Wall clock time and date at job start Tue Mar 31 2020 12:53:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47310 * 2 1 4 4 C 1.50700 * 109.46812 * 120.00297 * 2 1 3 5 5 O 1.21287 * 119.99444 * 239.99643 * 4 2 1 6 6 N 1.34776 * 120.00275 * 60.00106 * 4 2 1 7 7 C 1.47061 * 136.06031 * 359.62011 * 6 4 2 8 8 C 1.53754 * 87.88934 * 152.96761 * 7 6 4 9 9 O 1.42894 * 114.26672 * 139.79467 * 8 7 6 10 10 C 1.35659 * 117.00470 * 108.11667 * 9 8 7 11 11 C 1.39158 * 119.91047 * 173.74667 * 10 9 8 12 12 C 1.37596 * 120.09719 * 179.76578 * 11 10 9 13 13 C 1.39949 * 119.89866 * 0.50494 * 12 11 10 14 14 C 1.47579 * 120.09223 * 179.72372 * 13 12 11 15 15 O 1.21819 * 120.00140 * 180.02562 * 14 13 12 16 16 C 1.41764 * 119.99860 * 0.02562 * 14 13 12 17 17 H 1.08006 * 119.99924 * 0.02562 * 16 14 13 18 18 C 1.40341 * 120.00104 * 180.02562 * 16 14 13 19 19 N 1.30531 * 119.99716 * 359.97438 * 18 16 14 20 20 Si 1.86799 * 120.00070 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.47090 * 89.99920 * 20 18 16 22 22 H 1.48493 * 109.46988 * 209.99699 * 20 18 16 23 23 H 1.48494 * 109.47060 * 330.00220 * 20 18 16 24 24 C 1.39946 * 119.82029 * 359.74533 * 13 12 11 25 25 C 1.37597 * 119.90257 * 0.02562 * 24 13 12 26 26 C 1.47071 * 136.05398 * 179.97438 * 6 4 2 27 27 H 1.08998 * 109.47480 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47115 * 299.99936 * 1 2 3 29 29 H 1.08992 * 109.47211 * 59.99852 * 1 2 3 30 30 H 1.09004 * 109.47001 * 239.99536 * 2 1 3 31 31 H 1.08997 * 109.46816 * 180.02562 * 3 2 1 32 32 H 1.09000 * 109.46794 * 300.00321 * 3 2 1 33 33 H 1.09002 * 109.46980 * 59.99981 * 3 2 1 34 34 H 1.09000 * 113.46981 * 267.70323 * 7 6 4 35 35 H 1.09002 * 113.46232 * 38.13895 * 7 6 4 36 36 H 1.09002 * 114.39685 * 272.67684 * 8 7 6 37 37 H 1.08004 * 119.95106 * 359.97438 * 11 10 9 38 38 H 1.08001 * 120.05087 * 180.25410 * 12 11 10 39 39 H 0.97000 * 119.99798 * 180.02562 * 19 18 16 40 40 H 1.07998 * 120.05166 * 179.97438 * 24 13 12 41 41 H 1.07994 * 119.95728 * 179.97438 * 25 24 13 42 42 H 1.08998 * 113.47105 * 321.86014 * 26 6 4 43 43 H 1.09006 * 113.46725 * 92.30402 * 26 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7105 1.2304 5 8 2.7296 -0.1210 2.0288 6 7 1.7067 -2.0008 1.4437 7 6 0.9103 -3.0213 0.7458 8 6 1.8014 -4.0864 1.4057 9 8 1.0965 -5.2454 1.8550 10 6 1.2793 -6.3896 1.1496 11 6 0.7280 -7.5825 1.6072 12 6 0.9069 -8.7444 0.8921 13 6 1.6535 -8.7272 -0.2914 14 6 1.8532 -9.9720 -1.0585 15 8 2.5038 -9.9552 -2.0883 16 6 1.2880 -11.1874 -0.5970 17 1 0.7108 -11.2022 0.3158 18 6 1.4783 -12.3713 -1.3261 19 7 2.1754 -12.3533 -2.4295 20 14 0.7340 -13.9729 -0.7175 21 1 -0.6277 -14.1341 -1.2877 22 1 1.5878 -15.1098 -1.1461 23 1 0.6502 -13.9480 0.7648 24 6 2.2107 -7.5263 -0.7454 25 6 2.0229 -6.3681 -0.0267 26 6 1.9864 -3.0062 2.4800 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 1.8933 -0.5139 -0.8900 31 1 3.1300 1.4424 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 -0.1285 -3.0605 1.0737 35 1 1.0092 -2.9819 -0.3391 36 1 2.7082 -4.3227 0.8489 37 1 0.1560 -7.5958 2.5232 38 1 0.4752 -9.6690 1.2458 39 1 2.3067 -13.1715 -2.9337 40 1 2.7879 -7.5088 -1.6580 41 1 2.4528 -5.4410 -0.3760 42 1 3.0019 -2.9540 2.8726 43 1 1.2315 -3.0414 3.2656 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233527212.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:53:01 Heat of formation + Delta-G solvation = -51.575266 kcal Electronic energy + Delta-G solvation = -25234.415732 eV Core-core repulsion = 21439.426446 eV Total energy + Delta-G solvation = -3794.989286 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.12002 -39.63488 -38.32186 -37.04676 -35.57125 -34.82710 -32.74081 -30.68338 -30.18648 -29.08477 -27.52424 -26.70161 -26.40844 -24.32016 -22.71331 -22.49268 -20.79624 -19.69183 -19.23740 -18.33270 -17.52630 -16.78044 -16.43074 -16.06615 -15.57077 -15.24000 -14.98059 -14.73800 -14.36959 -14.05370 -13.74874 -13.61339 -13.32735 -13.17838 -13.00743 -12.87941 -12.68409 -12.56474 -12.40781 -12.19252 -11.95623 -11.80058 -11.54573 -11.47411 -11.39962 -11.24135 -11.03136 -10.63750 -10.39779 -10.39315 -10.08569 -9.99397 -9.14226 -9.02267 -8.52150 -7.58825 -7.53960 -6.35702 -4.96007 1.72672 1.91358 2.24181 2.30093 3.01675 3.09907 3.12998 3.30371 3.79990 3.94250 3.96556 4.04758 4.38691 4.46678 4.56053 4.58944 4.74503 4.83746 4.98937 5.09965 5.18291 5.20199 5.23944 5.29844 5.31226 5.33481 5.45188 5.46679 5.58695 5.73302 5.75613 5.83076 5.88216 5.96876 6.05283 6.21787 6.54080 6.74302 6.95729 7.18560 7.21910 7.29396 7.30444 7.70186 7.78369 7.97897 8.73955 8.78447 10.25771 10.47682 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.032561 B = 0.002175 C = 0.002112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.725100 B =12871.525722 C =13252.819433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.109 4.109 3 C -0.133 4.133 4 C 0.551 3.449 5 O -0.537 6.537 6 N -0.644 5.644 7 C 0.081 3.919 8 C 0.047 3.953 9 O -0.298 6.298 10 C 0.105 3.895 11 C -0.160 4.160 12 C -0.057 4.057 13 C -0.132 4.132 14 C 0.387 3.613 15 O -0.544 6.544 16 C -0.516 4.516 17 H 0.075 0.925 18 C 0.079 3.921 19 N -0.734 5.734 20 Si 0.907 3.093 21 H -0.268 1.268 22 H -0.277 1.277 23 H -0.261 1.261 24 C -0.056 4.056 25 C -0.217 4.217 26 C 0.108 3.892 27 H 0.062 0.938 28 H 0.060 0.940 29 H 0.070 0.930 30 H 0.098 0.902 31 H 0.062 0.938 32 H 0.063 0.937 33 H 0.062 0.938 34 H 0.098 0.902 35 H 0.087 0.913 36 H 0.118 0.882 37 H 0.123 0.877 38 H 0.137 0.863 39 H 0.274 0.726 40 H 0.128 0.872 41 H 0.119 0.881 42 H 0.088 0.912 43 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.609 18.936 5.879 20.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.130 4.130 3 C -0.190 4.190 4 C 0.342 3.658 5 O -0.413 6.413 6 N -0.381 5.381 7 C -0.042 4.042 8 C -0.011 4.011 9 O -0.211 6.211 10 C 0.061 3.939 11 C -0.178 4.178 12 C -0.076 4.076 13 C -0.133 4.133 14 C 0.283 3.717 15 O -0.434 6.434 16 C -0.547 4.547 17 H 0.093 0.907 18 C -0.145 4.145 19 N -0.363 5.363 20 Si 0.730 3.270 21 H -0.194 1.194 22 H -0.202 1.202 23 H -0.185 1.185 24 C -0.075 4.075 25 C -0.235 4.235 26 C -0.014 4.014 27 H 0.081 0.919 28 H 0.079 0.921 29 H 0.089 0.911 30 H 0.116 0.884 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.116 0.884 35 H 0.105 0.895 36 H 0.135 0.865 37 H 0.141 0.859 38 H 0.155 0.845 39 H 0.085 0.915 40 H 0.146 0.854 41 H 0.137 0.863 42 H 0.106 0.894 43 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -3.887 19.495 5.798 20.707 hybrid contribution -0.391 -0.760 0.233 0.886 sum -4.278 18.734 6.031 20.140 Atomic orbital electron populations 1.21826 0.92700 1.02828 1.03018 1.21264 0.97805 0.97811 0.96138 1.21632 1.01885 0.93266 1.02262 1.20305 0.79502 0.78304 0.87699 1.90719 1.38484 1.64266 1.47809 1.49208 1.52056 1.09853 1.27007 1.23705 0.97329 0.83933 0.99231 1.24193 0.96287 0.83472 0.97193 1.85999 1.65543 1.16269 1.53261 1.19086 0.97803 0.85415 0.91558 1.20357 1.05250 0.90165 1.02047 1.21421 0.95647 0.97033 0.93462 1.21866 0.97332 0.97769 0.96357 1.18078 0.82552 0.85693 0.85343 1.90505 1.40632 1.87125 1.25138 1.20941 1.31153 0.93623 1.09009 0.90722 1.26017 0.93665 1.00804 0.93980 1.69957 1.26623 1.28730 1.10979 0.86369 0.79593 0.80708 0.80291 1.19358 1.20156 1.18457 1.21193 0.96558 0.91105 0.98595 1.21065 1.05785 0.99462 0.97217 1.23103 1.03313 0.82476 0.92555 0.91909 0.92079 0.91129 0.88354 0.91854 0.91766 0.91895 0.88351 0.89479 0.86481 0.85857 0.84496 0.91450 0.85422 0.86296 0.89358 0.88562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 9.08 37.16 0.34 -0.58 16 2 C -0.11 -0.85 3.14 -91.77 -0.29 -1.14 16 3 C -0.13 -1.00 8.48 37.16 0.32 -0.69 16 4 C 0.55 6.12 7.40 -10.99 -0.08 6.03 16 5 O -0.54 -7.95 16.76 5.55 0.09 -7.86 16 6 N -0.64 -6.31 3.64 -185.10 -0.67 -6.98 16 7 C 0.08 0.67 6.57 -8.38 -0.06 0.62 16 8 C 0.05 0.47 4.02 -26.09 -0.11 0.36 16 9 O -0.30 -3.81 10.18 -18.68 -0.19 -4.00 16 10 C 0.11 1.62 6.70 -38.89 -0.26 1.36 16 11 C -0.16 -2.59 9.97 -39.47 -0.39 -2.98 16 12 C -0.06 -1.09 9.43 -39.17 -0.37 -1.46 16 13 C -0.13 -2.96 5.89 -104.81 -0.62 -3.58 16 14 C 0.39 10.65 6.91 -34.43 -0.24 10.41 16 15 O -0.54 -16.91 14.89 5.08 0.08 -16.84 16 16 C -0.52 -13.74 8.86 -37.44 -0.33 -14.07 16 17 H 0.07 1.78 6.01 -52.48 -0.32 1.46 16 18 C 0.08 2.07 5.50 -17.31 -0.10 1.97 16 19 N -0.73 -20.71 11.73 55.57 0.65 -20.05 16 20 Si 0.91 18.73 29.56 -169.99 -5.03 13.70 16 21 H -0.27 -5.43 7.11 56.52 0.40 -5.02 16 22 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 23 H -0.26 -5.20 7.11 56.52 0.40 -4.80 16 24 C -0.06 -1.12 9.59 -39.18 -0.38 -1.49 16 25 C -0.22 -3.45 9.00 -39.47 -0.36 -3.81 16 26 C 0.11 1.03 8.45 -8.52 -0.07 0.96 16 27 H 0.06 0.38 6.33 -51.93 -0.33 0.05 16 28 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.06 0.53 8.10 -51.93 -0.42 0.11 16 32 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.06 0.53 8.10 -51.93 -0.42 0.11 16 34 H 0.10 0.74 8.10 -51.93 -0.42 0.32 16 35 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.12 1.16 5.98 -51.93 -0.31 0.85 16 37 H 0.12 1.70 8.06 -52.48 -0.42 1.27 16 38 H 0.14 2.49 6.19 -52.49 -0.33 2.16 16 39 H 0.27 6.92 8.29 -40.82 -0.34 6.59 16 40 H 0.13 2.62 7.65 -52.49 -0.40 2.22 16 41 H 0.12 1.52 5.91 -52.49 -0.31 1.21 16 42 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.10 0.85 8.14 -51.93 -0.42 0.42 16 LS Contribution 362.75 15.07 5.47 5.47 Total: -1.00 -33.87 362.75 -8.35 -42.22 By element: Atomic # 1 Polarization: 8.19 SS G_CDS: -5.77 Total: 2.42 kcal Atomic # 6 Polarization: -5.10 SS G_CDS: -2.98 Total: -8.08 kcal Atomic # 7 Polarization: -27.01 SS G_CDS: -0.02 Total: -27.03 kcal Atomic # 8 Polarization: -28.68 SS G_CDS: -0.02 Total: -28.70 kcal Atomic # 14 Polarization: 18.73 SS G_CDS: -5.03 Total: 13.70 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -33.87 -8.35 -42.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233527212.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.352 kcal (2) G-P(sol) polarization free energy of solvation -33.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds