Wall clock time and date at job start Tue Mar 31 2020 12:19:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.46935 * 2 1 4 4 C 1.52995 * 109.47054 * 180.02562 * 3 2 1 5 5 N 1.46503 * 109.47170 * 184.61300 * 4 3 2 6 6 C 1.36940 * 119.99526 * 274.40552 * 5 4 3 7 7 H 1.07995 * 120.00154 * 320.53090 * 6 5 4 8 8 C 1.38816 * 119.99235 * 140.53341 * 6 5 4 9 9 N 1.31621 * 119.99440 * 160.94607 * 8 6 5 10 10 Si 1.86800 * 120.00241 * 340.94281 * 8 6 5 11 11 H 1.48502 * 109.47060 * 94.04226 * 10 8 6 12 12 H 1.48504 * 109.46762 * 214.03998 * 10 8 6 13 13 H 1.48501 * 109.47254 * 334.04009 * 10 8 6 14 14 C 1.46496 * 120.00104 * 94.40839 * 5 4 3 15 15 C 1.50702 * 109.47320 * 83.73346 * 14 5 4 16 16 C 1.38165 * 120.02923 * 260.75849 * 15 14 5 17 17 C 1.38247 * 120.05789 * 180.02562 * 16 15 14 18 18 C 1.38287 * 120.10759 * 359.97438 * 17 16 15 19 19 C 1.38119 * 120.05977 * 0.02577 * 18 17 16 20 20 C 1.50698 * 120.03098 * 179.97438 * 19 18 17 21 21 F 1.39899 * 109.46859 * 359.97438 * 20 19 18 22 22 F 1.39897 * 109.47314 * 119.97563 * 20 19 18 23 23 F 1.39895 * 109.47300 * 239.97792 * 20 19 18 24 24 C 1.38714 * 120.02876 * 80.79481 * 15 14 5 25 25 O 1.35902 * 120.05280 * 0.25429 * 24 15 14 26 26 H 1.09006 * 109.47154 * 300.00056 * 1 2 3 27 27 H 1.09001 * 109.47364 * 60.00155 * 1 2 3 28 28 H 1.09001 * 109.46982 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.46943 * 240.00084 * 2 1 3 30 30 H 1.09001 * 109.47364 * 119.99845 * 2 1 3 31 31 H 1.08997 * 109.47236 * 60.00264 * 3 2 1 32 32 H 1.09001 * 109.46969 * 300.00088 * 3 2 1 33 33 H 1.08999 * 109.47486 * 64.60782 * 4 3 2 34 34 H 1.09009 * 109.47295 * 304.60870 * 4 3 2 35 35 H 0.97002 * 119.99714 * 180.02562 * 9 8 6 36 36 H 1.08997 * 109.47112 * 323.73311 * 14 5 4 37 37 H 1.09001 * 109.47071 * 203.73399 * 14 5 4 38 38 H 1.08000 * 119.96955 * 0.02562 * 16 15 14 39 39 H 1.08002 * 119.94598 * 179.97438 * 17 16 15 40 40 H 1.08004 * 119.97197 * 180.02562 * 18 17 16 41 41 H 0.96699 * 114.00072 * 271.55671 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5699 1.4426 -0.0006 5 7 4.0583 2.8194 0.1104 6 6 4.2001 3.5882 -1.0138 7 1 4.5801 3.1488 -1.9242 8 6 3.8554 4.9326 -0.9831 9 7 4.3222 5.7527 -1.9007 10 14 2.7290 5.5776 0.3603 11 1 3.5474 6.1057 1.4812 12 1 1.8785 6.6651 -0.1869 13 1 1.8657 4.4749 0.8542 14 6 4.3949 3.3734 1.4241 15 6 5.7988 2.9699 1.7948 16 6 6.0093 1.9046 2.6491 17 6 7.2969 1.5343 2.9900 18 6 8.3772 2.2283 2.4766 19 6 8.1722 3.2940 1.6221 20 6 9.3499 4.0502 1.0635 21 9 10.5363 3.4917 1.5510 22 9 9.3359 3.9697 -0.3331 23 9 9.2708 5.3912 1.4541 24 6 6.8808 3.6681 1.2791 25 8 6.6762 4.7200 0.4433 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.6767 1.9564 0.8900 32 1 1.6766 1.9564 -0.8900 33 1 3.9329 1.0021 -0.9292 34 1 3.9337 0.8588 0.8450 35 1 4.0817 6.6921 -1.8790 36 1 3.6980 2.9902 2.1695 37 1 4.3269 4.4607 1.3882 38 1 5.1672 1.3608 3.0510 39 1 7.4593 0.7016 3.6583 40 1 9.3822 1.9369 2.7440 41 1 6.6156 4.4746 -0.4901 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233418992.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:40 Heat of formation + Delta-G solvation = -174.238489 kcal Electronic energy + Delta-G solvation = -27997.345552 eV Core-core repulsion = 23655.180449 eV Total energy + Delta-G solvation = -4342.165103 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.134 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -51.16859 -48.69994 -48.62784 -40.99964 -38.11217 -37.52438 -35.55403 -33.92959 -32.85869 -31.32339 -29.64093 -27.38421 -26.92511 -25.64659 -23.28527 -22.83694 -22.26396 -21.47751 -19.69413 -19.49304 -19.40064 -18.77443 -18.43460 -17.39957 -16.71392 -16.45313 -16.15373 -15.80745 -15.57149 -15.50993 -15.35142 -15.16512 -15.07307 -14.82570 -14.81609 -14.64606 -14.58716 -14.21857 -13.67347 -13.55471 -13.44367 -13.21725 -13.09732 -12.79370 -12.70770 -12.55252 -12.17111 -11.85021 -11.82405 -11.71236 -11.49746 -11.42659 -11.24102 -10.61581 -10.08471 -9.55479 -8.71597 -8.14961 -5.54919 -0.03206 0.27659 1.33020 1.40965 1.48793 1.67014 2.44325 2.46842 2.72620 3.04759 3.17094 3.31875 3.41563 3.50732 3.90287 4.03227 4.19395 4.26935 4.28748 4.37902 4.44444 4.49973 4.58663 4.74622 4.79869 4.88733 4.96057 5.03805 5.08048 5.12443 5.20704 5.20972 5.36294 5.42206 5.52979 5.53516 5.65253 5.81411 5.99752 6.24315 6.74556 7.04240 7.67851 8.11145 9.02575 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.014170 B = 0.005198 C = 0.004270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1975.462488 B = 5385.735562 C = 6555.075203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.115 4.115 3 C -0.132 4.132 4 C 0.150 3.850 5 N -0.607 5.607 6 C -0.253 4.253 7 H 0.046 0.954 8 C 0.012 3.988 9 N -0.935 5.935 10 Si 0.922 3.078 11 H -0.288 1.288 12 H -0.318 1.318 13 H -0.252 1.252 14 C 0.169 3.831 15 C -0.136 4.136 16 C -0.065 4.065 17 C -0.122 4.122 18 C -0.067 4.067 19 C -0.236 4.236 20 C 0.515 3.485 21 F -0.173 7.173 22 F -0.187 7.187 23 F -0.185 7.185 24 C 0.154 3.846 25 O -0.501 6.501 26 H 0.050 0.950 27 H 0.042 0.958 28 H 0.068 0.932 29 H 0.061 0.939 30 H 0.075 0.925 31 H 0.044 0.956 32 H 0.033 0.967 33 H 0.038 0.962 34 H 0.070 0.930 35 H 0.259 0.741 36 H 0.073 0.927 37 H 0.044 0.956 38 H 0.159 0.841 39 H 0.176 0.824 40 H 0.161 0.839 41 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.929 -12.850 11.552 17.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.153 4.153 3 C -0.172 4.172 4 C 0.026 3.974 5 N -0.328 5.328 6 C -0.382 4.382 7 H 0.063 0.937 8 C -0.186 4.186 9 N -0.578 5.578 10 Si 0.753 3.247 11 H -0.216 1.216 12 H -0.248 1.248 13 H -0.176 1.176 14 C 0.044 3.956 15 C -0.139 4.139 16 C -0.084 4.084 17 C -0.139 4.139 18 C -0.085 4.085 19 C -0.238 4.238 20 C 0.461 3.539 21 F -0.154 7.154 22 F -0.169 7.169 23 F -0.166 7.166 24 C 0.107 3.893 25 O -0.315 6.315 26 H 0.069 0.931 27 H 0.061 0.939 28 H 0.087 0.913 29 H 0.079 0.921 30 H 0.093 0.907 31 H 0.063 0.937 32 H 0.052 0.948 33 H 0.057 0.943 34 H 0.088 0.912 35 H 0.068 0.932 36 H 0.091 0.909 37 H 0.062 0.938 38 H 0.177 0.823 39 H 0.194 0.806 40 H 0.178 0.822 41 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges 3.946 -12.351 11.937 17.624 hybrid contribution -0.351 1.358 -0.748 1.589 sum 3.596 -10.993 11.189 16.093 Atomic orbital electron populations 1.21764 0.95804 1.01934 1.01243 1.21447 0.95944 0.95506 1.02368 1.22081 0.98009 0.96883 1.00211 1.21043 0.92025 0.84443 0.99892 1.44228 1.74565 1.12112 1.01920 1.18483 1.37328 0.91362 0.91051 0.93682 1.25808 0.98250 0.97017 0.97561 1.69903 1.45771 1.04052 1.38038 0.86210 0.80518 0.77636 0.80325 1.21591 1.24773 1.17596 1.20156 0.90135 0.97467 0.87819 1.21263 0.96883 0.96983 0.98819 1.21526 0.99139 0.93785 0.93908 1.21501 0.90663 1.00957 1.00786 1.21182 1.02091 0.91718 0.93513 1.20494 0.91171 1.03064 1.09094 1.18226 0.82818 0.77399 0.75473 1.93130 1.49657 1.84953 1.87656 1.93186 1.96699 1.96114 1.30865 1.93190 1.96403 1.36319 1.90719 1.18365 0.90901 0.87220 0.92768 1.84675 1.94358 1.30673 1.21764 0.93098 0.93891 0.91321 0.92055 0.90664 0.93731 0.94826 0.94334 0.91155 0.93178 0.90930 0.93842 0.82335 0.80650 0.82193 0.73772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.28 9.91 71.98 0.71 -2.56 16 2 C -0.11 -2.74 5.93 30.60 0.18 -2.55 16 3 C -0.13 -4.28 5.52 30.59 0.17 -4.11 16 4 C 0.15 5.17 5.69 86.38 0.49 5.67 16 5 N -0.61 -25.66 2.05 -706.34 -1.45 -27.11 16 6 C -0.25 -13.06 8.49 84.03 0.71 -12.35 16 7 H 0.05 2.62 8.06 -2.91 -0.02 2.60 16 8 C 0.01 0.66 4.92 84.86 0.42 1.08 16 9 N -0.93 -55.54 13.97 21.65 0.30 -55.24 16 10 Si 0.92 45.62 24.95 68.60 1.71 47.33 16 11 H -0.29 -14.34 6.66 99.48 0.66 -13.68 16 12 H -0.32 -16.38 7.11 99.48 0.71 -15.67 16 13 H -0.25 -11.63 7.11 99.48 0.71 -10.93 16 14 C 0.17 6.66 4.02 85.63 0.34 7.00 16 15 C -0.14 -4.72 5.46 -19.77 -0.11 -4.83 16 16 C -0.07 -1.58 9.67 22.25 0.22 -1.37 16 17 C -0.12 -2.41 10.04 22.28 0.22 -2.18 16 18 C -0.07 -1.60 9.43 22.25 0.21 -1.39 16 19 C -0.24 -7.70 5.38 -19.77 -0.11 -7.81 16 20 C 0.51 17.20 2.99 71.24 0.21 17.41 16 21 F -0.17 -4.86 15.97 44.97 0.72 -4.14 16 22 F -0.19 -6.84 16.96 44.97 0.76 -6.08 16 23 F -0.18 -6.82 16.94 44.97 0.76 -6.06 16 24 C 0.15 5.92 6.56 22.51 0.15 6.06 16 25 O -0.50 -23.02 11.01 -92.44 -1.02 -24.04 16 26 H 0.05 1.10 8.14 -2.38 -0.02 1.08 16 27 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 28 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 29 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 30 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 33 H 0.04 1.39 8.08 -2.39 -0.02 1.37 16 34 H 0.07 1.97 8.04 -2.38 -0.02 1.95 16 35 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 36 H 0.07 2.45 7.99 -2.39 -0.02 2.43 16 37 H 0.04 2.02 3.26 -2.39 -0.01 2.01 16 38 H 0.16 2.84 8.04 -2.91 -0.02 2.82 16 39 H 0.18 1.90 8.06 -2.91 -0.02 1.88 16 40 H 0.16 2.91 7.15 -2.91 -0.02 2.89 16 41 H 0.40 19.63 7.83 -74.06 -0.58 19.05 16 Total: -1.00 -63.40 348.56 6.05 -57.35 By element: Atomic # 1 Polarization: 19.49 SS G_CDS: 0.43 Total: 19.92 kcal Atomic # 6 Polarization: -5.76 SS G_CDS: 3.83 Total: -1.93 kcal Atomic # 7 Polarization: -81.20 SS G_CDS: -1.15 Total: -82.35 kcal Atomic # 8 Polarization: -23.02 SS G_CDS: -1.02 Total: -24.04 kcal Atomic # 9 Polarization: -18.53 SS G_CDS: 2.24 Total: -16.28 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 1.71 Total: 47.33 kcal Total: -63.40 6.05 -57.35 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233418992.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.892 kcal (2) G-P(sol) polarization free energy of solvation -63.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -180.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds