Wall clock time and date at job start Tue Mar 31 2020 12:19:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47134 * 2 1 4 4 C 1.52997 * 109.47050 * 179.97438 * 3 2 1 5 5 N 1.46504 * 109.46875 * 180.02562 * 4 3 2 6 6 C 1.36939 * 119.99881 * 275.31189 * 5 4 3 7 7 H 1.07994 * 120.00368 * 39.44878 * 6 5 4 8 8 C 1.38815 * 119.99880 * 219.44515 * 6 5 4 9 9 N 1.31619 * 120.00070 * 18.78340 * 8 6 5 10 10 Si 1.86797 * 120.00176 * 198.78051 * 8 6 5 11 11 H 1.48510 * 109.46903 * 0.02562 * 10 8 6 12 12 H 1.48495 * 109.47296 * 120.00040 * 10 8 6 13 13 H 1.48497 * 109.46951 * 240.00258 * 10 8 6 14 14 C 1.46494 * 119.99685 * 95.31704 * 5 4 3 15 15 C 1.50701 * 109.47035 * 269.99301 * 14 5 4 16 16 C 1.38165 * 120.02262 * 105.02378 * 15 14 5 17 17 C 1.38246 * 120.05401 * 179.97438 * 16 15 14 18 18 C 1.50696 * 119.94686 * 180.02562 * 17 16 15 19 19 F 1.39901 * 109.47713 * 89.99929 * 18 17 16 20 20 F 1.39899 * 109.47167 * 210.00202 * 18 17 16 21 21 F 1.39906 * 109.46897 * 329.99766 * 18 17 16 22 22 C 1.38289 * 120.11140 * 359.74533 * 17 16 15 23 23 C 1.38120 * 120.05589 * 0.50973 * 22 17 16 24 24 C 1.38708 * 120.03256 * 285.00292 * 15 14 5 25 25 O 1.35904 * 120.05197 * 359.97438 * 24 15 14 26 26 H 1.08997 * 109.47116 * 59.99801 * 1 2 3 27 27 H 1.08998 * 109.47608 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47269 * 299.99622 * 1 2 3 29 29 H 1.09002 * 109.46595 * 240.00045 * 2 1 3 30 30 H 1.09001 * 109.46637 * 120.00126 * 2 1 3 31 31 H 1.09002 * 109.46734 * 60.00051 * 3 2 1 32 32 H 1.09005 * 109.47487 * 300.00382 * 3 2 1 33 33 H 1.09002 * 109.47100 * 60.00533 * 4 3 2 34 34 H 1.08997 * 109.47368 * 300.00302 * 4 3 2 35 35 H 0.96998 * 120.00353 * 179.97438 * 9 8 6 36 36 H 1.09007 * 109.47123 * 150.00029 * 14 5 4 37 37 H 1.08993 * 109.47570 * 30.00036 * 14 5 4 38 38 H 1.08001 * 119.97650 * 359.96094 * 16 15 14 39 39 H 1.07997 * 119.97494 * 180.27336 * 22 17 16 40 40 H 1.08002 * 120.03440 * 179.76146 * 23 22 17 41 41 H 0.96695 * 114.00559 * 270.02074 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 7 4.0583 2.8237 0.0013 6 6 4.1835 3.5062 -1.1793 7 1 3.4352 3.3941 -1.9499 8 6 5.2723 4.3422 -1.3856 9 7 6.3519 4.2119 -0.6441 10 14 5.2054 5.6520 -2.7157 11 1 3.8903 5.5927 -3.4031 12 1 5.3817 6.9919 -2.1003 13 1 6.2906 5.4130 -3.7008 14 6 4.4127 3.4747 1.2649 15 6 3.2004 4.1695 1.8293 16 6 2.5287 3.6225 2.9056 17 6 1.4168 4.2596 3.4242 18 6 0.6863 3.6612 4.5986 19 9 1.2337 4.1531 5.7884 20 9 -0.6678 4.0062 4.5305 21 9 0.8147 2.2684 4.5670 22 6 0.9772 5.4483 2.8709 23 6 1.6422 5.9965 1.7915 24 6 2.7583 5.3589 1.2691 25 8 3.4180 5.8994 0.2109 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.6767 1.9562 0.8900 32 1 1.6767 1.9564 -0.8900 33 1 3.9337 0.9285 -0.8892 34 1 3.9330 0.9287 0.8908 35 1 7.1129 4.7958 -0.7885 36 1 5.2013 4.2062 1.0881 37 1 4.7648 2.7251 1.9735 38 1 2.8723 2.6963 3.3420 39 1 0.1110 5.9464 3.2806 40 1 1.2963 6.9229 1.3572 41 1 4.1266 6.5089 0.4587 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001237141686.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:48 Heat of formation + Delta-G solvation = -173.341207 kcal Electronic energy + Delta-G solvation = -28107.788836 eV Core-core repulsion = 23765.662642 eV Total energy + Delta-G solvation = -4342.126194 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.134 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -51.14210 -48.65677 -48.60516 -40.87560 -37.88671 -37.58731 -35.53050 -33.45947 -32.31089 -31.83160 -29.42514 -27.42260 -26.50721 -25.47342 -23.39040 -22.98075 -21.88242 -21.70274 -19.47851 -19.37792 -19.20096 -19.08444 -18.34385 -16.95811 -16.50823 -16.32748 -16.21255 -15.59341 -15.49477 -15.36174 -15.25783 -15.08224 -15.06211 -14.86844 -14.77345 -14.69988 -14.22526 -14.08516 -13.68518 -13.39319 -13.28320 -13.06428 -12.96867 -12.81649 -12.57801 -12.43237 -12.12932 -12.02510 -11.86694 -11.80831 -11.63834 -11.29492 -11.18136 -10.37354 -9.88825 -9.57806 -8.43984 -7.72312 -5.34208 -0.00926 0.35820 1.47764 1.53118 1.63669 1.69240 2.45544 2.62188 2.76067 3.07031 3.40385 3.45063 3.48577 3.80126 3.92777 3.99758 4.15225 4.27192 4.31383 4.42343 4.51708 4.56529 4.67852 4.86657 4.90418 4.97140 5.04654 5.05940 5.07903 5.15462 5.18484 5.24095 5.39658 5.50464 5.58749 5.65289 5.74980 5.78048 5.82032 6.58362 6.98431 7.28384 7.92982 8.46556 9.25092 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.012674 B = 0.005502 C = 0.004405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2208.666840 B = 5088.134878 C = 6355.546995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.117 4.117 3 C -0.120 4.120 4 C 0.146 3.854 5 N -0.585 5.585 6 C -0.232 4.232 7 H 0.032 0.968 8 C 0.001 3.999 9 N -0.918 5.918 10 Si 0.947 3.053 11 H -0.288 1.288 12 H -0.275 1.275 13 H -0.306 1.306 14 C 0.188 3.812 15 C -0.122 4.122 16 C -0.061 4.061 17 C -0.206 4.206 18 C 0.518 3.482 19 F -0.180 7.180 20 F -0.177 7.177 21 F -0.181 7.181 22 C -0.065 4.065 23 C -0.154 4.154 24 C 0.147 3.853 25 O -0.481 6.481 26 H 0.046 0.954 27 H 0.068 0.932 28 H 0.048 0.952 29 H 0.059 0.941 30 H 0.066 0.934 31 H 0.045 0.955 32 H 0.031 0.969 33 H 0.031 0.969 34 H 0.045 0.955 35 H 0.251 0.749 36 H 0.082 0.918 37 H 0.035 0.965 38 H 0.132 0.868 39 H 0.157 0.843 40 H 0.153 0.847 41 H 0.388 0.612 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.518 0.292 9.640 14.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.156 4.156 3 C -0.159 4.159 4 C 0.020 3.980 5 N -0.304 5.304 6 C -0.363 4.363 7 H 0.049 0.951 8 C -0.196 4.196 9 N -0.563 5.563 10 Si 0.777 3.223 11 H -0.213 1.213 12 H -0.201 1.201 13 H -0.234 1.234 14 C 0.062 3.938 15 C -0.126 4.126 16 C -0.080 4.080 17 C -0.208 4.208 18 C 0.464 3.536 19 F -0.161 7.161 20 F -0.158 7.158 21 F -0.163 7.163 22 C -0.084 4.084 23 C -0.172 4.172 24 C 0.101 3.899 25 O -0.292 6.292 26 H 0.065 0.935 27 H 0.087 0.913 28 H 0.067 0.933 29 H 0.078 0.922 30 H 0.084 0.916 31 H 0.064 0.936 32 H 0.050 0.950 33 H 0.050 0.950 34 H 0.063 0.937 35 H 0.061 0.939 36 H 0.099 0.901 37 H 0.053 0.947 38 H 0.150 0.850 39 H 0.175 0.825 40 H 0.170 0.830 41 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -10.733 -0.006 9.305 14.205 hybrid contribution 0.446 0.917 -0.484 1.129 sum -10.287 0.910 8.821 13.581 Atomic orbital electron populations 1.21720 0.95307 1.01960 1.01254 1.21457 0.96296 0.95889 1.01919 1.21973 0.97595 0.96495 0.99879 1.21009 0.92610 0.85724 0.98639 1.43829 1.75903 1.08905 1.01802 1.18761 1.01819 1.21833 0.93856 0.95054 1.25350 0.93718 1.01593 0.98949 1.70058 1.03618 1.39448 1.43173 0.85587 0.75952 0.81120 0.79604 1.21342 1.20080 1.23416 1.19725 0.92441 0.95995 0.85665 1.21443 1.00935 0.95835 0.94369 1.20716 0.93114 0.98972 0.95200 1.19928 1.00778 1.00484 0.99594 1.18162 0.76992 0.75736 0.82687 1.93206 1.85607 1.87602 1.49726 1.93169 1.34281 1.91919 1.96479 1.93179 1.95687 1.30747 1.96656 1.20872 0.99422 0.93243 0.94836 1.21563 0.96700 1.01970 0.96971 1.18770 0.92671 0.92062 0.86402 1.85024 1.51297 1.64088 1.28771 0.93500 0.91331 0.93274 0.92188 0.91559 0.93647 0.95012 0.95021 0.93661 0.93927 0.90052 0.94661 0.84983 0.82526 0.82972 0.75498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.62 9.91 71.98 0.71 -2.90 16 2 C -0.12 -3.36 5.93 30.59 0.18 -3.18 16 3 C -0.12 -4.34 5.51 30.59 0.17 -4.17 16 4 C 0.15 6.01 5.72 86.38 0.49 6.51 16 5 N -0.59 -27.65 2.41 -706.35 -1.70 -29.35 16 6 C -0.23 -12.21 8.15 84.03 0.69 -11.52 16 7 H 0.03 1.77 7.90 -2.91 -0.02 1.75 16 8 C 0.00 0.06 3.94 84.86 0.33 0.39 16 9 N -0.92 -49.52 11.44 21.65 0.25 -49.28 16 10 Si 0.95 43.50 28.80 68.60 1.98 45.48 16 11 H -0.29 -13.54 7.11 99.48 0.71 -12.84 16 12 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 13 H -0.31 -14.39 7.11 99.48 0.71 -13.68 16 14 C 0.19 8.18 5.15 85.63 0.44 8.62 16 15 C -0.12 -4.54 5.27 -19.77 -0.10 -4.65 16 16 C -0.06 -1.96 8.38 22.25 0.19 -1.77 16 17 C -0.21 -5.83 5.45 -19.85 -0.11 -5.94 16 18 C 0.52 13.39 3.36 71.23 0.24 13.63 16 19 F -0.18 -4.61 17.30 44.97 0.78 -3.83 16 20 F -0.18 -4.34 16.47 44.97 0.74 -3.60 16 21 F -0.18 -4.90 16.46 44.97 0.74 -4.16 16 22 C -0.07 -1.68 9.39 22.25 0.21 -1.48 16 23 C -0.15 -4.38 9.99 22.37 0.22 -4.16 16 24 C 0.15 5.23 6.66 22.51 0.15 5.38 16 25 O -0.48 -18.61 9.51 -92.47 -0.88 -19.49 16 26 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 27 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 28 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 29 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 30 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 31 H 0.04 1.69 7.28 -2.39 -0.02 1.67 16 32 H 0.03 1.28 8.14 -2.38 -0.02 1.26 16 33 H 0.03 1.37 8.08 -2.39 -0.02 1.35 16 34 H 0.05 1.74 7.83 -2.39 -0.02 1.72 16 35 H 0.25 13.12 8.31 -92.71 -0.77 12.35 16 36 H 0.08 4.00 5.42 -2.38 -0.01 3.98 16 37 H 0.03 1.47 7.67 -2.39 -0.02 1.45 16 38 H 0.13 4.01 7.54 -2.91 -0.02 3.99 16 39 H 0.16 3.10 7.61 -2.91 -0.02 3.07 16 40 H 0.15 3.59 8.06 -2.91 -0.02 3.56 16 41 H 0.39 12.79 9.06 -74.06 -0.67 12.12 16 Total: -1.00 -57.83 350.12 6.10 -51.73 By element: Atomic # 1 Polarization: 17.37 SS G_CDS: 0.39 Total: 17.75 kcal Atomic # 6 Polarization: -9.05 SS G_CDS: 3.81 Total: -5.24 kcal Atomic # 7 Polarization: -77.18 SS G_CDS: -1.45 Total: -78.63 kcal Atomic # 8 Polarization: -18.61 SS G_CDS: -0.88 Total: -19.49 kcal Atomic # 9 Polarization: -13.86 SS G_CDS: 2.26 Total: -11.60 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 1.98 Total: 45.48 kcal Total: -57.83 6.10 -51.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237141686.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.615 kcal (2) G-P(sol) polarization free energy of solvation -57.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds