Wall clock time and date at job start Tue Mar 31 2020 12:18:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53005 * 109.46666 * 2 1 4 4 C 1.53001 * 109.46622 * 180.02562 * 3 2 1 5 5 N 1.46501 * 109.46742 * 179.97438 * 4 3 2 6 6 C 1.36932 * 120.00469 * 275.65877 * 5 4 3 7 7 H 1.08001 * 120.00213 * 34.00493 * 6 5 4 8 8 C 1.38810 * 120.00207 * 214.01256 * 6 5 4 9 9 N 1.31622 * 119.99912 * 22.90481 * 8 6 5 10 10 Si 1.86795 * 120.00123 * 202.90357 * 8 6 5 11 11 H 1.48504 * 109.47164 * 90.00031 * 10 8 6 12 12 H 1.48510 * 109.47120 * 209.99815 * 10 8 6 13 13 H 1.48502 * 109.47240 * 329.99872 * 10 8 6 14 14 C 1.46504 * 119.99799 * 95.65376 * 5 4 3 15 15 C 1.50699 * 109.47295 * 270.00214 * 14 5 4 16 16 C 1.38288 * 119.94047 * 270.25263 * 15 14 5 17 17 C 1.38125 * 120.05263 * 180.25866 * 16 15 14 18 18 C 1.38750 * 119.94235 * 359.48828 * 17 16 15 19 19 O 1.35898 * 120.05492 * 180.27867 * 18 17 16 20 20 C 1.38712 * 119.89177 * 0.25786 * 18 17 16 21 21 C 1.50694 * 120.03149 * 180.02562 * 20 18 17 22 22 F 1.39899 * 109.47724 * 180.02562 * 21 20 18 23 23 F 1.39904 * 109.47181 * 300.00355 * 21 20 18 24 24 F 1.39908 * 109.47150 * 59.99798 * 21 20 18 25 25 C 1.38166 * 119.93942 * 359.97438 * 20 18 17 26 26 H 1.09006 * 109.46674 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.46967 * 299.99659 * 1 2 3 28 28 H 1.08990 * 109.47721 * 60.00163 * 1 2 3 29 29 H 1.09002 * 109.46603 * 240.00007 * 2 1 3 30 30 H 1.08993 * 109.47227 * 119.99932 * 2 1 3 31 31 H 1.09000 * 109.47129 * 60.00028 * 3 2 1 32 32 H 1.09001 * 109.46949 * 299.99846 * 3 2 1 33 33 H 1.09006 * 109.47280 * 60.00176 * 4 3 2 34 34 H 1.08993 * 109.46958 * 299.99740 * 4 3 2 35 35 H 0.97005 * 120.00035 * 180.02562 * 9 8 6 36 36 H 1.09003 * 109.46611 * 149.99630 * 14 5 4 37 37 H 1.09008 * 109.46995 * 30.00338 * 14 5 4 38 38 H 1.07999 * 119.97745 * 0.02562 * 16 15 14 39 39 H 1.07999 * 120.02829 * 179.76750 * 17 16 15 40 40 H 0.96702 * 113.99903 * 89.99989 * 19 18 17 41 41 H 1.08003 * 119.96830 * 179.97438 * 25 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 -0.0006 5 7 4.0582 2.8238 -0.0013 6 6 4.1757 3.5080 -1.1815 7 1 3.4713 3.3310 -1.9809 8 6 5.2002 4.4292 -1.3508 9 7 6.2912 4.3418 -0.6197 10 14 5.0307 5.7927 -2.6162 11 1 4.4029 6.9803 -1.9831 12 1 6.3742 6.1591 -3.1323 13 1 4.1802 5.3229 -3.7393 14 6 4.4207 3.4731 1.2610 15 6 3.2120 4.1670 1.8343 16 6 2.9455 5.4811 1.4961 17 6 1.8413 6.1210 2.0243 18 6 0.9933 5.4409 2.8866 19 8 -0.0969 6.0665 3.4032 20 6 1.2600 4.1211 3.2201 21 6 0.3408 3.3792 4.1559 22 9 0.8145 2.0756 4.3388 23 9 0.3007 4.0377 5.3896 24 9 -0.9460 3.3357 3.6084 25 6 2.3685 3.4870 2.6928 26 1 -0.3633 -1.0278 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5137 -0.8899 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 1.6766 1.9564 0.8900 32 1 1.6766 1.9564 -0.8900 33 1 3.9330 0.9289 -0.8909 34 1 3.9336 0.9287 0.8891 35 1 7.0071 4.9857 -0.7377 36 1 5.2081 4.2049 1.0801 37 1 4.7774 2.7225 1.9664 38 1 3.6033 6.0088 0.8213 39 1 1.6356 7.1485 1.7629 40 1 -0.8946 5.9758 2.8642 41 1 2.5768 2.4596 2.9525 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001231525735.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:18:44 Heat of formation + Delta-G solvation = -178.142552 kcal Electronic energy + Delta-G solvation = -28091.129326 eV Core-core repulsion = 23748.794931 eV Total energy + Delta-G solvation = -4342.334396 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.134 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -51.16165 -48.69232 -48.61067 -40.95194 -38.61704 -37.25683 -35.55103 -33.30629 -32.96250 -31.68537 -29.37656 -27.33001 -26.88421 -25.38101 -23.49116 -23.00062 -22.02340 -21.71563 -19.81473 -19.48973 -19.38547 -18.86250 -18.25936 -17.01654 -16.67096 -16.50456 -16.25776 -15.66171 -15.53309 -15.39886 -15.34814 -15.23588 -15.07123 -14.95491 -14.79408 -14.72038 -14.49807 -13.77010 -13.71088 -13.46919 -13.40307 -13.19351 -13.01844 -12.81296 -12.67865 -12.37933 -12.12474 -11.98604 -11.88197 -11.78951 -11.63672 -11.55936 -11.26281 -10.50163 -10.19972 -9.52149 -8.60283 -7.82903 -5.40128 -0.06677 0.23690 1.45393 1.50357 1.56585 1.64926 2.41069 2.54119 2.69395 3.00917 3.10340 3.24044 3.42503 3.78005 3.87196 4.09426 4.17461 4.30435 4.33448 4.36744 4.43722 4.57154 4.60422 4.79551 4.90185 4.93194 5.01497 5.07046 5.08667 5.11884 5.20038 5.25277 5.40917 5.51889 5.56503 5.65156 5.72368 5.74631 5.82877 6.46642 6.64771 7.15954 7.85188 8.36882 9.13323 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.012286 B = 0.005542 C = 0.004396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2278.476172 B = 5051.255832 C = 6367.564637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.119 4.119 3 C -0.125 4.125 4 C 0.145 3.855 5 N -0.589 5.589 6 C -0.255 4.255 7 H 0.052 0.948 8 C -0.028 4.028 9 N -0.911 5.911 10 Si 0.943 3.057 11 H -0.278 1.278 12 H -0.296 1.296 13 H -0.276 1.276 14 C 0.173 3.827 15 C -0.090 4.090 16 C -0.064 4.064 17 C -0.144 4.144 18 C 0.143 3.857 19 O -0.496 6.496 20 C -0.222 4.222 21 C 0.521 3.479 22 F -0.179 7.179 23 F -0.178 7.178 24 F -0.177 7.177 25 C -0.056 4.056 26 H 0.066 0.934 27 H 0.047 0.953 28 H 0.048 0.952 29 H 0.060 0.940 30 H 0.065 0.935 31 H 0.051 0.949 32 H 0.036 0.964 33 H 0.033 0.967 34 H 0.047 0.953 35 H 0.253 0.747 36 H 0.085 0.915 37 H 0.041 0.959 38 H 0.117 0.883 39 H 0.154 0.846 40 H 0.411 0.589 41 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.346 -1.624 7.134 14.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.157 4.157 3 C -0.165 4.165 4 C 0.019 3.981 5 N -0.308 5.308 6 C -0.385 4.385 7 H 0.070 0.930 8 C -0.225 4.225 9 N -0.555 5.555 10 Si 0.771 3.229 11 H -0.205 1.205 12 H -0.223 1.223 13 H -0.201 1.201 14 C 0.047 3.953 15 C -0.093 4.093 16 C -0.083 4.083 17 C -0.163 4.163 18 C 0.097 3.903 19 O -0.310 6.310 20 C -0.224 4.224 21 C 0.467 3.533 22 F -0.160 7.160 23 F -0.159 7.159 24 F -0.159 7.159 25 C -0.075 4.075 26 H 0.085 0.915 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.078 0.922 30 H 0.084 0.916 31 H 0.070 0.930 32 H 0.055 0.945 33 H 0.051 0.949 34 H 0.065 0.935 35 H 0.063 0.937 36 H 0.102 0.898 37 H 0.059 0.941 38 H 0.135 0.865 39 H 0.172 0.828 40 H 0.271 0.729 41 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -11.821 -1.439 7.567 14.109 hybrid contribution -0.205 0.575 -1.024 1.192 sum -12.026 -0.864 6.544 13.718 Atomic orbital electron populations 1.21723 0.95356 1.01914 1.01297 1.21464 0.96241 0.96030 1.01933 1.22052 0.97347 0.96565 1.00506 1.21030 0.92826 0.85317 0.98879 1.43935 1.75744 1.09332 1.01783 1.19126 1.06902 1.18867 0.93642 0.93013 1.25564 0.93945 1.03037 0.99997 1.70075 1.05145 1.36419 1.43906 0.85659 0.76573 0.80809 0.79833 1.20478 1.22304 1.20065 1.19973 0.92804 0.96751 0.85724 1.21044 0.99296 0.94245 0.94697 1.21204 0.96169 0.94495 0.96428 1.21512 0.95584 1.01662 0.97514 1.17909 0.90235 0.88328 0.93812 1.84773 1.19974 1.74885 1.51344 1.20355 1.00544 0.95778 1.05747 1.18008 0.79062 0.76780 0.79420 1.93154 1.88224 1.39067 1.95582 1.93204 1.96465 1.80881 1.45355 1.93174 1.40772 1.96345 1.85560 1.20780 0.91968 0.99878 0.94878 0.91505 0.93339 0.93314 0.92165 0.91641 0.92994 0.94473 0.94883 0.93473 0.93716 0.89767 0.94062 0.86521 0.82812 0.72921 0.84436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.42 9.91 71.98 0.71 -2.71 16 2 C -0.12 -3.18 5.93 30.60 0.18 -3.00 16 3 C -0.12 -4.23 5.51 30.60 0.17 -4.06 16 4 C 0.14 5.67 5.72 86.38 0.49 6.16 16 5 N -0.59 -26.96 2.44 -706.32 -1.73 -28.69 16 6 C -0.26 -12.98 9.48 84.03 0.80 -12.19 16 7 H 0.05 2.70 7.93 -2.91 -0.02 2.68 16 8 C -0.03 -1.43 4.95 84.86 0.42 -1.01 16 9 N -0.91 -49.43 11.31 21.65 0.24 -49.18 16 10 Si 0.94 41.77 29.61 68.60 2.03 43.80 16 11 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 12 H -0.30 -13.35 7.11 99.48 0.71 -12.65 16 13 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 14 C 0.17 7.51 5.45 85.63 0.47 7.97 16 15 C -0.09 -3.35 5.45 -19.85 -0.11 -3.46 16 16 C -0.06 -2.29 9.69 22.25 0.22 -2.07 16 17 C -0.14 -4.28 9.99 22.37 0.22 -4.05 16 18 C 0.14 4.06 6.58 22.51 0.15 4.21 16 19 O -0.50 -11.78 12.41 -92.41 -1.15 -12.93 16 20 C -0.22 -6.67 5.38 -19.77 -0.11 -6.78 16 21 C 0.52 14.51 2.99 71.23 0.21 14.72 16 22 F -0.18 -4.98 15.97 44.97 0.72 -4.26 16 23 F -0.18 -5.10 16.95 44.97 0.76 -4.34 16 24 F -0.18 -4.61 16.95 44.97 0.76 -3.84 16 25 C -0.06 -1.84 7.25 22.25 0.16 -1.68 16 26 H 0.07 1.31 8.14 -2.38 -0.02 1.29 16 27 H 0.05 1.15 8.14 -2.38 -0.02 1.13 16 28 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 29 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 30 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 31 H 0.05 1.78 6.13 -2.39 -0.01 1.76 16 32 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.03 1.36 8.09 -2.38 -0.02 1.34 16 34 H 0.05 1.71 7.83 -2.39 -0.02 1.70 16 35 H 0.25 13.36 8.31 -92.70 -0.77 12.59 16 36 H 0.08 4.19 5.26 -2.39 -0.01 4.18 16 37 H 0.04 1.70 7.80 -2.38 -0.02 1.68 16 38 H 0.12 4.55 8.06 -2.91 -0.02 4.53 16 39 H 0.15 3.76 8.06 -2.91 -0.02 3.74 16 40 H 0.41 6.14 9.06 -74.06 -0.67 5.47 16 41 H 0.14 4.27 7.12 -2.91 -0.02 4.25 16 Total: -1.00 -56.58 353.76 6.02 -50.56 By element: Atomic # 1 Polarization: 16.44 SS G_CDS: 0.39 Total: 16.83 kcal Atomic # 6 Polarization: -11.93 SS G_CDS: 3.99 Total: -7.94 kcal Atomic # 7 Polarization: -76.39 SS G_CDS: -1.48 Total: -77.87 kcal Atomic # 8 Polarization: -11.78 SS G_CDS: -1.15 Total: -12.93 kcal Atomic # 9 Polarization: -14.68 SS G_CDS: 2.24 Total: -12.44 kcal Atomic # 14 Polarization: 41.77 SS G_CDS: 2.03 Total: 43.80 kcal Total: -56.58 6.02 -50.56 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231525735.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.585 kcal (2) G-P(sol) polarization free energy of solvation -56.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -184.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds