Wall clock time and date at job start Tue Mar 31 2020 12:20:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53006 * 109.47122 * 2 1 4 4 C 1.53004 * 109.46975 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.46802 * 179.97438 * 4 3 2 6 6 C 1.46505 * 119.99870 * 270.00020 * 5 4 3 7 7 C 1.50704 * 109.46882 * 270.00090 * 6 5 4 8 8 H 1.07998 * 119.99889 * 359.97438 * 7 6 5 9 9 C 1.37875 * 119.99613 * 180.02562 * 7 6 5 10 10 N 1.31519 * 120.00206 * 0.02562 * 9 7 6 11 11 Si 1.86798 * 119.99825 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.47423 * 0.02562 * 11 9 7 13 13 H 1.48508 * 109.46967 * 120.00386 * 11 9 7 14 14 H 1.48500 * 109.47348 * 239.99985 * 11 9 7 15 15 C 1.34775 * 119.99864 * 89.99926 * 5 4 3 16 16 S 1.71189 * 120.00162 * 0.02562 * 15 5 4 17 17 N 1.34776 * 119.99741 * 179.97438 * 15 5 4 18 18 C 1.39476 * 120.00000 * 184.13361 * 17 15 5 19 19 C 1.39130 * 119.92260 * 134.52413 * 18 17 15 20 20 C 1.37677 * 120.07870 * 180.02562 * 19 18 17 21 21 C 1.39788 * 119.92339 * 359.97438 * 20 19 18 22 22 C 1.43195 * 120.07892 * 179.97438 * 21 20 19 23 23 N 9.79338 * 119.71445 * 235.20848 * 4 1 2 24 24 C 1.39786 * 119.84067 * 0.25228 * 21 20 19 25 25 C 1.37688 * 119.91772 * 359.50928 * 24 21 20 26 26 H 1.08997 * 109.47279 * 59.99825 * 1 2 3 27 27 H 1.08999 * 109.47099 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.47151 * 299.99750 * 1 2 3 29 29 H 1.09005 * 109.47151 * 240.00250 * 2 1 3 30 30 H 1.08997 * 109.47279 * 120.00175 * 2 1 3 31 31 H 1.08996 * 109.46787 * 59.99822 * 3 2 1 32 32 H 1.09003 * 109.46806 * 300.00023 * 3 2 1 33 33 H 1.09000 * 109.46825 * 60.00464 * 4 3 2 34 34 H 1.08997 * 109.47338 * 300.00121 * 4 3 2 35 35 H 1.09001 * 109.47078 * 29.99951 * 6 5 4 36 36 H 1.09001 * 109.47134 * 150.00342 * 6 5 4 37 37 H 0.96995 * 119.99984 * 179.97438 * 10 9 7 38 38 H 0.97001 * 120.00217 * 4.13226 * 17 15 5 39 39 H 1.07996 * 119.95726 * 0.02562 * 19 18 17 40 40 H 1.07997 * 120.03933 * 179.97438 * 20 19 18 41 41 H 1.08003 * 120.03945 * 179.74861 * 24 21 20 42 42 H 1.07996 * 119.95593 * 180.21014 * 25 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0583 2.8237 -0.0013 6 6 4.3019 3.5140 -1.2704 7 6 5.7250 3.2770 -1.7059 8 1 6.3824 2.6731 -1.0980 9 6 6.1881 3.8321 -2.8800 10 7 5.3880 4.5688 -3.6195 11 14 7.9523 3.5391 -3.4195 12 1 8.6401 2.6832 -2.4197 13 1 7.9597 2.8602 -4.7403 14 1 8.6595 4.8403 -3.5279 15 6 4.2834 3.4594 1.1657 16 16 3.9993 2.6526 2.6486 17 7 4.7331 4.7299 1.1651 18 6 5.0481 5.3588 2.3695 19 6 6.2287 6.0858 2.4848 20 6 6.5431 6.7074 3.6724 21 6 5.6743 6.6078 4.7629 22 6 5.9982 7.2525 5.9998 23 7 6.2526 7.7640 6.9816 24 6 4.4913 5.8725 4.6449 25 6 4.1810 5.2576 3.4527 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 1.6766 1.9563 0.8900 32 1 1.6766 1.9563 -0.8900 33 1 3.9329 0.9289 -0.8909 34 1 3.9337 0.9285 0.8891 35 1 3.6208 3.1296 -2.0296 36 1 4.1350 4.5833 -1.1403 37 1 5.7139 4.9596 -4.4452 38 1 4.8377 5.2070 0.3270 39 1 6.8992 6.1627 1.6417 40 1 7.4599 7.2713 3.7613 41 1 3.8197 5.7901 5.4867 42 1 3.2655 4.6923 3.3598 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245899230.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:20:07 Heat of formation + Delta-G solvation = 60.425994 kcal Electronic energy + Delta-G solvation = -23329.054057 eV Core-core repulsion = 20013.967132 eV Total energy + Delta-G solvation = -3315.086925 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 317.126 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.11974 -38.64450 -36.74814 -35.60714 -34.28622 -33.06015 -31.11570 -30.26276 -29.10462 -27.81580 -24.76314 -23.97008 -22.98193 -22.70679 -21.06572 -20.51493 -18.86449 -18.20863 -17.58725 -16.93027 -15.63707 -15.49711 -15.10476 -14.97430 -14.50531 -14.39562 -13.99909 -13.85909 -13.58920 -13.48825 -13.32843 -12.87165 -12.82262 -12.57025 -12.41487 -12.22062 -11.97476 -11.79540 -11.39948 -11.23403 -11.14802 -11.02397 -10.97595 -10.90559 -10.78807 -10.41668 -10.23644 -10.09854 -9.20881 -9.03732 -8.92780 -8.09635 -7.30372 -6.72741 -6.52860 -4.65429 0.69533 1.46830 1.90789 2.37874 2.67278 2.92385 3.02172 3.11972 3.12790 3.17240 3.71798 3.93512 3.96074 4.07502 4.80375 4.89912 4.92715 5.08057 5.12659 5.25507 5.31299 5.45221 5.51259 5.61751 5.79193 5.84277 5.92802 5.93466 5.99499 6.06645 6.13542 6.19405 6.28090 6.33955 6.37691 6.46426 6.55200 6.56814 6.67179 6.87736 7.04118 7.35294 7.46196 7.49347 7.55805 7.71722 8.43271 9.05730 10.52566 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.008740 B = 0.004644 C = 0.003195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3202.799002 B = 6028.031102 C = 8761.342802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.118 4.118 3 C -0.129 4.129 4 C 0.110 3.890 5 N -0.528 5.528 6 C 0.221 3.779 7 C -0.551 4.551 8 H 0.067 0.933 9 C 0.071 3.929 10 N -0.885 5.885 11 Si 0.903 3.097 12 H -0.270 1.270 13 H -0.279 1.279 14 H -0.279 1.279 15 C 0.570 3.430 16 S -0.688 6.688 17 N -0.637 5.637 18 C 0.177 3.823 19 C -0.129 4.129 20 C -0.065 4.065 21 C -0.045 4.045 22 C 0.266 3.734 23 N -0.436 5.436 24 C -0.065 4.065 25 C -0.075 4.075 26 H 0.051 0.949 27 H 0.051 0.949 28 H 0.053 0.947 29 H 0.060 0.940 30 H 0.066 0.934 31 H 0.073 0.927 32 H 0.059 0.941 33 H 0.086 0.914 34 H 0.105 0.895 35 H 0.055 0.945 36 H 0.036 0.964 37 H 0.270 0.730 38 H 0.420 0.580 39 H 0.137 0.863 40 H 0.133 0.867 41 H 0.133 0.867 42 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.565 -0.092 4.840 6.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.156 4.156 3 C -0.168 4.168 4 C -0.013 4.013 5 N -0.229 5.229 6 C 0.099 3.901 7 C -0.590 4.590 8 H 0.086 0.914 9 C -0.134 4.134 10 N -0.521 5.521 11 Si 0.729 3.271 12 H -0.194 1.194 13 H -0.205 1.205 14 H -0.205 1.205 15 C 0.209 3.791 16 S -0.556 6.556 17 N -0.266 5.266 18 C 0.081 3.919 19 C -0.150 4.150 20 C -0.087 4.087 21 C -0.049 4.049 22 C -0.049 4.049 23 N -0.111 5.111 24 C -0.088 4.088 25 C -0.098 4.098 26 H 0.070 0.930 27 H 0.070 0.930 28 H 0.072 0.928 29 H 0.079 0.921 30 H 0.084 0.916 31 H 0.092 0.908 32 H 0.078 0.922 33 H 0.104 0.896 34 H 0.123 0.877 35 H 0.073 0.927 36 H 0.053 0.947 37 H 0.080 0.920 38 H 0.263 0.737 39 H 0.154 0.846 40 H 0.150 0.850 41 H 0.150 0.850 42 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -4.396 0.155 6.927 8.205 hybrid contribution 1.172 0.302 -2.219 2.528 sum -3.223 0.457 4.708 5.724 Atomic orbital electron populations 1.21741 0.96029 1.01194 1.01721 1.21388 0.95649 0.96424 1.02118 1.21885 0.94925 0.97409 1.02620 1.21949 0.94157 0.80278 1.04903 1.47657 1.55879 1.14238 1.05106 1.19843 0.98614 0.92566 0.79039 1.21378 0.95627 1.34183 1.07796 0.91447 1.24949 0.98559 0.94179 0.95727 1.69911 1.35938 1.32035 1.14257 0.86345 0.83402 0.78436 0.78880 1.19407 1.20511 1.20516 1.22046 0.81090 0.84024 0.91970 1.93037 1.76821 1.69653 1.16042 1.42246 1.63836 1.11090 1.09446 1.17699 0.93485 0.94479 0.86226 1.20931 0.95113 1.00341 0.98656 1.20789 0.98459 0.98504 0.90947 1.16052 0.98111 1.02671 0.88054 1.25788 0.93230 0.93034 0.92865 1.81215 1.08513 1.10211 1.11190 1.20923 0.94996 0.94896 0.97991 1.21528 1.01132 0.95645 0.91515 0.92964 0.93029 0.92753 0.92105 0.91562 0.90837 0.92207 0.89573 0.87681 0.92725 0.94655 0.92028 0.73696 0.84552 0.84960 0.84953 0.82420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 9.91 37.15 0.37 -1.19 16 2 C -0.12 -1.37 5.93 -26.73 -0.16 -1.53 16 3 C -0.13 -1.80 5.54 -26.73 -0.15 -1.94 16 4 C 0.11 1.76 5.17 -4.04 -0.02 1.74 16 5 N -0.53 -9.43 2.46 -177.08 -0.43 -9.86 16 6 C 0.22 4.44 4.96 -5.19 -0.03 4.42 16 7 C -0.55 -12.58 9.39 -34.44 -0.32 -12.90 16 8 H 0.07 1.61 7.81 -52.49 -0.41 1.20 16 9 C 0.07 1.67 5.46 -17.82 -0.10 1.57 16 10 N -0.88 -21.73 13.29 55.43 0.74 -21.00 16 11 Si 0.90 18.73 29.54 -169.99 -5.02 13.71 16 12 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 13 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 14 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 15 C 0.57 10.12 7.55 -86.92 -0.66 9.47 16 16 S -0.69 -13.03 24.20 -107.50 -2.60 -15.63 16 17 N -0.64 -10.10 5.17 -11.39 -0.06 -10.16 16 18 C 0.18 2.51 5.93 -83.72 -0.50 2.01 16 19 C -0.13 -1.58 9.95 -39.46 -0.39 -1.97 16 20 C -0.07 -0.71 9.75 -39.21 -0.38 -1.09 16 21 C -0.04 -0.52 5.74 -106.82 -0.61 -1.13 16 22 C 0.27 3.35 15.33 -22.48 -0.34 3.01 16 23 N -0.44 -6.34 18.54 41.83 0.78 -5.56 16 24 C -0.07 -0.77 9.75 -39.20 -0.38 -1.15 16 25 C -0.08 -1.02 7.84 -39.45 -0.31 -1.33 16 26 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 30 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 31 H 0.07 1.11 8.12 -51.93 -0.42 0.69 16 32 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.09 1.37 8.07 -51.93 -0.42 0.95 16 34 H 0.11 1.77 6.58 -51.93 -0.34 1.43 16 35 H 0.05 1.17 8.07 -51.93 -0.42 0.75 16 36 H 0.04 0.72 6.31 -51.93 -0.33 0.39 16 37 H 0.27 6.35 8.31 -40.82 -0.34 6.01 16 38 H 0.42 6.64 6.52 -40.82 -0.27 6.37 16 39 H 0.14 1.55 8.06 -52.49 -0.42 1.12 16 40 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 41 H 0.13 1.32 8.06 -52.48 -0.42 0.89 16 42 H 0.16 2.35 6.10 -44.33 -0.27 2.08 16 LS Contribution 371.61 15.07 5.60 5.60 Total: -1.00 -26.24 371.61 -10.80 -37.04 By element: Atomic # 1 Polarization: 13.70 SS G_CDS: -5.82 Total: 7.88 kcal Atomic # 6 Polarization: 1.96 SS G_CDS: -3.98 Total: -2.02 kcal Atomic # 7 Polarization: -47.60 SS G_CDS: 1.02 Total: -46.59 kcal Atomic # 14 Polarization: 18.73 SS G_CDS: -5.02 Total: 13.71 kcal Atomic # 16 Polarization: -13.03 SS G_CDS: -2.60 Total: -15.63 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -26.24 -10.80 -37.04 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245899230.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.465 kcal (2) G-P(sol) polarization free energy of solvation -26.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.039 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds