Wall clock time and date at job start Tue Mar 31 2020 12:19:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47134 * 2 1 4 4 C 1.52997 * 109.47050 * 179.97438 * 3 2 1 5 5 N 1.46504 * 109.46875 * 180.02562 * 4 3 2 6 6 C 1.36939 * 119.99881 * 275.31189 * 5 4 3 7 7 H 1.07994 * 120.00368 * 39.44878 * 6 5 4 8 8 C 1.38815 * 119.99880 * 219.44515 * 6 5 4 9 9 N 1.31619 * 120.00070 * 18.78340 * 8 6 5 10 10 Si 1.86797 * 120.00176 * 198.78051 * 8 6 5 11 11 H 1.48510 * 109.46903 * 0.02562 * 10 8 6 12 12 H 1.48495 * 109.47296 * 120.00040 * 10 8 6 13 13 H 1.48497 * 109.46951 * 240.00258 * 10 8 6 14 14 C 1.46494 * 119.99685 * 95.31704 * 5 4 3 15 15 C 1.50701 * 109.47035 * 269.99301 * 14 5 4 16 16 C 1.38165 * 120.02262 * 105.02378 * 15 14 5 17 17 C 1.38246 * 120.05401 * 179.97438 * 16 15 14 18 18 C 1.50696 * 119.94686 * 180.02562 * 17 16 15 19 19 F 1.39901 * 109.47713 * 89.99929 * 18 17 16 20 20 F 1.39899 * 109.47167 * 210.00202 * 18 17 16 21 21 F 1.39906 * 109.46897 * 329.99766 * 18 17 16 22 22 C 1.38289 * 120.11140 * 359.74533 * 17 16 15 23 23 C 1.38120 * 120.05589 * 0.50973 * 22 17 16 24 24 C 1.38708 * 120.03256 * 285.00292 * 15 14 5 25 25 O 1.35904 * 120.05197 * 359.97438 * 24 15 14 26 26 H 1.08997 * 109.47116 * 59.99801 * 1 2 3 27 27 H 1.08998 * 109.47608 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47269 * 299.99622 * 1 2 3 29 29 H 1.09002 * 109.46595 * 240.00045 * 2 1 3 30 30 H 1.09001 * 109.46637 * 120.00126 * 2 1 3 31 31 H 1.09002 * 109.46734 * 60.00051 * 3 2 1 32 32 H 1.09005 * 109.47487 * 300.00382 * 3 2 1 33 33 H 1.09002 * 109.47100 * 60.00533 * 4 3 2 34 34 H 1.08997 * 109.47368 * 300.00302 * 4 3 2 35 35 H 0.96998 * 120.00353 * 179.97438 * 9 8 6 36 36 H 1.09007 * 109.47123 * 150.00029 * 14 5 4 37 37 H 1.08993 * 109.47570 * 30.00036 * 14 5 4 38 38 H 1.08001 * 119.97650 * 359.96094 * 16 15 14 39 39 H 1.07997 * 119.97494 * 180.27336 * 22 17 16 40 40 H 1.08002 * 120.03440 * 179.76146 * 23 22 17 41 41 H 0.96695 * 114.00559 * 270.02074 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 7 4.0583 2.8237 0.0013 6 6 4.1835 3.5062 -1.1793 7 1 3.4352 3.3941 -1.9499 8 6 5.2723 4.3422 -1.3856 9 7 6.3519 4.2119 -0.6441 10 14 5.2054 5.6520 -2.7157 11 1 3.8903 5.5927 -3.4031 12 1 5.3817 6.9919 -2.1003 13 1 6.2906 5.4130 -3.7008 14 6 4.4127 3.4747 1.2649 15 6 3.2004 4.1695 1.8293 16 6 2.5287 3.6225 2.9056 17 6 1.4168 4.2596 3.4242 18 6 0.6863 3.6612 4.5986 19 9 1.2337 4.1531 5.7884 20 9 -0.6678 4.0062 4.5305 21 9 0.8147 2.2684 4.5670 22 6 0.9772 5.4483 2.8709 23 6 1.6422 5.9965 1.7915 24 6 2.7583 5.3589 1.2691 25 8 3.4180 5.8994 0.2109 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.6767 1.9562 0.8900 32 1 1.6767 1.9564 -0.8900 33 1 3.9337 0.9285 -0.8892 34 1 3.9330 0.9287 0.8908 35 1 7.1129 4.7958 -0.7885 36 1 5.2013 4.2062 1.0881 37 1 4.7648 2.7251 1.9735 38 1 2.8723 2.6963 3.3420 39 1 0.1110 5.9464 3.2806 40 1 1.2963 6.9229 1.3572 41 1 4.1266 6.5089 0.4587 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001237141686.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:48 Heat of formation + Delta-G solvation = -160.197954 kcal Electronic energy + Delta-G solvation = -28107.218901 eV Core-core repulsion = 23765.662642 eV Total energy + Delta-G solvation = -4341.556260 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.134 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -50.00207 -47.52182 -47.46821 -39.50639 -36.29361 -36.17145 -34.07444 -31.74749 -30.81329 -30.53310 -27.94324 -25.72693 -25.26603 -23.91121 -22.08866 -21.56839 -20.52575 -20.11845 -18.34073 -18.21869 -17.81091 -17.74207 -16.60678 -15.45167 -14.96708 -14.85450 -14.71373 -14.41351 -14.29153 -14.04054 -13.92516 -13.69539 -13.64247 -13.60512 -13.52998 -13.41526 -12.90795 -12.76583 -12.21493 -12.05270 -11.86871 -11.64047 -11.53599 -11.14813 -10.94366 -10.74795 -10.61982 -10.54135 -10.41369 -10.08478 -10.01112 -9.75743 -9.72075 -8.60549 -8.47185 -8.17610 -6.58555 -5.81123 -3.37648 1.28890 1.65198 2.86361 3.33447 3.42976 3.51212 3.77496 3.94741 4.23168 4.49179 4.61745 4.79861 5.16562 5.21322 5.27789 5.39655 5.41062 5.60412 5.64509 5.70716 5.81288 5.98610 6.02574 6.17725 6.26251 6.32662 6.37384 6.39124 6.39677 6.48658 6.60283 6.62678 6.68535 6.98755 7.03196 7.12433 7.18974 7.48398 7.82677 8.32742 8.50906 9.15294 9.77674 10.34337 11.19734 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.012674 B = 0.005502 C = 0.004405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2208.666840 B = 5088.134878 C = 6355.546995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.122 4.122 3 C -0.137 4.137 4 C 0.148 3.852 5 N -0.570 5.570 6 C -0.228 4.228 7 H 0.054 0.946 8 C 0.027 3.973 9 N -0.894 5.894 10 Si 0.902 3.098 11 H -0.278 1.278 12 H -0.289 1.289 13 H -0.298 1.298 14 C 0.181 3.819 15 C -0.106 4.106 16 C -0.062 4.062 17 C -0.205 4.205 18 C 0.510 3.490 19 F -0.183 7.183 20 F -0.183 7.183 21 F -0.179 7.179 22 C -0.079 4.079 23 C -0.158 4.158 24 C 0.162 3.838 25 O -0.461 6.461 26 H 0.050 0.950 27 H 0.045 0.955 28 H 0.050 0.950 29 H 0.056 0.944 30 H 0.054 0.946 31 H 0.051 0.949 32 H 0.055 0.945 33 H 0.047 0.953 34 H 0.034 0.966 35 H 0.253 0.747 36 H 0.107 0.893 37 H 0.035 0.965 38 H 0.127 0.873 39 H 0.125 0.875 40 H 0.128 0.872 41 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.578 0.012 8.357 11.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.160 4.160 3 C -0.177 4.177 4 C 0.022 3.978 5 N -0.288 5.288 6 C -0.357 4.357 7 H 0.072 0.928 8 C -0.173 4.173 9 N -0.537 5.537 10 Si 0.732 3.268 11 H -0.203 1.203 12 H -0.215 1.215 13 H -0.225 1.225 14 C 0.054 3.946 15 C -0.110 4.110 16 C -0.081 4.081 17 C -0.206 4.206 18 C 0.456 3.544 19 F -0.164 7.164 20 F -0.164 7.164 21 F -0.161 7.161 22 C -0.098 4.098 23 C -0.177 4.177 24 C 0.116 3.884 25 O -0.271 6.271 26 H 0.069 0.931 27 H 0.064 0.936 28 H 0.069 0.931 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.070 0.930 32 H 0.074 0.926 33 H 0.065 0.935 34 H 0.052 0.948 35 H 0.063 0.937 36 H 0.125 0.875 37 H 0.053 0.947 38 H 0.144 0.856 39 H 0.143 0.857 40 H 0.146 0.854 41 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -8.770 -0.293 7.993 11.870 hybrid contribution -0.097 1.006 -0.176 1.026 sum -8.867 0.713 7.817 11.842 Atomic orbital electron populations 1.21757 0.96779 1.00559 1.01524 1.21491 0.95043 0.98296 1.01165 1.22202 0.99437 0.94506 1.01527 1.20937 0.91174 0.86788 0.98923 1.43704 1.75306 1.07927 1.01852 1.18893 1.02434 1.21271 0.93139 0.92794 1.25034 0.94053 1.00519 0.97673 1.69975 1.03205 1.38663 1.41827 0.86269 0.77120 0.81943 0.81446 1.20330 1.21529 1.22520 1.19969 0.91795 0.96574 0.86243 1.21740 1.01501 0.94886 0.92848 1.20713 0.92787 0.98733 0.95860 1.19793 1.01238 1.00281 0.99334 1.18412 0.76942 0.75932 0.83099 1.93195 1.85593 1.87649 1.49983 1.93153 1.34786 1.91988 1.96517 1.93177 1.95663 1.30574 1.96668 1.20492 0.99351 0.94029 0.95953 1.21362 0.97938 1.01338 0.97039 1.18509 0.91691 0.91766 0.86443 1.85095 1.50717 1.63626 1.27626 0.93094 0.93561 0.93129 0.92533 0.92716 0.92986 0.92574 0.93499 0.94758 0.93704 0.87540 0.94675 0.85556 0.85663 0.85370 0.76506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 9.91 37.16 0.37 -1.64 16 2 C -0.12 -1.83 5.93 -26.73 -0.16 -1.98 16 3 C -0.14 -2.49 5.51 -26.73 -0.15 -2.64 16 4 C 0.15 3.00 5.72 -4.04 -0.02 2.98 16 5 N -0.57 -13.15 2.41 -174.61 -0.42 -13.57 16 6 C -0.23 -5.81 8.15 -15.06 -0.12 -5.93 16 7 H 0.05 1.45 7.90 -52.49 -0.41 1.04 16 8 C 0.03 0.67 3.94 -17.43 -0.07 0.61 16 9 N -0.89 -23.55 11.44 55.49 0.63 -22.92 16 10 Si 0.90 20.84 28.80 -169.99 -4.89 15.94 16 11 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 12 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 13 H -0.30 -7.07 7.11 56.52 0.40 -6.67 16 14 C 0.18 3.86 5.15 -5.20 -0.03 3.83 16 15 C -0.11 -1.98 5.27 -104.47 -0.55 -2.53 16 16 C -0.06 -1.03 8.38 -39.61 -0.33 -1.36 16 17 C -0.20 -3.17 5.45 -104.60 -0.57 -3.74 16 18 C 0.51 7.34 3.36 36.00 0.12 7.46 16 19 F -0.18 -2.60 17.30 2.25 0.04 -2.56 16 20 F -0.18 -2.56 16.47 2.25 0.04 -2.52 16 21 F -0.18 -2.65 16.46 2.25 0.04 -2.61 16 22 C -0.08 -1.16 9.39 -39.61 -0.37 -1.53 16 23 C -0.16 -2.45 9.99 -39.43 -0.39 -2.85 16 24 C 0.16 2.95 6.66 -39.22 -0.26 2.69 16 25 O -0.46 -8.91 9.51 -19.44 -0.18 -9.10 16 26 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 27 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.05 0.98 7.28 -51.93 -0.38 0.61 16 32 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.05 0.99 8.08 -51.93 -0.42 0.57 16 34 H 0.03 0.66 7.83 -51.93 -0.41 0.25 16 35 H 0.25 6.47 8.31 -40.82 -0.34 6.13 16 36 H 0.11 2.53 5.42 -51.92 -0.28 2.25 16 37 H 0.03 0.72 7.67 -51.93 -0.40 0.32 16 38 H 0.13 2.00 7.54 -52.49 -0.40 1.60 16 39 H 0.13 1.54 7.61 -52.49 -0.40 1.14 16 40 H 0.13 1.72 8.06 -52.49 -0.42 1.30 16 41 H 0.38 6.18 9.06 45.56 0.41 6.60 16 LS Contribution 350.12 15.07 5.28 5.28 Total: -1.00 -26.91 350.12 -6.79 -33.70 By element: Atomic # 1 Polarization: 9.78 SS G_CDS: -4.77 Total: 5.00 kcal Atomic # 6 Polarization: -4.10 SS G_CDS: -2.54 Total: -6.64 kcal Atomic # 7 Polarization: -36.70 SS G_CDS: 0.21 Total: -36.48 kcal Atomic # 8 Polarization: -8.91 SS G_CDS: -0.18 Total: -9.10 kcal Atomic # 9 Polarization: -7.81 SS G_CDS: 0.11 Total: -7.70 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -4.89 Total: 15.94 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -26.91 -6.79 -33.70 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237141686.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.500 kcal (2) G-P(sol) polarization free energy of solvation -26.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds