Wall clock time and date at job start Tue Mar 31 2020 11:00:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.36001 * 117.00304 * 2 1 4 4 C 1.38633 * 119.95390 * 359.72951 * 3 2 1 5 5 C 1.38042 * 120.11814 * 179.72628 * 4 3 2 6 6 C 1.50708 * 119.98358 * 180.29632 * 5 4 3 7 7 C 1.50696 * 109.46948 * 265.25044 * 6 5 4 8 8 H 1.08000 * 120.00062 * 359.97438 * 7 6 5 9 9 C 1.37876 * 120.00051 * 180.02562 * 7 6 5 10 10 N 1.31512 * 119.99800 * 359.97438 * 9 7 6 11 11 Si 1.86797 * 120.00335 * 180.02562 * 9 7 6 12 12 H 1.48503 * 109.47467 * 59.99035 * 11 9 7 13 13 H 1.48495 * 109.47546 * 179.97438 * 11 9 7 14 14 H 1.48504 * 109.46916 * 299.99396 * 11 9 7 15 15 C 1.39311 * 120.02735 * 0.54736 * 5 4 3 16 16 C 1.48475 * 120.04358 * 179.75159 * 15 5 4 17 17 C 1.42308 * 128.15937 * 89.65555 * 16 15 5 18 18 C 1.50705 * 126.85617 * 359.97438 * 17 16 15 19 19 N 1.30025 * 106.28353 * 179.86649 * 17 16 15 20 20 O 1.20845 * 111.94816 * 0.42259 * 19 17 16 21 21 C 1.34041 * 111.83380 * 359.71971 * 20 19 17 22 22 C 1.50697 * 126.87885 * 180.02562 * 21 20 19 23 23 C 1.39298 * 119.90799 * 359.72560 * 15 5 4 24 24 C 1.38371 * 119.88220 * 359.97438 * 23 15 5 25 25 O 1.36001 * 120.01299 * 179.97438 * 24 23 15 26 26 C 1.42895 * 116.99952 * 0.02717 * 25 24 23 27 27 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46938 * 59.99841 * 1 2 3 29 29 H 1.09004 * 109.46926 * 299.99962 * 1 2 3 30 30 H 1.08004 * 119.93603 * 359.97438 * 4 3 2 31 31 H 1.08995 * 109.47290 * 25.25244 * 6 5 4 32 32 H 1.09002 * 109.46687 * 145.25049 * 6 5 4 33 33 H 0.97002 * 120.00140 * 180.02562 * 10 9 7 34 34 H 1.09001 * 109.47380 * 90.00687 * 18 17 16 35 35 H 1.08999 * 109.46749 * 210.00014 * 18 17 16 36 36 H 1.08997 * 109.47121 * 330.00060 * 18 17 16 37 37 H 1.08999 * 109.46980 * 270.00373 * 22 21 20 38 38 H 1.09005 * 109.46967 * 30.00061 * 22 21 20 39 39 H 1.08999 * 109.47314 * 149.99967 * 22 21 20 40 40 H 1.08009 * 120.05748 * 179.97438 * 23 15 5 41 41 H 1.08998 * 109.47480 * 59.99577 * 26 25 24 42 42 H 1.09004 * 109.46995 * 179.97438 * 26 25 24 43 43 H 1.09004 * 109.47129 * 299.99547 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2117 0.0000 4 6 1.2906 2.3739 -0.0057 5 6 1.9138 3.6056 0.0000 6 6 1.0891 4.8670 0.0006 7 6 0.9177 5.3557 -1.4146 8 1 1.3620 4.8080 -2.2326 9 6 0.1947 6.5026 -1.6651 10 7 -0.3458 7.1698 -0.6690 11 14 -0.0183 7.1081 -3.4193 12 1 -0.7081 6.0666 -4.2222 13 1 -0.8308 8.3510 -3.4188 14 1 1.3145 7.3878 -4.0117 15 6 3.3048 3.6831 -0.0001 16 6 3.9754 5.0078 0.0005 17 6 4.3667 5.7947 1.1198 18 6 4.1825 5.4506 2.5754 19 7 4.9169 6.8688 0.6358 20 8 4.9182 6.8704 -0.5727 21 6 4.3570 5.7608 -1.0733 22 6 4.1824 5.4134 -2.5292 23 6 4.0654 2.5162 -0.0001 24 6 3.4368 1.2835 0.0005 25 8 4.1769 0.1425 -0.0001 26 6 5.5981 0.2910 -0.0006 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 0.5139 0.8900 30 1 0.2122 2.3153 -0.0105 31 1 0.1108 4.6612 0.4349 32 1 1.5949 5.6315 0.5903 33 1 -0.8548 7.9766 -0.8452 34 1 5.0548 4.9033 2.9326 35 1 4.0671 6.3674 3.1536 36 1 3.2924 4.8325 2.6928 37 1 3.2234 5.7938 -2.8810 38 1 4.9873 5.8648 -3.1095 39 1 4.2103 4.3305 -2.6503 40 1 5.1440 2.5735 -0.0005 41 1 5.9065 0.8397 0.8893 42 1 6.0663 -0.6933 -0.0006 43 1 5.9057 0.8400 -0.8907 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242106414.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:00:56 Heat of formation + Delta-G solvation = -17.513442 kcal Electronic energy + Delta-G solvation = -27529.427256 eV Core-core repulsion = 23735.915002 eV Total energy + Delta-G solvation = -3793.512254 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -45.71972 -41.48566 -39.32271 -38.56636 -35.59574 -35.14084 -34.27974 -32.53784 -31.19604 -29.54011 -29.35796 -28.66378 -28.00287 -27.36091 -25.25171 -23.98176 -22.55128 -21.76880 -20.91941 -19.24593 -18.58606 -18.46073 -18.17670 -17.57640 -17.35422 -16.93110 -16.53450 -16.07219 -15.71999 -15.34562 -15.16507 -14.89073 -14.49965 -14.42369 -14.24665 -14.22969 -13.85302 -13.59615 -13.44530 -13.33824 -13.25301 -13.09860 -12.89025 -12.66020 -12.45728 -12.28781 -12.22072 -12.02049 -12.00121 -11.75355 -11.45954 -11.16878 -10.72731 -10.54016 -9.93173 -9.56897 -8.63406 -8.12679 -6.24500 0.29966 0.50527 0.62018 1.30878 1.41194 1.42053 1.49010 2.25793 2.39114 2.41275 2.43707 2.72901 3.18579 3.31979 3.66459 3.83987 3.94908 4.11808 4.30845 4.35392 4.37988 4.43468 4.45469 4.47310 4.48154 4.55584 4.63836 4.70306 4.71983 4.74980 4.77070 4.77889 4.79510 4.98189 5.12776 5.19959 5.23952 5.34590 5.39271 5.42773 5.71565 5.78956 5.97923 6.16087 6.23060 6.66972 6.86374 7.39219 7.42380 8.95047 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.010221 B = 0.006195 C = 0.004657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2738.714756 B = 4518.785079 C = 6011.025456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.322 6.322 3 C 0.099 3.901 4 C -0.177 4.177 5 C -0.035 4.035 6 C 0.069 3.931 7 C -0.501 4.501 8 H 0.064 0.936 9 C 0.009 3.991 10 N -0.933 5.933 11 Si 0.943 3.057 12 H -0.266 1.266 13 H -0.292 1.292 14 H -0.257 1.257 15 C -0.021 4.021 16 C -0.153 4.153 17 C 0.025 3.975 18 C -0.069 4.069 19 N -0.398 5.398 20 O 0.077 5.923 21 C -0.005 4.005 22 C -0.070 4.070 23 C -0.141 4.141 24 C 0.077 3.923 25 O -0.325 6.325 26 C 0.018 3.982 27 H 0.126 0.874 28 H 0.055 0.945 29 H 0.057 0.943 30 H 0.136 0.864 31 H -0.002 1.002 32 H -0.001 1.001 33 H 0.260 0.740 34 H 0.103 0.897 35 H 0.077 0.923 36 H 0.074 0.926 37 H 0.080 0.920 38 H 0.105 0.895 39 H 0.099 0.901 40 H 0.153 0.847 41 H 0.061 0.939 42 H 0.121 0.879 43 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.867 -12.749 0.266 16.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.237 6.237 3 C 0.054 3.946 4 C -0.196 4.196 5 C -0.035 4.035 6 C 0.033 3.967 7 C -0.539 4.539 8 H 0.082 0.918 9 C -0.189 4.189 10 N -0.573 5.573 11 Si 0.768 3.232 12 H -0.190 1.190 13 H -0.218 1.218 14 H -0.182 1.182 15 C -0.022 4.022 16 C -0.157 4.157 17 C -0.134 4.134 18 C -0.127 4.127 19 N -0.108 5.108 20 O 0.017 5.983 21 C -0.068 4.068 22 C -0.127 4.127 23 C -0.160 4.160 24 C 0.032 3.968 25 O -0.240 6.240 26 C -0.076 4.076 27 H 0.144 0.856 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.154 0.846 31 H 0.016 0.984 32 H 0.017 0.983 33 H 0.069 0.931 34 H 0.121 0.879 35 H 0.096 0.904 36 H 0.093 0.907 37 H 0.098 0.902 38 H 0.123 0.877 39 H 0.117 0.883 40 H 0.171 0.829 41 H 0.079 0.921 42 H 0.139 0.861 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 10.345 -11.908 0.823 15.796 hybrid contribution -1.176 0.621 -0.703 1.504 sum 9.169 -11.287 0.120 14.543 Atomic orbital electron populations 1.23303 0.76990 1.05412 1.01806 1.86085 1.22790 1.25690 1.89090 1.18370 0.89534 0.84997 1.01731 1.20904 1.00258 0.90464 1.07984 1.20151 0.93191 0.95276 0.94917 1.17949 0.92548 0.89439 0.96805 1.21187 1.31870 1.08516 0.92359 0.91770 1.25773 0.95562 0.96995 1.00590 1.70080 1.36072 1.18130 1.33054 0.85816 0.79062 0.77632 0.80656 1.19041 1.21810 1.18185 1.17230 0.91008 0.89262 1.04655 1.19395 1.06614 0.98274 0.91442 1.23996 0.98740 0.90794 0.99860 1.20197 1.03772 1.02755 0.85932 1.73561 1.23542 1.22179 0.91520 1.84637 1.61027 1.37187 1.15451 1.24885 0.97045 0.85774 0.99083 1.20466 1.04141 1.03586 0.84471 1.21039 1.00486 0.89201 1.05271 1.17975 0.88064 0.86116 1.04658 1.86115 1.20418 1.27826 1.89599 1.23323 0.76993 1.05323 1.02011 0.85595 0.92635 0.92385 0.84616 0.98370 0.98327 0.93135 0.87869 0.90446 0.90674 0.90172 0.87677 0.88277 0.82903 0.92058 0.86096 0.92024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.45 9.81 113.37 1.11 1.56 16 2 O -0.32 -10.06 10.27 -79.55 -0.82 -10.88 16 3 C 0.10 3.39 6.70 22.60 0.15 3.54 16 4 C -0.18 -6.63 8.65 22.32 0.19 -6.43 16 5 C -0.03 -1.46 5.10 -19.65 -0.10 -1.56 16 6 C 0.07 3.54 4.62 29.10 0.13 3.67 16 7 C -0.50 -26.41 8.69 25.60 0.22 -26.19 16 8 H 0.06 3.23 7.11 -2.91 -0.02 3.21 16 9 C 0.01 0.47 5.46 84.65 0.46 0.93 16 10 N -0.93 -55.50 13.29 21.45 0.28 -55.22 16 11 Si 0.94 42.36 29.54 68.60 2.03 44.38 16 12 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 13 H -0.29 -13.29 7.11 99.48 0.71 -12.59 16 14 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 15 C -0.02 -0.76 5.53 -20.03 -0.11 -0.87 16 16 C -0.15 -5.89 4.29 -19.92 -0.09 -5.97 16 17 C 0.03 0.96 7.24 43.84 0.32 1.28 16 18 C -0.07 -2.12 10.40 71.24 0.74 -1.38 16 19 N -0.40 -16.12 12.04 -48.53 -0.58 -16.71 16 20 O 0.08 3.05 11.18 71.72 0.80 3.85 16 21 C 0.00 -0.17 7.54 25.30 0.19 0.02 16 22 C -0.07 -2.13 10.31 71.23 0.73 -1.39 16 23 C -0.14 -4.36 8.76 22.56 0.20 -4.16 16 24 C 0.08 2.45 6.69 22.54 0.15 2.60 16 25 O -0.32 -9.20 10.27 -79.54 -0.82 -10.01 16 26 C 0.02 0.32 9.81 113.37 1.11 1.43 16 27 H 0.13 2.07 8.14 -2.39 -0.02 2.05 16 28 H 0.05 1.30 7.64 -2.39 -0.02 1.28 16 29 H 0.06 1.30 7.67 -2.38 -0.02 1.28 16 30 H 0.14 4.88 6.28 -2.91 -0.02 4.86 16 31 H 0.00 -0.11 8.05 -2.39 -0.02 -0.13 16 32 H 0.00 -0.08 7.15 -2.39 -0.02 -0.10 16 33 H 0.26 14.83 8.31 -92.71 -0.77 14.06 16 34 H 0.10 2.48 8.14 -2.39 -0.02 2.46 16 35 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 36 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 37 H 0.08 2.84 7.08 -2.39 -0.02 2.83 16 38 H 0.10 2.45 8.14 -2.38 -0.02 2.43 16 39 H 0.10 2.72 8.08 -2.39 -0.02 2.70 16 40 H 0.15 3.84 6.29 -2.91 -0.02 3.82 16 41 H 0.06 0.99 7.66 -2.39 -0.02 0.97 16 42 H 0.12 1.52 8.14 -2.39 -0.02 1.50 16 43 H 0.06 1.00 7.66 -2.38 -0.02 0.98 16 Total: -1.00 -69.44 365.36 7.35 -62.09 By element: Atomic # 1 Polarization: 14.39 SS G_CDS: 1.03 Total: 15.42 kcal Atomic # 6 Polarization: -38.35 SS G_CDS: 5.42 Total: -32.93 kcal Atomic # 7 Polarization: -71.62 SS G_CDS: -0.30 Total: -71.92 kcal Atomic # 8 Polarization: -16.21 SS G_CDS: -0.83 Total: -17.04 kcal Atomic # 14 Polarization: 42.36 SS G_CDS: 2.03 Total: 44.38 kcal Total: -69.44 7.35 -62.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242106414.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.575 kcal (2) G-P(sol) polarization free energy of solvation -69.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds