Wall clock time and date at job start Tue Mar 31 2020 12:19:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.46935 * 2 1 4 4 C 1.52995 * 109.47054 * 180.02562 * 3 2 1 5 5 N 1.46503 * 109.47170 * 184.61300 * 4 3 2 6 6 C 1.36940 * 119.99526 * 274.40552 * 5 4 3 7 7 H 1.07995 * 120.00154 * 320.53090 * 6 5 4 8 8 C 1.38816 * 119.99235 * 140.53341 * 6 5 4 9 9 N 1.31621 * 119.99440 * 160.94607 * 8 6 5 10 10 Si 1.86800 * 120.00241 * 340.94281 * 8 6 5 11 11 H 1.48502 * 109.47060 * 94.04226 * 10 8 6 12 12 H 1.48504 * 109.46762 * 214.03998 * 10 8 6 13 13 H 1.48501 * 109.47254 * 334.04009 * 10 8 6 14 14 C 1.46496 * 120.00104 * 94.40839 * 5 4 3 15 15 C 1.50702 * 109.47320 * 83.73346 * 14 5 4 16 16 C 1.38165 * 120.02923 * 260.75849 * 15 14 5 17 17 C 1.38247 * 120.05789 * 180.02562 * 16 15 14 18 18 C 1.38287 * 120.10759 * 359.97438 * 17 16 15 19 19 C 1.38119 * 120.05977 * 0.02577 * 18 17 16 20 20 C 1.50698 * 120.03098 * 179.97438 * 19 18 17 21 21 F 1.39899 * 109.46859 * 359.97438 * 20 19 18 22 22 F 1.39897 * 109.47314 * 119.97563 * 20 19 18 23 23 F 1.39895 * 109.47300 * 239.97792 * 20 19 18 24 24 C 1.38714 * 120.02876 * 80.79481 * 15 14 5 25 25 O 1.35902 * 120.05280 * 0.25429 * 24 15 14 26 26 H 1.09006 * 109.47154 * 300.00056 * 1 2 3 27 27 H 1.09001 * 109.47364 * 60.00155 * 1 2 3 28 28 H 1.09001 * 109.46982 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.46943 * 240.00084 * 2 1 3 30 30 H 1.09001 * 109.47364 * 119.99845 * 2 1 3 31 31 H 1.08997 * 109.47236 * 60.00264 * 3 2 1 32 32 H 1.09001 * 109.46969 * 300.00088 * 3 2 1 33 33 H 1.08999 * 109.47486 * 64.60782 * 4 3 2 34 34 H 1.09009 * 109.47295 * 304.60870 * 4 3 2 35 35 H 0.97002 * 119.99714 * 180.02562 * 9 8 6 36 36 H 1.08997 * 109.47112 * 323.73311 * 14 5 4 37 37 H 1.09001 * 109.47071 * 203.73399 * 14 5 4 38 38 H 1.08000 * 119.96955 * 0.02562 * 16 15 14 39 39 H 1.08002 * 119.94598 * 179.97438 * 17 16 15 40 40 H 1.08004 * 119.97197 * 180.02562 * 18 17 16 41 41 H 0.96699 * 114.00072 * 271.55671 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5699 1.4426 -0.0006 5 7 4.0583 2.8194 0.1104 6 6 4.2001 3.5882 -1.0138 7 1 4.5801 3.1488 -1.9242 8 6 3.8554 4.9326 -0.9831 9 7 4.3222 5.7527 -1.9007 10 14 2.7290 5.5776 0.3603 11 1 3.5474 6.1057 1.4812 12 1 1.8785 6.6651 -0.1869 13 1 1.8657 4.4749 0.8542 14 6 4.3949 3.3734 1.4241 15 6 5.7988 2.9699 1.7948 16 6 6.0093 1.9046 2.6491 17 6 7.2969 1.5343 2.9900 18 6 8.3772 2.2283 2.4766 19 6 8.1722 3.2940 1.6221 20 6 9.3499 4.0502 1.0635 21 9 10.5363 3.4917 1.5510 22 9 9.3359 3.9697 -0.3331 23 9 9.2708 5.3912 1.4541 24 6 6.8808 3.6681 1.2791 25 8 6.6762 4.7200 0.4433 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.6767 1.9564 0.8900 32 1 1.6766 1.9564 -0.8900 33 1 3.9329 1.0021 -0.9292 34 1 3.9337 0.8588 0.8450 35 1 4.0817 6.6921 -1.8790 36 1 3.6980 2.9902 2.1695 37 1 4.3269 4.4607 1.3882 38 1 5.1672 1.3608 3.0510 39 1 7.4593 0.7016 3.6583 40 1 9.3822 1.9369 2.7440 41 1 6.6156 4.4746 -0.4901 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233418992.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:41 Heat of formation + Delta-G solvation = -159.307484 kcal Electronic energy + Delta-G solvation = -27996.698095 eV Core-core repulsion = 23655.180449 eV Total energy + Delta-G solvation = -4341.517646 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.134 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.82137 -47.38791 -47.22336 -39.66775 -36.57627 -36.08385 -34.24191 -32.20660 -31.36406 -30.03886 -28.25966 -25.76182 -25.64128 -24.11259 -21.97666 -21.52749 -20.96422 -19.99774 -18.28539 -18.12451 -17.99504 -17.36138 -16.71794 -15.75996 -15.36460 -15.01829 -14.79218 -14.38492 -14.19904 -14.15099 -13.94781 -13.75494 -13.69108 -13.46659 -13.43159 -13.28048 -13.01877 -12.54440 -12.42869 -12.18317 -12.14215 -11.90734 -11.70469 -11.37199 -11.20074 -10.92717 -10.77135 -10.61157 -10.40258 -10.00623 -9.97619 -9.90314 -9.66134 -8.86076 -8.63303 -8.23725 -6.93850 -6.09622 -3.55628 1.20145 1.52182 2.99318 3.30517 3.43788 3.46243 3.68930 4.03829 4.35451 4.46403 4.67548 4.78379 4.95381 5.08476 5.15996 5.25848 5.30887 5.42769 5.48803 5.50907 5.61757 5.78140 5.85668 6.06139 6.07837 6.16088 6.18112 6.24856 6.27259 6.34979 6.44068 6.45848 6.51064 6.61558 6.82566 6.86794 7.00365 7.03399 7.95791 8.27974 8.36224 8.87367 9.60352 10.01537 11.04209 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.014170 B = 0.005198 C = 0.004270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1975.462488 B = 5385.735562 C = 6555.075203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.122 4.122 3 C -0.139 4.139 4 C 0.152 3.848 5 N -0.597 5.597 6 C -0.284 4.284 7 H 0.080 0.920 8 C 0.054 3.946 9 N -0.891 5.891 10 Si 0.874 3.126 11 H -0.282 1.282 12 H -0.302 1.302 13 H -0.267 1.267 14 C 0.169 3.831 15 C -0.115 4.115 16 C -0.076 4.076 17 C -0.142 4.142 18 C -0.075 4.075 19 C -0.226 4.226 20 C 0.516 3.484 21 F -0.187 7.187 22 F -0.176 7.176 23 F -0.173 7.173 24 C 0.194 3.806 25 O -0.482 6.482 26 H 0.049 0.951 27 H 0.052 0.948 28 H 0.046 0.954 29 H 0.057 0.943 30 H 0.053 0.947 31 H 0.050 0.950 32 H 0.064 0.936 33 H 0.048 0.952 34 H 0.038 0.962 35 H 0.266 0.734 36 H 0.048 0.952 37 H 0.077 0.923 38 H 0.126 0.874 39 H 0.127 0.873 40 H 0.131 0.869 41 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.810 -9.255 8.386 13.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.160 4.160 3 C -0.179 4.179 4 C 0.026 3.974 5 N -0.317 5.317 6 C -0.412 4.412 7 H 0.097 0.903 8 C -0.149 4.149 9 N -0.531 5.531 10 Si 0.704 3.296 11 H -0.210 1.210 12 H -0.230 1.230 13 H -0.192 1.192 14 C 0.043 3.957 15 C -0.119 4.119 16 C -0.095 4.095 17 C -0.160 4.160 18 C -0.093 4.093 19 C -0.228 4.228 20 C 0.462 3.538 21 F -0.168 7.168 22 F -0.158 7.158 23 F -0.154 7.154 24 C 0.147 3.853 25 O -0.297 6.297 26 H 0.068 0.932 27 H 0.071 0.929 28 H 0.065 0.935 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.069 0.931 32 H 0.083 0.917 33 H 0.066 0.934 34 H 0.056 0.944 35 H 0.076 0.924 36 H 0.066 0.934 37 H 0.095 0.905 38 H 0.144 0.856 39 H 0.145 0.855 40 H 0.149 0.851 41 H 0.279 0.721 Dipole moment (debyes) X Y Z Total from point charges 3.829 -8.710 8.716 12.904 hybrid contribution -0.451 0.403 0.153 0.624 sum 3.378 -8.308 8.869 12.613 Atomic orbital electron populations 1.21768 0.96698 1.00622 1.01671 1.21505 0.95181 0.98171 1.01149 1.22193 0.98961 0.94596 1.02114 1.20919 0.91317 0.86156 0.99003 1.44139 1.73737 1.11351 1.02518 1.18733 1.40115 0.91499 0.90861 0.90259 1.25448 0.96739 0.96572 0.96118 1.69790 1.43411 1.04183 1.35682 0.86985 0.82009 0.78306 0.82283 1.20966 1.23037 1.19175 1.20259 0.87963 0.99331 0.88152 1.21412 0.98697 0.95164 0.96608 1.21158 0.96979 0.95628 0.95746 1.20969 0.92186 1.00916 1.01975 1.20710 0.99937 0.93401 0.95295 1.20401 0.92361 1.01960 1.08109 1.18136 0.82077 0.77726 0.75887 1.93112 1.50451 1.85303 1.87935 1.93208 1.96597 1.96107 1.29862 1.93218 1.96284 1.35261 1.90669 1.18007 0.89267 0.86241 0.91786 1.84667 1.93962 1.28780 1.22298 0.93175 0.92856 0.93512 0.92414 0.92815 0.93076 0.91682 0.93372 0.94360 0.92399 0.93405 0.90509 0.85613 0.85532 0.85085 0.72098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 9.91 37.16 0.37 -1.47 16 2 C -0.12 -1.64 5.93 -26.73 -0.16 -1.80 16 3 C -0.14 -2.36 5.52 -26.73 -0.15 -2.51 16 4 C 0.15 2.74 5.69 -4.04 -0.02 2.72 16 5 N -0.60 -12.71 2.05 -174.61 -0.36 -13.06 16 6 C -0.28 -7.07 8.49 -15.06 -0.13 -7.20 16 7 H 0.08 2.17 8.06 -52.49 -0.42 1.74 16 8 C 0.05 1.42 4.92 -17.43 -0.09 1.33 16 9 N -0.89 -24.98 13.97 55.49 0.78 -24.20 16 10 Si 0.87 21.31 24.95 -169.99 -4.24 17.07 16 11 H -0.28 -6.91 6.66 56.52 0.38 -6.54 16 12 H -0.30 -7.62 7.11 56.52 0.40 -7.22 16 13 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 14 C 0.17 3.41 4.02 -5.19 -0.02 3.39 16 15 C -0.12 -2.10 5.46 -104.47 -0.57 -2.67 16 16 C -0.08 -1.11 9.67 -39.60 -0.38 -1.50 16 17 C -0.14 -1.84 10.04 -39.56 -0.40 -2.23 16 18 C -0.07 -1.05 9.43 -39.61 -0.37 -1.43 16 19 C -0.23 -3.84 5.38 -104.48 -0.56 -4.41 16 20 C 0.52 8.70 2.99 36.00 0.11 8.81 16 21 F -0.19 -2.80 15.97 2.25 0.04 -2.76 16 22 F -0.18 -3.14 16.96 2.25 0.04 -3.11 16 23 F -0.17 -3.14 16.94 2.25 0.04 -3.10 16 24 C 0.19 3.74 6.56 -39.22 -0.26 3.48 16 25 O -0.48 -10.48 11.01 -19.43 -0.21 -10.70 16 26 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 27 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 28 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 33 H 0.05 0.89 8.08 -51.93 -0.42 0.47 16 34 H 0.04 0.61 8.04 -51.92 -0.42 0.20 16 35 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 36 H 0.05 0.88 7.99 -51.93 -0.41 0.46 16 37 H 0.08 1.77 3.26 -51.93 -0.17 1.60 16 38 H 0.13 1.55 8.04 -52.49 -0.42 1.13 16 39 H 0.13 1.22 8.06 -52.49 -0.42 0.79 16 40 H 0.13 1.54 7.15 -52.48 -0.38 1.16 16 41 H 0.42 9.35 7.83 45.56 0.36 9.71 16 LS Contribution 348.56 15.07 5.25 5.25 Total: -1.00 -27.03 348.56 -6.13 -33.16 By element: Atomic # 1 Polarization: 11.74 SS G_CDS: -4.83 Total: 6.91 kcal Atomic # 6 Polarization: -2.83 SS G_CDS: -2.63 Total: -5.47 kcal Atomic # 7 Polarization: -37.68 SS G_CDS: 0.42 Total: -37.26 kcal Atomic # 8 Polarization: -10.48 SS G_CDS: -0.21 Total: -10.70 kcal Atomic # 9 Polarization: -9.08 SS G_CDS: 0.11 Total: -8.97 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -4.24 Total: 17.07 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -27.03 -6.13 -33.16 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233418992.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.144 kcal (2) G-P(sol) polarization free energy of solvation -27.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds