 5.51628 5.57871 5.64512 5.66987 5.74327 5.92410 5.93190 6.09139 6.13817 6.26738 6.32285 6.33197 6.43259 6.48865 6.55706 6.58677 6.68855 6.91657 7.03554 7.09990 7.14031 7.49554 7.65828 7.69515 8.34361 9.01962 9.65244 10.21353 11.05197 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.012286 B = 0.005542 C = 0.004396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2278.476172 B = 5051.255832 C = 6367.564637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.122 4.122 3 C -0.140 4.140 4 C 0.147 3.853 5 N -0.575 5.575 6 C -0.252 4.252 7 H 0.063 0.937 8 C 0.010 3.990 9 N -0.883 5.883 10 Si 0.892 3.108 11 H -0.285 1.285 12 H -0.290 1.290 13 H -0.277 1.277 14 C 0.168 3.832 15 C -0.076 4.076 16 C -0.053 4.053 17 C -0.149 4.149 18 C 0.128 3.872 19 O -0.496 6.496 20 C -0.217 4.217 21 C 0.515 3.485 22 F -0.180 7.180 23 F -0.176 7.176 24 F -0.184 7.184 25 C -0.061 4.061 26 H 0.046 0.954 27 H 0.049 0.951 28 H 0.050 0.950 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.054 0.946 32 H 0.056 0.944 33 H 0.047 0.953 34 H 0.036 0.964 35 H 0.257 0.743 36 H 0.113 0.887 37 H 0.038 0.962 38 H 0.134 0.866 39 H 0.130 0.870 40 H 0.389 0.611 41 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.169 -1.629 6.369 12.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.161 4.161 3 C -0.180 4.180 4 C 0.021 3.979 5 N -0.292 5.292 6 C -0.382 4.382 7 H 0.081 0.919 8 C -0.190 4.190 9 N -0.525 5.525 10 Si 0.722 3.278 11 H -0.212 1.212 12 H -0.216 1.216 13 H -0.202 1.202 14 C 0.041 3.959 15 C -0.079 4.079 16 C -0.072 4.072 17 C -0.167 4.167 18 C 0.082 3.918 19 O -0.306 6.306 20 C -0.219 4.219 21 C 0.461 3.539 22 F -0.162 7.162 23 F -0.158 7.158 24 F -0.165 7.165 25 C -0.080 4.080 26 H 0.065 0.935 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.065 0.935 34 H 0.054 0.946 35 H 0.067 0.933 36 H 0.131 0.869 37 H 0.057 0.943 38 H 0.152 0.848 39 H 0.148 0.852 40 H 0.245 0.755 41 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -9.595 -1.438 6.795 11.845 hybrid contribution -0.805 0.583 -0.865 1.317 sum -10.400 -0.855 5.931 12.002 Atomic orbital electron populations 1.21759 0.96734 1.00635 1.01515 1.21496 0.95078 0.98242 1.01244 1.22256 0.99367 0.94651 1.01708 1.20942 0.91275 0.86647 0.99080 1.43772 1.75314 1.08199 1.01962 1.19068 1.07528 1.18649 0.92932 0.91906 1.25070 0.94149 1.01464 0.98362 1.69968 1.04543 1.35755 1.42250 0.86448 0.77183 0.82669 0.81545 1.21154 1.21617 1.20194 1.20199 0.92308 0.97325 0.86030 1.21394 0.99714 0.93721 0.93105 1.21277 0.95377 0.94531 0.96061 1.21363 0.96656 1.00671 0.98033 1.17888 0.89932 0.88752 0.95179 1.84820 1.19589 1.75330 1.50905 1.20247 1.00668 0.95341 1.05685 1.18209 0.79048 0.76887 0.79738 1.93148 1.88196 1.39199 1.95614 1.93202 1.96452 1.80818 1.45305 1.93159 1.41314 1.96379 1.85669 1.20838 0.92068 0.99691 0.95386 0.93511 0.93138 0.93076 0.92492 0.92661 0.92710 0.92491 0.93503 0.94560 0.93266 0.86927 0.94326 0.84807 0.85207 0.75528 0.85045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 9.91 37.16 0.37 -1.56 16 2 C -0.12 -1.75 5.93 -26.73 -0.16 -1.91 16 3 C -0.14 -2.41 5.51 -26.73 -0.15 -2.56 16 4 C 0.15 2.86 5.72 -4.04 -0.02 2.83 16 5 N -0.57 -12.90 2.44 -174.60 -0.43 -13.33 16 6 C -0.25 -6.28 9.48 -15.06 -0.14 -6.42 16 7 H 0.06 1.60 7.93 -52.49 -0.42 1.18 16 8 C 0.01 0.25 4.95 -17.43 -0.09 0.16 16 9 N -0.88 -23.24 11.31 55.49 0.63 -22.61 16 10 Si 0.89 20.00 29.61 -169.99 -5.03 14.97 16 11 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 12 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 13 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 14 C 0.17 3.54 5.45 -5.19 -0.03 3.52 16 15 C -0.08 -1.42 5.45 -104.60 -0.57 -1.99 16 16 C -0.05 -0.96 9.69 -39.60 -0.38 -1.35 16 17 C -0.15 -2.35 9.99 -39.43 -0.39 -2.74 16 18 C 0.13 1.99 6.58 -39.22 -0.26 1.73 16 19 O -0.50 -6.78 12.41 -19.42 -0.24 -7.02 16 20 C -0.22 -3.51 5.38 -104.48 -0.56 -4.07 16 21 C 0.52 7.85 2.99 36.00 0.11 7.95 16 22 F -0.18 -2.72 15.97 2.25 0.04 -2.69 16 23 F -0.18 -2.77 16.95 2.25 0.04 -2.73 16 24 F -0.18 -2.67 16.95 2.25 0.04 -2.63 16 25 C -0.06 -1.03 7.25 -39.61 -0.29 -1.32 16 26 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 27 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 29 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.05 0.97 6.13 -51.93 -0.32 0.65 16 32 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.05 0.95 8.09 -51.93 -0.42 0.53 16 34 H 0.04 0.66 7.83 -51.93 -0.41 0.26 16 35 H 0.26 6.57 8.31 -40.82 -0.34 6.23 16 36 H 0.11 2.69 5.26 -51.93 -0.27 2.42 16 37 H 0.04 0.78 7.80 -51.92 -0.41 0.37 16 38 H 0.13 2.55 8.06 -52.49 -0.42 2.13 16 39 H 0.13 1.77 8.06 -52.49 -0.42 1.35 16 40 H 0.39 3.68 9.06 45.56 0.41 4.09 16 41 H 0.13 2.13 7.12 -52.48 -0.37 1.75 16 LS Contribution 353.76 15.07 5.33 5.33 Total: -1.00 -26.55 353.76 -6.91 -33.46 By element: Atomic # 1 Polarization: 9.67 SS G_CDS: -4.72 Total: 4.95 kcal Atomic # 6 Polarization: -5.15 SS G_CDS: -2.57 Total: -7.72 kcal Atomic # 7 Polarization: -36.13 SS G_CDS: 0.20 Total: -35.93 kcal Atomic # 8 Polarization: -6.78 SS G_CDS: -0.24 Total: -7.02 kcal Atomic # 9 Polarization: -8.16 SS G_CDS: 0.11 Total: -8.05 kcal Atomic # 14 Polarization: 20.00 SS G_CDS: -5.03 Total: 14.97 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -26.55 -6.91 -33.46 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231525735.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -132.035 kcal (2) G-P(sol) polarization free energy of solvation -26.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds