Wall clock time and date at job start Tue Mar 31 2020 11:00:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.36001 * 117.00304 * 2 1 4 4 C 1.38633 * 119.95390 * 359.72951 * 3 2 1 5 5 C 1.38042 * 120.11814 * 179.72628 * 4 3 2 6 6 C 1.50708 * 119.98358 * 180.29632 * 5 4 3 7 7 C 1.50696 * 109.46948 * 265.25044 * 6 5 4 8 8 H 1.08000 * 120.00062 * 359.97438 * 7 6 5 9 9 C 1.37876 * 120.00051 * 180.02562 * 7 6 5 10 10 N 1.31512 * 119.99800 * 359.97438 * 9 7 6 11 11 Si 1.86797 * 120.00335 * 180.02562 * 9 7 6 12 12 H 1.48503 * 109.47467 * 59.99035 * 11 9 7 13 13 H 1.48495 * 109.47546 * 179.97438 * 11 9 7 14 14 H 1.48504 * 109.46916 * 299.99396 * 11 9 7 15 15 C 1.39311 * 120.02735 * 0.54736 * 5 4 3 16 16 C 1.48475 * 120.04358 * 179.75159 * 15 5 4 17 17 C 1.42308 * 128.15937 * 89.65555 * 16 15 5 18 18 C 1.50705 * 126.85617 * 359.97438 * 17 16 15 19 19 N 1.30025 * 106.28353 * 179.86649 * 17 16 15 20 20 O 1.20845 * 111.94816 * 0.42259 * 19 17 16 21 21 C 1.34041 * 111.83380 * 359.71971 * 20 19 17 22 22 C 1.50697 * 126.87885 * 180.02562 * 21 20 19 23 23 C 1.39298 * 119.90799 * 359.72560 * 15 5 4 24 24 C 1.38371 * 119.88220 * 359.97438 * 23 15 5 25 25 O 1.36001 * 120.01299 * 179.97438 * 24 23 15 26 26 C 1.42895 * 116.99952 * 0.02717 * 25 24 23 27 27 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46938 * 59.99841 * 1 2 3 29 29 H 1.09004 * 109.46926 * 299.99962 * 1 2 3 30 30 H 1.08004 * 119.93603 * 359.97438 * 4 3 2 31 31 H 1.08995 * 109.47290 * 25.25244 * 6 5 4 32 32 H 1.09002 * 109.46687 * 145.25049 * 6 5 4 33 33 H 0.97002 * 120.00140 * 180.02562 * 10 9 7 34 34 H 1.09001 * 109.47380 * 90.00687 * 18 17 16 35 35 H 1.08999 * 109.46749 * 210.00014 * 18 17 16 36 36 H 1.08997 * 109.47121 * 330.00060 * 18 17 16 37 37 H 1.08999 * 109.46980 * 270.00373 * 22 21 20 38 38 H 1.09005 * 109.46967 * 30.00061 * 22 21 20 39 39 H 1.08999 * 109.47314 * 149.99967 * 22 21 20 40 40 H 1.08009 * 120.05748 * 179.97438 * 23 15 5 41 41 H 1.08998 * 109.47480 * 59.99577 * 26 25 24 42 42 H 1.09004 * 109.46995 * 179.97438 * 26 25 24 43 43 H 1.09004 * 109.47129 * 299.99547 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2117 0.0000 4 6 1.2906 2.3739 -0.0057 5 6 1.9138 3.6056 0.0000 6 6 1.0891 4.8670 0.0006 7 6 0.9177 5.3557 -1.4146 8 1 1.3620 4.8080 -2.2326 9 6 0.1947 6.5026 -1.6651 10 7 -0.3458 7.1698 -0.6690 11 14 -0.0183 7.1081 -3.4193 12 1 -0.7081 6.0666 -4.2222 13 1 -0.8308 8.3510 -3.4188 14 1 1.3145 7.3878 -4.0117 15 6 3.3048 3.6831 -0.0001 16 6 3.9754 5.0078 0.0005 17 6 4.3667 5.7947 1.1198 18 6 4.1825 5.4506 2.5754 19 7 4.9169 6.8688 0.6358 20 8 4.9182 6.8704 -0.5727 21 6 4.3570 5.7608 -1.0733 22 6 4.1824 5.4134 -2.5292 23 6 4.0654 2.5162 -0.0001 24 6 3.4368 1.2835 0.0005 25 8 4.1769 0.1425 -0.0001 26 6 5.5981 0.2910 -0.0006 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 0.5139 0.8900 30 1 0.2122 2.3153 -0.0105 31 1 0.1108 4.6612 0.4349 32 1 1.5949 5.6315 0.5903 33 1 -0.8548 7.9766 -0.8452 34 1 5.0548 4.9033 2.9326 35 1 4.0671 6.3674 3.1536 36 1 3.2924 4.8325 2.6928 37 1 3.2234 5.7938 -2.8810 38 1 4.9873 5.8648 -3.1095 39 1 4.2103 4.3305 -2.6503 40 1 5.1440 2.5735 -0.0005 41 1 5.9065 0.8397 0.8893 42 1 6.0663 -0.6933 -0.0006 43 1 5.9057 0.8400 -0.8907 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242106414.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:00:57 Heat of formation + Delta-G solvation = -0.274807 kcal Electronic energy + Delta-G solvation = -27528.679733 eV Core-core repulsion = 23735.915002 eV Total energy + Delta-G solvation = -3792.764731 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -44.24316 -40.17616 -38.13898 -37.17348 -34.16530 -33.22760 -32.86143 -30.88379 -29.87145 -28.20423 -27.93242 -27.27733 -27.02448 -25.90719 -23.50890 -22.51173 -21.12944 -20.31644 -19.51513 -17.97736 -17.10224 -16.86026 -16.35859 -16.26435 -15.98786 -15.75855 -15.01373 -14.66929 -14.44465 -14.15043 -13.77081 -13.46340 -13.15647 -13.00208 -12.85222 -12.59382 -12.49081 -12.29038 -12.14669 -12.03539 -11.87511 -11.70399 -11.28874 -11.20002 -10.98550 -10.95041 -10.75655 -10.63695 -10.47703 -10.24126 -9.65700 -9.40008 -9.25446 -8.48154 -8.44298 -8.16217 -7.22577 -6.08115 -4.11820 1.68329 1.94418 2.09387 2.77037 3.25022 3.31702 3.32070 3.53551 3.56732 3.68703 4.11371 4.39751 4.70596 5.02595 5.09440 5.20091 5.25433 5.27122 5.30699 5.33437 5.40816 5.54350 5.62390 5.65068 5.70656 5.76536 5.78228 5.83753 5.86743 5.97351 6.03633 6.10607 6.13290 6.32329 6.47790 6.53197 6.72351 6.86394 6.99132 7.16690 7.33048 7.48897 7.73568 7.85908 7.92100 8.25933 8.86974 8.91224 9.50776 11.01677 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.010221 B = 0.006195 C = 0.004657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2738.714756 B = 4518.785079 C = 6011.025456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.313 6.313 3 C 0.103 3.897 4 C -0.176 4.176 5 C -0.009 4.009 6 C 0.054 3.946 7 C -0.505 4.505 8 H 0.058 0.942 9 C 0.062 3.938 10 N -0.891 5.891 11 Si 0.886 3.114 12 H -0.276 1.276 13 H -0.287 1.287 14 H -0.274 1.274 15 C -0.021 4.021 16 C -0.137 4.137 17 C 0.033 3.967 18 C -0.070 4.070 19 N -0.377 5.377 20 O 0.088 5.912 21 C 0.002 3.998 22 C -0.072 4.072 23 C -0.152 4.152 24 C 0.068 3.932 25 O -0.312 6.312 26 C 0.030 3.970 27 H 0.093 0.907 28 H 0.056 0.944 29 H 0.054 0.946 30 H 0.135 0.865 31 H 0.025 0.975 32 H 0.031 0.969 33 H 0.262 0.738 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.080 0.920 37 H 0.101 0.899 38 H 0.071 0.929 39 H 0.085 0.915 40 H 0.127 0.873 41 H 0.050 0.950 42 H 0.093 0.907 43 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.257 -10.709 1.317 13.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.227 6.227 3 C 0.058 3.942 4 C -0.194 4.194 5 C -0.009 4.009 6 C 0.017 3.983 7 C -0.544 4.544 8 H 0.076 0.924 9 C -0.140 4.140 10 N -0.529 5.529 11 Si 0.713 3.287 12 H -0.201 1.201 13 H -0.212 1.212 14 H -0.199 1.199 15 C -0.022 4.022 16 C -0.141 4.141 17 C -0.126 4.126 18 C -0.127 4.127 19 N -0.085 5.085 20 O 0.026 5.974 21 C -0.061 4.061 22 C -0.129 4.129 23 C -0.171 4.171 24 C 0.024 3.976 25 O -0.226 6.226 26 C -0.066 4.066 27 H 0.112 0.888 28 H 0.075 0.925 29 H 0.072 0.928 30 H 0.153 0.847 31 H 0.044 0.956 32 H 0.049 0.951 33 H 0.072 0.928 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.099 0.901 37 H 0.120 0.880 38 H 0.090 0.910 39 H 0.104 0.896 40 H 0.145 0.855 41 H 0.069 0.931 42 H 0.112 0.888 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 8.719 -9.843 1.896 13.285 hybrid contribution -0.712 0.136 -1.088 1.307 sum 8.007 -9.706 0.808 12.608 Atomic orbital electron populations 1.23015 0.78948 1.03195 1.01661 1.86092 1.20757 1.26483 1.89350 1.18308 0.88907 0.84960 1.02045 1.20972 0.99991 0.90608 1.07879 1.20513 0.92567 0.96421 0.91395 1.18296 0.93668 0.88226 0.98077 1.20885 1.33047 1.08925 0.91506 0.92420 1.24955 0.95640 0.96599 0.96797 1.69929 1.34653 1.17541 1.30793 0.86757 0.78475 0.78330 0.85137 1.20125 1.21231 1.19911 1.17267 0.91753 0.88627 1.04542 1.19167 1.06215 0.97662 0.91083 1.23422 0.99616 0.91232 0.98301 1.20080 1.02710 1.02246 0.87714 1.73583 1.22219 1.21474 0.91218 1.84676 1.60574 1.36706 1.15427 1.24329 0.97702 0.86282 0.97831 1.20369 1.04141 1.02514 0.85863 1.20910 0.99409 0.90355 1.06441 1.17850 0.87964 0.85450 1.06347 1.86116 1.17985 1.28494 1.90051 1.22945 0.79593 1.03063 1.00994 0.88811 0.92530 0.92758 0.84732 0.95626 0.95058 0.92796 0.90921 0.90885 0.90077 0.88018 0.91025 0.89645 0.85541 0.93144 0.88840 0.93090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 9.81 101.05 0.99 1.33 16 2 O -0.31 -5.15 10.27 -34.41 -0.35 -5.51 16 3 C 0.10 1.83 6.70 -39.07 -0.26 1.56 16 4 C -0.18 -3.29 8.65 -39.51 -0.34 -3.63 16 5 C -0.01 -0.18 5.10 -104.29 -0.53 -0.71 16 6 C 0.05 1.32 4.62 -29.03 -0.13 1.19 16 7 C -0.51 -13.06 8.69 -34.44 -0.30 -13.36 16 8 H 0.06 1.45 7.11 -52.49 -0.37 1.08 16 9 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 10 N -0.89 -25.60 13.29 55.43 0.74 -24.87 16 11 Si 0.89 20.57 29.54 -169.99 -5.02 15.55 16 12 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 13 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 14 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 15 C -0.02 -0.39 5.53 -104.88 -0.58 -0.97 16 16 C -0.14 -2.65 4.29 -104.71 -0.45 -3.10 16 17 C 0.03 0.64 7.24 -81.79 -0.59 0.05 16 18 C -0.07 -1.09 10.40 36.01 0.37 -0.71 16 19 N -0.38 -7.59 12.04 33.67 0.41 -7.19 16 20 O 0.09 1.75 11.18 17.19 0.19 1.94 16 21 C 0.00 0.03 7.54 -34.91 -0.26 -0.23 16 22 C -0.07 -1.15 10.31 36.00 0.37 -0.78 16 23 C -0.15 -2.52 8.76 -39.14 -0.34 -2.86 16 24 C 0.07 1.16 6.69 -39.17 -0.26 0.90 16 25 O -0.31 -4.89 10.27 -34.41 -0.35 -5.24 16 26 C 0.03 0.32 9.81 101.05 0.99 1.31 16 27 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.06 0.69 7.64 -51.93 -0.40 0.29 16 29 H 0.05 0.63 7.67 -51.93 -0.40 0.24 16 30 H 0.13 2.37 6.28 -52.48 -0.33 2.04 16 31 H 0.03 0.66 8.05 -51.93 -0.42 0.24 16 32 H 0.03 0.84 7.15 -51.93 -0.37 0.47 16 33 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 34 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 37 H 0.10 1.85 7.08 -51.93 -0.37 1.48 16 38 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.08 1.26 8.08 -51.93 -0.42 0.84 16 40 H 0.13 1.80 6.29 -52.48 -0.33 1.47 16 41 H 0.05 0.51 7.66 -51.93 -0.40 0.11 16 42 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.05 0.51 7.66 -51.93 -0.40 0.12 16 LS Contribution 365.36 15.07 5.51 5.51 Total: -1.00 -31.38 365.36 -6.19 -37.57 By element: Atomic # 1 Polarization: 6.55 SS G_CDS: -5.87 Total: 0.68 kcal Atomic # 6 Polarization: -17.01 SS G_CDS: -1.43 Total: -18.44 kcal Atomic # 7 Polarization: -33.20 SS G_CDS: 1.14 Total: -32.05 kcal Atomic # 8 Polarization: -8.29 SS G_CDS: -0.51 Total: -8.81 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -31.38 -6.19 -37.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242106414.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.294 kcal (2) G-P(sol) polarization free energy of solvation -31.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds