Wall clock time and date at job start Tue Mar 31 2020 12:53:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47310 * 2 1 4 4 C 1.50700 * 109.46812 * 120.00297 * 2 1 3 5 5 O 1.21287 * 119.99444 * 239.99643 * 4 2 1 6 6 N 1.34776 * 120.00275 * 60.00106 * 4 2 1 7 7 C 1.47061 * 136.06031 * 359.62011 * 6 4 2 8 8 C 1.53754 * 87.88934 * 152.96761 * 7 6 4 9 9 O 1.42894 * 114.26672 * 139.79467 * 8 7 6 10 10 C 1.35659 * 117.00470 * 108.11667 * 9 8 7 11 11 C 1.39158 * 119.91047 * 173.74667 * 10 9 8 12 12 C 1.37596 * 120.09719 * 179.76578 * 11 10 9 13 13 C 1.39949 * 119.89866 * 0.50494 * 12 11 10 14 14 C 1.47579 * 120.09223 * 179.72372 * 13 12 11 15 15 O 1.21819 * 120.00140 * 180.02562 * 14 13 12 16 16 C 1.41764 * 119.99860 * 0.02562 * 14 13 12 17 17 H 1.08006 * 119.99924 * 0.02562 * 16 14 13 18 18 C 1.40341 * 120.00104 * 180.02562 * 16 14 13 19 19 N 1.30531 * 119.99716 * 359.97438 * 18 16 14 20 20 Si 1.86799 * 120.00070 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.47090 * 89.99920 * 20 18 16 22 22 H 1.48493 * 109.46988 * 209.99699 * 20 18 16 23 23 H 1.48494 * 109.47060 * 330.00220 * 20 18 16 24 24 C 1.39946 * 119.82029 * 359.74533 * 13 12 11 25 25 C 1.37597 * 119.90257 * 0.02562 * 24 13 12 26 26 C 1.47071 * 136.05398 * 179.97438 * 6 4 2 27 27 H 1.08998 * 109.47480 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47115 * 299.99936 * 1 2 3 29 29 H 1.08992 * 109.47211 * 59.99852 * 1 2 3 30 30 H 1.09004 * 109.47001 * 239.99536 * 2 1 3 31 31 H 1.08997 * 109.46816 * 180.02562 * 3 2 1 32 32 H 1.09000 * 109.46794 * 300.00321 * 3 2 1 33 33 H 1.09002 * 109.46980 * 59.99981 * 3 2 1 34 34 H 1.09000 * 113.46981 * 267.70323 * 7 6 4 35 35 H 1.09002 * 113.46232 * 38.13895 * 7 6 4 36 36 H 1.09002 * 114.39685 * 272.67684 * 8 7 6 37 37 H 1.08004 * 119.95106 * 359.97438 * 11 10 9 38 38 H 1.08001 * 120.05087 * 180.25410 * 12 11 10 39 39 H 0.97000 * 119.99798 * 180.02562 * 19 18 16 40 40 H 1.07998 * 120.05166 * 179.97438 * 24 13 12 41 41 H 1.07994 * 119.95728 * 179.97438 * 25 24 13 42 42 H 1.08998 * 113.47105 * 321.86014 * 26 6 4 43 43 H 1.09006 * 113.46725 * 92.30402 * 26 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7105 1.2304 5 8 2.7296 -0.1210 2.0288 6 7 1.7067 -2.0008 1.4437 7 6 0.9103 -3.0213 0.7458 8 6 1.8014 -4.0864 1.4057 9 8 1.0965 -5.2454 1.8550 10 6 1.2793 -6.3896 1.1496 11 6 0.7280 -7.5825 1.6072 12 6 0.9069 -8.7444 0.8921 13 6 1.6535 -8.7272 -0.2914 14 6 1.8532 -9.9720 -1.0585 15 8 2.5038 -9.9552 -2.0883 16 6 1.2880 -11.1874 -0.5970 17 1 0.7108 -11.2022 0.3158 18 6 1.4783 -12.3713 -1.3261 19 7 2.1754 -12.3533 -2.4295 20 14 0.7340 -13.9729 -0.7175 21 1 -0.6277 -14.1341 -1.2877 22 1 1.5878 -15.1098 -1.1461 23 1 0.6502 -13.9480 0.7648 24 6 2.2107 -7.5263 -0.7454 25 6 2.0229 -6.3681 -0.0267 26 6 1.9864 -3.0062 2.4800 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 1.8933 -0.5139 -0.8900 31 1 3.1300 1.4424 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 -0.1285 -3.0605 1.0737 35 1 1.0092 -2.9819 -0.3391 36 1 2.7082 -4.3227 0.8489 37 1 0.1560 -7.5958 2.5232 38 1 0.4752 -9.6690 1.2458 39 1 2.3067 -13.1715 -2.9337 40 1 2.7879 -7.5088 -1.6580 41 1 2.4528 -5.4410 -0.3760 42 1 3.0019 -2.9540 2.8726 43 1 1.2315 -3.0414 3.2656 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233527212.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:53:00 Heat of formation + Delta-G solvation = -73.212309 kcal Electronic energy + Delta-G solvation = -25235.353984 eV Core-core repulsion = 21439.426446 eV Total energy + Delta-G solvation = -3795.927539 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.99397 -40.76432 -39.55415 -38.50386 -37.11118 -35.48892 -34.76894 -32.08549 -31.46903 -30.23047 -28.56378 -28.07638 -27.11859 -25.28891 -24.20814 -23.55405 -21.86201 -21.36889 -20.00994 -19.42630 -18.58271 -18.23048 -17.59904 -17.24581 -16.96218 -16.31122 -15.97706 -15.95820 -15.68753 -15.23428 -14.96298 -14.58838 -14.48000 -14.39122 -14.26789 -14.02273 -13.72167 -13.57114 -13.45443 -13.18811 -13.13705 -12.98675 -12.86389 -12.79262 -12.49325 -12.31314 -12.11823 -12.03932 -12.03576 -11.58352 -11.42484 -10.97831 -10.90830 -9.95202 -9.89986 -9.59932 -9.03217 -8.32835 -7.05455 0.23818 0.50812 1.39928 1.40245 1.44409 1.46857 1.56956 2.21340 2.22515 2.32729 2.85778 3.09669 3.29903 3.62934 3.77181 3.84224 3.90674 3.97624 4.00898 4.05257 4.24714 4.31630 4.35107 4.43507 4.48525 4.53297 4.56730 4.65219 4.72310 4.74884 4.83578 4.89409 4.89583 5.04724 5.14265 5.22250 5.25213 5.29644 5.33338 5.48245 5.79119 5.80987 6.00427 6.42600 6.53511 6.71904 6.82621 6.96467 8.27052 8.50831 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.032561 B = 0.002175 C = 0.002112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.725100 B =12871.525722 C =13252.819433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.106 4.106 3 C -0.132 4.132 4 C 0.545 3.455 5 O -0.583 6.583 6 N -0.644 5.644 7 C 0.089 3.911 8 C 0.039 3.961 9 O -0.291 6.291 10 C 0.129 3.871 11 C -0.154 4.154 12 C -0.055 4.055 13 C -0.178 4.178 14 C 0.363 3.637 15 O -0.601 6.601 16 C -0.543 4.543 17 H 0.097 0.903 18 C 0.021 3.979 19 N -0.789 5.789 20 Si 0.995 3.005 21 H -0.258 1.258 22 H -0.271 1.271 23 H -0.244 1.244 24 C -0.068 4.068 25 C -0.205 4.205 26 C 0.105 3.895 27 H 0.068 0.932 28 H 0.052 0.948 29 H 0.088 0.912 30 H 0.116 0.884 31 H 0.048 0.952 32 H 0.088 0.912 33 H 0.049 0.951 34 H 0.113 0.887 35 H 0.108 0.892 36 H 0.122 0.878 37 H 0.156 0.844 38 H 0.141 0.859 39 H 0.281 0.719 40 H 0.107 0.893 41 H 0.154 0.846 42 H 0.084 0.916 43 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.680 19.804 7.371 22.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.127 4.127 3 C -0.190 4.190 4 C 0.337 3.663 5 O -0.463 6.463 6 N -0.381 5.381 7 C -0.033 4.033 8 C -0.018 4.018 9 O -0.203 6.203 10 C 0.084 3.916 11 C -0.173 4.173 12 C -0.074 4.074 13 C -0.179 4.179 14 C 0.263 3.737 15 O -0.496 6.496 16 C -0.573 4.573 17 H 0.115 0.885 18 C -0.197 4.197 19 N -0.418 5.418 20 Si 0.813 3.187 21 H -0.182 1.182 22 H -0.196 1.196 23 H -0.167 1.167 24 C -0.087 4.087 25 C -0.224 4.224 26 C -0.017 4.017 27 H 0.087 0.913 28 H 0.071 0.929 29 H 0.107 0.893 30 H 0.134 0.866 31 H 0.067 0.933 32 H 0.106 0.894 33 H 0.068 0.932 34 H 0.130 0.870 35 H 0.126 0.874 36 H 0.139 0.861 37 H 0.174 0.826 38 H 0.158 0.842 39 H 0.092 0.908 40 H 0.125 0.875 41 H 0.171 0.829 42 H 0.103 0.897 43 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -5.985 20.373 7.307 22.456 hybrid contribution 0.268 -0.827 -0.145 0.881 sum -5.717 19.546 7.162 21.588 Atomic orbital electron populations 1.21824 0.91216 1.03376 1.03549 1.21346 0.98892 0.97437 0.94995 1.21635 1.01009 0.93544 1.02774 1.20971 0.78750 0.78433 0.88159 1.90697 1.40668 1.65373 1.49579 1.49249 1.51850 1.09731 1.27230 1.23788 0.97356 0.81888 1.00299 1.24391 0.96830 0.82642 0.97970 1.86022 1.65525 1.16052 1.52709 1.19106 0.95592 0.86202 0.90694 1.20594 1.04850 0.89291 1.02538 1.21396 0.95021 0.98523 0.92420 1.21462 1.01462 0.96607 0.98354 1.18832 0.81531 0.88256 0.85040 1.90441 1.43082 1.88517 1.27590 1.21481 1.31588 0.94191 1.10078 0.88458 1.27302 0.93493 1.05300 0.93652 1.70112 1.28411 1.30394 1.12843 0.85055 0.78644 0.74611 0.80374 1.18230 1.19583 1.16689 1.21115 0.96892 0.91992 0.98672 1.21249 1.05128 0.99201 0.96773 1.23171 1.03593 0.82173 0.92788 0.91313 0.92916 0.89280 0.86584 0.93266 0.89360 0.93222 0.86952 0.87429 0.86064 0.82597 0.84179 0.90828 0.87452 0.82857 0.89722 0.87583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.35 9.08 71.98 0.65 -0.69 16 2 C -0.11 -1.40 3.14 -11.54 -0.04 -1.44 16 3 C -0.13 -1.82 8.48 71.98 0.61 -1.21 16 4 C 0.54 11.23 7.40 87.66 0.65 11.88 16 5 O -0.58 -17.16 16.76 -3.05 -0.05 -17.22 16 6 N -0.64 -10.95 3.64 -858.40 -3.12 -14.07 16 7 C 0.09 1.11 6.57 83.27 0.55 1.66 16 8 C 0.04 0.64 4.02 31.01 0.12 0.77 16 9 O -0.29 -6.24 10.18 -89.74 -0.91 -7.16 16 10 C 0.13 3.56 6.70 22.72 0.15 3.71 16 11 C -0.15 -4.55 9.97 22.34 0.22 -4.33 16 12 C -0.06 -2.07 9.43 22.53 0.21 -1.85 16 13 C -0.18 -8.21 5.89 -19.98 -0.12 -8.32 16 14 C 0.36 21.06 6.91 25.61 0.18 21.24 16 15 O -0.60 -40.05 14.89 -4.73 -0.07 -40.12 16 16 C -0.54 -29.76 8.86 23.65 0.21 -29.55 16 17 H 0.10 4.66 6.01 -2.91 -0.02 4.64 16 18 C 0.02 1.14 5.50 85.40 0.47 1.61 16 19 N -0.79 -46.46 11.73 21.89 0.26 -46.21 16 20 Si 0.99 38.48 29.56 68.60 2.03 40.50 16 21 H -0.26 -9.47 7.11 99.48 0.71 -8.76 16 22 H -0.27 -10.14 7.11 99.48 0.71 -9.43 16 23 H -0.24 -8.69 7.11 99.48 0.71 -7.98 16 24 C -0.07 -2.77 9.59 22.53 0.22 -2.55 16 25 C -0.21 -6.11 9.00 22.34 0.20 -5.91 16 26 C 0.11 1.73 8.45 83.17 0.70 2.44 16 27 H 0.07 0.57 6.33 -2.39 -0.02 0.56 16 28 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.12 1.15 8.14 -2.38 -0.02 1.13 16 31 H 0.05 0.80 8.10 -2.39 -0.02 0.79 16 32 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.05 0.80 8.10 -2.39 -0.02 0.78 16 34 H 0.11 1.18 8.10 -2.39 -0.02 1.16 16 35 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.12 1.96 5.98 -2.39 -0.01 1.94 16 37 H 0.16 3.59 8.06 -2.91 -0.02 3.57 16 38 H 0.14 4.98 6.19 -2.91 -0.02 4.96 16 39 H 0.28 14.79 8.29 -92.71 -0.77 14.03 16 40 H 0.11 4.69 7.65 -2.91 -0.02 4.67 16 41 H 0.15 3.42 5.91 -2.91 -0.02 3.40 16 42 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 43 H 0.11 1.56 8.14 -2.38 -0.02 1.54 16 Total: -1.00 -79.71 362.75 4.15 -75.56 By element: Atomic # 1 Polarization: 20.23 SS G_CDS: 1.03 Total: 21.26 kcal Atomic # 6 Polarization: -17.55 SS G_CDS: 4.99 Total: -12.55 kcal Atomic # 7 Polarization: -57.41 SS G_CDS: -2.87 Total: -60.28 kcal Atomic # 8 Polarization: -63.45 SS G_CDS: -1.03 Total: -64.49 kcal Atomic # 14 Polarization: 38.48 SS G_CDS: 2.03 Total: 40.50 kcal Total: -79.71 4.15 -75.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233527212.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.345 kcal (2) G-P(sol) polarization free energy of solvation -79.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds