Wall clock time and date at job start Tue Mar 31 2020 12:20:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53006 * 109.47122 * 2 1 4 4 C 1.53004 * 109.46975 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.46802 * 179.97438 * 4 3 2 6 6 C 1.46505 * 119.99870 * 270.00020 * 5 4 3 7 7 C 1.50704 * 109.46882 * 270.00090 * 6 5 4 8 8 H 1.07998 * 119.99889 * 359.97438 * 7 6 5 9 9 C 1.37875 * 119.99613 * 180.02562 * 7 6 5 10 10 N 1.31519 * 120.00206 * 0.02562 * 9 7 6 11 11 Si 1.86798 * 119.99825 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.47423 * 0.02562 * 11 9 7 13 13 H 1.48508 * 109.46967 * 120.00386 * 11 9 7 14 14 H 1.48500 * 109.47348 * 239.99985 * 11 9 7 15 15 C 1.34775 * 119.99864 * 89.99926 * 5 4 3 16 16 S 1.71189 * 120.00162 * 0.02562 * 15 5 4 17 17 N 1.34776 * 119.99741 * 179.97438 * 15 5 4 18 18 C 1.39476 * 120.00000 * 184.13361 * 17 15 5 19 19 C 1.39130 * 119.92260 * 134.52413 * 18 17 15 20 20 C 1.37677 * 120.07870 * 180.02562 * 19 18 17 21 21 C 1.39788 * 119.92339 * 359.97438 * 20 19 18 22 22 C 1.43195 * 120.07892 * 179.97438 * 21 20 19 23 23 N 9.79338 * 119.71445 * 235.20848 * 4 1 2 24 24 C 1.39786 * 119.84067 * 0.25228 * 21 20 19 25 25 C 1.37688 * 119.91772 * 359.50928 * 24 21 20 26 26 H 1.08997 * 109.47279 * 59.99825 * 1 2 3 27 27 H 1.08999 * 109.47099 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.47151 * 299.99750 * 1 2 3 29 29 H 1.09005 * 109.47151 * 240.00250 * 2 1 3 30 30 H 1.08997 * 109.47279 * 120.00175 * 2 1 3 31 31 H 1.08996 * 109.46787 * 59.99822 * 3 2 1 32 32 H 1.09003 * 109.46806 * 300.00023 * 3 2 1 33 33 H 1.09000 * 109.46825 * 60.00464 * 4 3 2 34 34 H 1.08997 * 109.47338 * 300.00121 * 4 3 2 35 35 H 1.09001 * 109.47078 * 29.99951 * 6 5 4 36 36 H 1.09001 * 109.47134 * 150.00342 * 6 5 4 37 37 H 0.96995 * 119.99984 * 179.97438 * 10 9 7 38 38 H 0.97001 * 120.00217 * 4.13226 * 17 15 5 39 39 H 1.07996 * 119.95726 * 0.02562 * 19 18 17 40 40 H 1.07997 * 120.03933 * 179.97438 * 20 19 18 41 41 H 1.08003 * 120.03945 * 179.74861 * 24 21 20 42 42 H 1.07996 * 119.95593 * 180.21014 * 25 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0583 2.8237 -0.0013 6 6 4.3019 3.5140 -1.2704 7 6 5.7250 3.2770 -1.7059 8 1 6.3824 2.6731 -1.0980 9 6 6.1881 3.8321 -2.8800 10 7 5.3880 4.5688 -3.6195 11 14 7.9523 3.5391 -3.4195 12 1 8.6401 2.6832 -2.4197 13 1 7.9597 2.8602 -4.7403 14 1 8.6595 4.8403 -3.5279 15 6 4.2834 3.4594 1.1657 16 16 3.9993 2.6526 2.6486 17 7 4.7331 4.7299 1.1651 18 6 5.0481 5.3588 2.3695 19 6 6.2287 6.0858 2.4848 20 6 6.5431 6.7074 3.6724 21 6 5.6743 6.6078 4.7629 22 6 5.9982 7.2525 5.9998 23 7 6.2526 7.7640 6.9816 24 6 4.4913 5.8725 4.6449 25 6 4.1810 5.2576 3.4527 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 1.6766 1.9563 0.8900 32 1 1.6766 1.9563 -0.8900 33 1 3.9329 0.9289 -0.8909 34 1 3.9337 0.9285 0.8891 35 1 3.6208 3.1296 -2.0296 36 1 4.1350 4.5833 -1.1403 37 1 5.7139 4.9596 -4.4452 38 1 4.8377 5.2070 0.3270 39 1 6.8992 6.1627 1.6417 40 1 7.4599 7.2713 3.7613 41 1 3.8197 5.7901 5.4867 42 1 3.2655 4.6923 3.3598 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245899230.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:20:06 Heat of formation + Delta-G solvation = 51.417527 kcal Electronic energy + Delta-G solvation = -23329.444693 eV Core-core repulsion = 20013.967132 eV Total energy + Delta-G solvation = -3315.477561 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 317.126 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.30584 -39.88106 -37.88446 -36.72345 -35.57600 -34.66759 -32.10252 -31.34992 -30.55335 -29.15325 -26.17687 -25.35260 -24.05867 -23.78535 -22.18614 -21.83411 -19.88266 -19.44454 -18.98975 -18.66873 -16.91497 -16.68558 -16.57002 -16.17263 -15.68996 -15.57558 -15.26898 -15.02297 -14.62382 -14.46442 -14.45907 -14.28216 -13.98972 -13.74006 -13.64292 -13.51413 -13.15613 -13.03818 -12.92188 -12.71333 -12.43013 -12.34477 -12.25183 -12.01327 -11.94144 -11.81418 -11.72853 -11.39457 -10.73482 -10.47003 -10.02580 -9.31950 -8.80423 -8.31805 -8.15219 -6.50171 -0.36931 0.50256 0.54830 0.95232 1.37488 1.44170 1.52396 1.64728 1.68822 2.00884 2.28085 2.41390 2.91019 2.95468 2.98973 3.93232 4.00154 4.00732 4.01339 4.22641 4.29703 4.36694 4.46437 4.56203 4.64683 4.69307 4.77796 4.87207 4.91140 5.01010 5.03394 5.10679 5.13976 5.25561 5.29971 5.37116 5.41634 5.46773 5.51709 5.54206 5.67980 5.80285 5.83821 6.06678 6.35568 6.47777 6.62240 7.23436 8.71766 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.008740 B = 0.004644 C = 0.003195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3202.799002 B = 6028.031102 C = 8761.342802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.114 4.114 3 C -0.117 4.117 4 C 0.111 3.889 5 N -0.533 5.533 6 C 0.237 3.763 7 C -0.553 4.553 8 H 0.054 0.946 9 C 0.035 3.965 10 N -0.910 5.910 11 Si 0.956 3.044 12 H -0.274 1.274 13 H -0.280 1.280 14 H -0.275 1.275 15 C 0.572 3.428 16 S -0.713 6.713 17 N -0.630 5.630 18 C 0.153 3.847 19 C -0.128 4.128 20 C -0.051 4.051 21 C -0.040 4.040 22 C 0.287 3.713 23 N -0.466 5.466 24 C -0.057 4.057 25 C -0.083 4.083 26 H 0.053 0.947 27 H 0.066 0.934 28 H 0.050 0.950 29 H 0.068 0.932 30 H 0.065 0.935 31 H 0.060 0.940 32 H 0.055 0.945 33 H 0.085 0.915 34 H 0.097 0.903 35 H 0.042 0.958 36 H 0.035 0.965 37 H 0.272 0.728 38 H 0.420 0.580 39 H 0.147 0.853 40 H 0.161 0.839 41 H 0.150 0.850 42 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.948 0.165 5.100 6.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.152 4.152 3 C -0.156 4.156 4 C -0.011 4.011 5 N -0.234 5.234 6 C 0.114 3.886 7 C -0.592 4.592 8 H 0.072 0.928 9 C -0.168 4.168 10 N -0.548 5.548 11 Si 0.781 3.219 12 H -0.199 1.199 13 H -0.206 1.206 14 H -0.200 1.200 15 C 0.209 3.791 16 S -0.581 6.581 17 N -0.258 5.258 18 C 0.058 3.942 19 C -0.149 4.149 20 C -0.073 4.073 21 C -0.044 4.044 22 C -0.027 4.027 23 N -0.143 5.143 24 C -0.080 4.080 25 C -0.106 4.106 26 H 0.072 0.928 27 H 0.085 0.915 28 H 0.070 0.930 29 H 0.086 0.914 30 H 0.084 0.916 31 H 0.079 0.921 32 H 0.074 0.926 33 H 0.103 0.897 34 H 0.115 0.885 35 H 0.060 0.940 36 H 0.053 0.947 37 H 0.081 0.919 38 H 0.262 0.738 39 H 0.164 0.836 40 H 0.178 0.822 41 H 0.168 0.832 42 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -3.775 0.434 7.217 8.156 hybrid contribution 0.987 0.263 -2.249 2.471 sum -2.788 0.697 4.968 5.739 Atomic orbital electron populations 1.21720 0.94830 1.02212 1.01661 1.21376 0.96653 0.94719 1.02470 1.21778 0.93305 0.98868 1.01673 1.22020 0.95466 0.79314 1.04335 1.47614 1.56517 1.14810 1.04418 1.19492 0.96969 0.92555 0.79586 1.21483 0.96579 1.33537 1.07575 0.92770 1.25518 1.01297 0.94087 0.95860 1.69974 1.37209 1.32922 1.14673 0.85532 0.80005 0.78217 0.78114 1.19860 1.20562 1.20028 1.21989 0.81150 0.84597 0.91360 1.93020 1.77824 1.70470 1.16784 1.42288 1.62897 1.10409 1.10203 1.17983 0.94762 0.95626 0.85803 1.21056 0.94483 0.99781 0.99533 1.21055 0.98969 0.97443 0.89825 1.16061 0.98118 1.02400 0.87861 1.25744 0.92291 0.92212 0.92484 1.81251 1.09583 1.11307 1.12109 1.21056 0.95248 0.93942 0.97735 1.21377 1.00717 0.96368 0.92131 0.92821 0.91478 0.93037 0.91351 0.91597 0.92139 0.92609 0.89671 0.88498 0.94000 0.94739 0.91901 0.73752 0.83576 0.82178 0.83212 0.83972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.88 9.91 71.98 0.71 -2.16 16 2 C -0.11 -2.58 5.93 30.59 0.18 -2.39 16 3 C -0.12 -3.26 5.54 30.60 0.17 -3.09 16 4 C 0.11 3.58 5.17 86.38 0.45 4.03 16 5 N -0.53 -19.20 2.46 -714.16 -1.75 -20.95 16 6 C 0.24 9.59 4.96 85.63 0.42 10.01 16 7 C -0.55 -25.19 9.39 25.60 0.24 -24.95 16 8 H 0.05 2.59 7.81 -2.91 -0.02 2.57 16 9 C 0.03 1.62 5.46 84.65 0.46 2.09 16 10 N -0.91 -44.43 13.29 21.45 0.28 -44.14 16 11 Si 0.96 37.91 29.54 68.60 2.03 39.93 16 12 H -0.27 -10.96 7.11 99.48 0.71 -10.26 16 13 H -0.28 -11.08 7.11 99.48 0.71 -10.37 16 14 H -0.27 -10.65 7.11 99.48 0.71 -9.94 16 15 C 0.57 20.41 7.55 179.06 1.35 21.76 16 16 S -0.71 -27.08 24.20 -56.49 -1.37 -28.45 16 17 N -0.63 -19.90 5.17 -189.95 -0.98 -20.88 16 18 C 0.15 4.22 5.93 38.35 0.23 4.45 16 19 C -0.13 -2.88 9.95 22.35 0.22 -2.66 16 20 C -0.05 -0.98 9.75 22.51 0.22 -0.76 16 21 C -0.04 -0.83 5.74 -21.29 -0.12 -0.96 16 22 C 0.29 6.62 15.33 88.33 1.35 7.97 16 23 N -0.47 -12.79 18.54 19.00 0.35 -12.43 16 24 C -0.06 -1.26 9.75 22.51 0.22 -1.04 16 25 C -0.08 -2.21 7.84 22.35 0.18 -2.04 16 26 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 27 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 28 H 0.05 1.03 8.14 -2.38 -0.02 1.01 16 29 H 0.07 1.45 8.14 -2.38 -0.02 1.43 16 30 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.06 1.84 8.12 -2.39 -0.02 1.82 16 32 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.08 2.73 8.07 -2.39 -0.02 2.71 16 34 H 0.10 3.30 6.58 -2.39 -0.02 3.29 16 35 H 0.04 1.81 8.07 -2.39 -0.02 1.79 16 36 H 0.03 1.42 6.31 -2.39 -0.02 1.40 16 37 H 0.27 12.65 8.31 -92.71 -0.77 11.88 16 38 H 0.42 13.24 6.52 -92.71 -0.60 12.64 16 39 H 0.15 3.02 8.06 -2.91 -0.02 2.99 16 40 H 0.16 2.18 8.06 -2.91 -0.02 2.16 16 41 H 0.15 2.70 8.06 -2.91 -0.02 2.68 16 42 H 0.14 4.26 6.10 -8.10 -0.05 4.21 16 Total: -1.00 -54.73 371.61 5.24 -49.49 By element: Atomic # 1 Polarization: 26.77 SS G_CDS: 0.40 Total: 27.17 kcal Atomic # 6 Polarization: 3.98 SS G_CDS: 6.29 Total: 10.26 kcal Atomic # 7 Polarization: -96.31 SS G_CDS: -2.10 Total: -98.40 kcal Atomic # 14 Polarization: 37.91 SS G_CDS: 2.03 Total: 39.93 kcal Atomic # 16 Polarization: -27.08 SS G_CDS: -1.37 Total: -28.45 kcal Total: -54.73 5.24 -49.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245899230.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.908 kcal (2) G-P(sol) polarization free energy of solvation -54.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.490 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds