Wall clock time and date at job start Tue Mar 31 2020 11:27:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50693 * 109.46986 * 2 1 4 4 C 1.33640 * 122.75241 * 124.99797 * 3 2 1 5 5 S 1.76202 * 107.92615 * 180.02562 * 4 3 2 6 6 C 1.70977 * 90.28185 * 359.97438 * 5 4 3 7 7 C 1.50700 * 124.91463 * 179.97438 * 6 5 4 8 8 N 1.46911 * 109.46962 * 270.02658 * 7 6 5 9 9 C 1.46902 * 110.99905 * 66.04608 * 8 7 6 10 10 C 1.50703 * 109.47093 * 62.93242 * 9 8 7 11 11 H 1.08003 * 120.00149 * 4.96025 * 10 9 8 12 12 C 1.37874 * 120.00135 * 184.96257 * 10 9 8 13 13 N 1.31522 * 119.99720 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 120.00275 * 180.02562 * 12 10 9 15 15 H 1.48501 * 109.46829 * 359.97438 * 14 12 10 16 16 H 1.48493 * 109.47383 * 119.99981 * 14 12 10 17 17 H 1.48502 * 109.46888 * 240.00089 * 14 12 10 18 18 C 1.46898 * 110.99624 * 189.99750 * 8 7 6 19 19 C 1.50706 * 109.46875 * 163.94987 * 18 8 7 20 20 C 1.38675 * 120.41791 * 275.61254 * 19 18 8 21 21 C 1.38626 * 118.41753 * 179.78064 * 20 19 18 22 22 C 1.38223 * 119.16172 * 0.51206 * 21 20 19 23 23 N 1.31854 * 120.76323 * 359.72758 * 22 21 20 24 24 C 1.31883 * 121.72609 * 0.02562 * 23 22 21 25 25 N 1.29024 * 110.16789 * 0.24518 * 6 5 4 26 26 H 1.09004 * 109.47344 * 300.00164 * 1 2 3 27 27 H 1.09007 * 109.47386 * 60.00210 * 1 2 3 28 28 H 1.09004 * 109.47063 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46926 * 240.00086 * 2 1 3 30 30 H 1.09001 * 109.47005 * 119.99607 * 2 1 3 31 31 H 1.07997 * 126.03606 * 0.03603 * 4 3 2 32 32 H 1.08995 * 109.47180 * 150.02900 * 7 6 5 33 33 H 1.08998 * 109.47310 * 30.02609 * 7 6 5 34 34 H 1.08994 * 109.46859 * 182.93176 * 9 8 7 35 35 H 1.09001 * 109.46956 * 302.93490 * 9 8 7 36 36 H 0.96996 * 119.99540 * 179.97438 * 13 12 10 37 37 H 1.08997 * 109.47630 * 283.95294 * 18 8 7 38 38 H 1.09008 * 109.47348 * 43.95778 * 18 8 7 39 39 H 1.07995 * 120.79128 * 0.02562 * 20 19 18 40 40 H 1.08001 * 120.41831 * 180.21761 * 21 20 19 41 41 H 1.08003 * 119.62245 * 179.74329 * 22 21 20 42 42 H 1.08004 * 119.61697 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.8810 1.8876 0.9207 5 16 3.2044 3.5799 0.5518 6 6 2.1667 3.4913 -0.8042 7 6 1.8733 4.6340 -1.7419 8 7 0.7081 5.3827 -1.2519 9 6 1.0072 6.0458 0.0243 10 6 2.1052 7.0575 -0.1804 11 1 2.4822 7.2518 -1.1737 12 6 2.6285 7.7352 0.9003 13 7 2.1691 7.4990 2.1098 14 14 3.9891 8.9897 0.6464 15 1 4.3251 9.0700 -0.7978 16 1 3.5315 10.3195 1.1233 17 1 5.1926 8.5764 1.4119 18 6 0.2465 6.3528 -2.2538 19 6 -1.1456 6.8120 -1.9041 20 6 -2.2492 6.0694 -2.2961 21 6 -3.5103 6.5279 -1.9483 22 6 -3.6256 7.7072 -1.2365 23 7 -2.5540 8.3901 -0.8848 24 6 -1.3388 7.9816 -1.1942 25 7 1.6669 2.3061 -0.9052 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.2956 1.3265 1.7451 32 1 1.6614 4.2424 -2.7367 33 1 2.7375 5.2967 -1.7888 34 1 0.1126 6.5496 0.3904 35 1 1.3295 5.3023 0.7533 36 1 2.5376 7.9755 2.8701 37 1 0.9195 7.2101 -2.2666 38 1 0.2377 5.8830 -3.2374 39 1 -2.1288 5.1536 -2.8557 40 1 -4.3919 5.9731 -2.2339 41 1 -4.6048 8.0734 -0.9652 42 1 -0.4847 8.5676 -0.8883 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001232470223.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:27:56 Heat of formation + Delta-G solvation = 61.280429 kcal Electronic energy + Delta-G solvation = -24076.919072 eV Core-core repulsion = 20761.869198 eV Total energy + Delta-G solvation = -3315.049874 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 317.126 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.08455 -40.73230 -38.52916 -34.70562 -34.52990 -33.41560 -32.48425 -30.80430 -29.19837 -28.29573 -26.21898 -25.34548 -24.39507 -24.05179 -22.60957 -21.49518 -20.36293 -18.77553 -18.14521 -17.79846 -17.25826 -16.78098 -16.72471 -16.29403 -15.82693 -15.71015 -15.35641 -14.79831 -14.68511 -14.54530 -14.30369 -14.17256 -13.89848 -13.79024 -13.27041 -13.16435 -12.85394 -12.70492 -12.64912 -12.53156 -12.49044 -12.16509 -12.05243 -11.91699 -11.68797 -11.59649 -10.62521 -10.58144 -10.44163 -10.27033 -10.14137 -9.83617 -9.51343 -9.01984 -8.08791 -6.25746 -0.13633 0.30908 0.49300 0.62923 1.06032 1.37338 1.41735 1.49283 1.92226 2.40733 2.92256 3.19172 3.22969 3.55234 3.68390 4.01695 4.04431 4.09150 4.19354 4.24990 4.28227 4.38558 4.44573 4.53172 4.60567 4.63967 4.72397 4.78152 4.83484 4.99802 5.00351 5.05358 5.23612 5.25004 5.30696 5.35382 5.43537 5.51019 5.52722 5.81489 5.92736 6.03856 6.23510 6.40438 6.91851 6.92977 7.15699 7.44977 8.94202 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.008778 B = 0.005984 C = 0.003910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3189.105921 B = 4677.702284 C = 7158.659907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.041 4.041 3 C 0.049 3.951 4 C -0.282 4.282 5 S 0.125 5.875 6 C 0.063 3.937 7 C 0.137 3.863 8 N -0.530 5.530 9 C 0.198 3.802 10 C -0.544 4.544 11 H 0.063 0.937 12 C 0.028 3.972 13 N -0.916 5.916 14 Si 0.936 3.064 15 H -0.262 1.262 16 H -0.287 1.287 17 H -0.282 1.282 18 C 0.103 3.897 19 C -0.120 4.120 20 C -0.063 4.063 21 C -0.170 4.170 22 C 0.076 3.924 23 N -0.521 5.521 24 C 0.095 3.905 25 N -0.478 5.478 26 H 0.037 0.963 27 H 0.045 0.955 28 H 0.081 0.919 29 H 0.087 0.913 30 H 0.098 0.902 31 H 0.196 0.804 32 H 0.108 0.892 33 H 0.058 0.942 34 H -0.002 1.002 35 H 0.018 0.982 36 H 0.261 0.739 37 H 0.047 0.953 38 H 0.098 0.902 39 H 0.153 0.847 40 H 0.169 0.831 41 H 0.179 0.821 42 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.002 -11.273 -7.990 14.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.081 4.081 3 C -0.083 4.083 4 C -0.422 4.422 5 S 0.381 5.619 6 C -0.215 4.215 7 C 0.006 3.994 8 N -0.254 5.254 9 C 0.071 3.929 10 C -0.583 4.583 11 H 0.081 0.919 12 C -0.172 4.172 13 N -0.556 5.556 14 Si 0.762 3.238 15 H -0.186 1.186 16 H -0.213 1.213 17 H -0.208 1.208 18 C -0.025 4.025 19 C -0.123 4.123 20 C -0.089 4.089 21 C -0.189 4.189 22 C -0.081 4.081 23 N -0.230 5.230 24 C -0.061 4.061 25 N -0.194 5.194 26 H 0.057 0.943 27 H 0.065 0.935 28 H 0.100 0.900 29 H 0.106 0.894 30 H 0.116 0.884 31 H 0.213 0.787 32 H 0.126 0.874 33 H 0.076 0.924 34 H 0.016 0.984 35 H 0.036 0.964 36 H 0.070 0.930 37 H 0.065 0.935 38 H 0.116 0.884 39 H 0.170 0.830 40 H 0.186 0.814 41 H 0.196 0.804 42 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -4.184 -10.070 -7.251 13.095 hybrid contribution 1.356 0.232 0.141 1.383 sum -2.827 -9.838 -7.110 12.463 Atomic orbital electron populations 1.21622 0.94506 1.02325 1.01193 1.20203 0.96420 0.87336 1.04093 1.20788 0.97383 0.98569 0.91603 1.27258 1.09174 0.97833 1.07893 1.84900 1.44214 1.07902 1.24838 1.26916 0.98512 0.96347 0.99721 1.20495 0.93976 0.89682 0.95221 1.62420 1.31761 1.26577 1.04668 1.19523 0.93950 0.92414 0.87009 1.21807 1.20144 1.22960 0.93395 0.91946 1.25543 0.98439 0.98313 0.94940 1.70073 1.43388 1.42844 0.99274 0.85838 0.79876 0.79369 0.78684 1.18619 1.21299 1.20771 1.20885 0.91337 0.95227 0.95093 1.20802 0.96981 0.95461 0.99042 1.21749 0.91688 0.98645 0.96863 1.22451 0.98986 0.97675 0.99784 1.23263 0.97653 0.92523 0.94687 1.67636 0.99746 1.35087 1.20571 1.22593 0.94251 0.95074 0.94187 1.66081 1.24304 1.00965 1.28057 0.94349 0.93539 0.89968 0.89448 0.88391 0.78679 0.87447 0.92424 0.98405 0.96415 0.93003 0.93494 0.88378 0.82967 0.81367 0.80442 0.85170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.12 9.81 71.98 0.71 -2.42 16 2 C -0.04 -0.91 6.43 29.85 0.19 -0.71 16 3 C 0.05 1.53 6.08 41.52 0.25 1.79 16 4 C -0.28 -8.68 11.07 66.78 0.74 -7.95 16 5 S 0.13 4.74 21.58 -56.49 -1.22 3.52 16 6 C 0.06 2.39 6.18 88.52 0.55 2.94 16 7 C 0.14 4.99 5.36 85.55 0.46 5.45 16 8 N -0.53 -21.24 4.65 -909.91 -4.23 -25.46 16 9 C 0.20 9.73 4.68 85.56 0.40 10.13 16 10 C -0.54 -27.45 7.34 25.60 0.19 -27.26 16 11 H 0.06 3.05 5.95 -2.91 -0.02 3.04 16 12 C 0.03 1.50 5.46 84.65 0.46 1.96 16 13 N -0.92 -52.52 13.29 21.45 0.28 -52.23 16 14 Si 0.94 42.19 29.54 68.60 2.03 44.22 16 15 H -0.26 -11.25 7.11 99.48 0.71 -10.55 16 16 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 17 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 18 C 0.10 3.58 4.97 85.56 0.43 4.00 16 19 C -0.12 -4.22 4.91 -19.77 -0.10 -4.31 16 20 C -0.06 -1.80 9.88 22.47 0.22 -1.57 16 21 C -0.17 -4.22 10.11 22.36 0.23 -3.99 16 22 C 0.08 2.19 11.18 84.69 0.95 3.14 16 23 N -0.52 -19.66 10.36 -195.85 -2.03 -21.69 16 24 C 0.10 3.79 9.70 84.67 0.82 4.61 16 25 N -0.48 -17.17 10.34 -179.41 -1.85 -19.02 16 26 H 0.04 0.96 8.14 -2.38 -0.02 0.94 16 27 H 0.05 1.21 8.07 -2.38 -0.02 1.19 16 28 H 0.08 1.36 8.14 -2.38 -0.02 1.34 16 29 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 30 H 0.10 1.68 8.03 -2.39 -0.02 1.66 16 31 H 0.20 4.63 8.06 -2.91 -0.02 4.60 16 32 H 0.11 3.33 7.86 -2.39 -0.02 3.31 16 33 H 0.06 2.20 6.59 -2.39 -0.02 2.19 16 34 H 0.00 -0.12 6.62 -2.39 -0.02 -0.14 16 35 H 0.02 0.96 5.86 -2.39 -0.01 0.95 16 36 H 0.26 14.34 8.31 -92.71 -0.77 13.57 16 37 H 0.05 1.79 6.06 -2.39 -0.01 1.78 16 38 H 0.10 2.75 7.79 -2.38 -0.02 2.74 16 39 H 0.15 3.59 8.06 -2.91 -0.02 3.56 16 40 H 0.17 2.75 8.06 -2.91 -0.02 2.73 16 41 H 0.18 3.80 8.06 -2.91 -0.02 3.77 16 42 H 0.13 5.77 8.06 -2.91 -0.02 5.75 16 Total: -1.00 -65.44 360.09 0.49 -64.95 By element: Atomic # 1 Polarization: 18.89 SS G_CDS: 1.02 Total: 19.91 kcal Atomic # 6 Polarization: -20.68 SS G_CDS: 6.49 Total: -14.19 kcal Atomic # 7 Polarization: -110.58 SS G_CDS: -7.83 Total: -118.40 kcal Atomic # 14 Polarization: 42.19 SS G_CDS: 2.03 Total: 44.22 kcal Atomic # 16 Polarization: 4.74 SS G_CDS: -1.22 Total: 3.52 kcal Total: -65.44 0.49 -64.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001232470223.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.226 kcal (2) G-P(sol) polarization free energy of solvation -65.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.946 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds