Wall clock time and date at job start Tue Mar 31 2020 11:25:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50692 * 109.47453 * 2 1 4 4 C 1.38285 * 119.92623 * 269.72743 * 3 2 1 5 5 C 1.38118 * 120.06874 * 179.72730 * 4 3 2 6 6 C 1.38877 * 119.92809 * 0.54112 * 5 4 3 7 7 N 1.39889 * 120.07146 * 179.71139 * 6 5 4 8 8 C 1.34782 * 119.99747 * 221.88033 * 7 6 5 9 9 S 1.71195 * 119.99890 * 5.51893 * 8 7 6 10 10 N 1.34771 * 119.99707 * 185.52390 * 8 7 6 11 11 C 1.46505 * 120.00076 * 180.02562 * 10 8 7 12 12 C 1.50702 * 109.47138 * 89.99346 * 11 10 8 13 13 H 1.07994 * 120.00050 * 0.02562 * 12 11 10 14 14 C 1.37875 * 119.99863 * 179.97438 * 12 11 10 15 15 N 1.31514 * 119.99966 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 119.99922 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.46741 * 90.00754 * 16 14 12 18 18 H 1.48503 * 109.47153 * 210.00281 * 16 14 12 19 19 H 1.48498 * 109.47291 * 330.00403 * 16 14 12 20 20 C 1.46503 * 120.00213 * 359.97438 * 10 8 7 21 21 C 1.53004 * 109.46846 * 90.00576 * 20 10 8 22 22 C 1.47201 * 109.47220 * 180.02562 * 21 20 10 23 23 N 8.98087 * 123.00200 * 174.37730 * 3 1 2 24 24 C 1.38886 * 119.85717 * 359.72770 * 6 5 4 25 25 C 1.38106 * 119.92816 * 0.02562 * 24 6 5 26 26 H 1.08991 * 109.47407 * 300.00204 * 1 2 3 27 27 H 1.08997 * 109.47542 * 179.97438 * 1 2 3 28 28 H 1.09007 * 109.46938 * 60.00342 * 1 2 3 29 29 H 1.09006 * 109.46710 * 120.00160 * 2 1 3 30 30 H 1.09004 * 109.47449 * 239.99410 * 2 1 3 31 31 H 1.07995 * 119.96601 * 359.96800 * 4 3 2 32 32 H 1.08000 * 120.03347 * 180.24749 * 5 4 3 33 33 H 0.97000 * 119.99924 * 41.87785 * 7 6 5 34 34 H 1.08998 * 109.47214 * 210.00224 * 11 10 8 35 35 H 1.08996 * 109.46742 * 329.99558 * 11 10 8 36 36 H 0.97004 * 120.00177 * 179.97438 * 15 14 12 37 37 H 1.09001 * 109.47097 * 209.99769 * 20 10 8 38 38 H 1.08997 * 109.47437 * 330.00541 * 20 10 8 39 39 H 1.09005 * 109.46616 * 300.00002 * 21 20 10 40 40 H 1.08997 * 109.47132 * 59.99777 * 21 20 10 41 41 H 1.07997 * 120.03342 * 179.97438 * 24 6 5 42 42 H 1.07996 * 119.96419 * 179.97438 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 6 2.2677 2.0692 -1.1985 5 6 2.7228 3.3733 -1.2019 6 6 2.9548 4.0294 -0.0001 7 7 3.4215 5.3481 -0.0001 8 6 4.3807 5.7234 0.8691 9 16 5.1278 4.5573 1.8754 10 7 4.7516 7.0168 0.9461 11 6 5.7947 7.4248 1.8905 12 6 7.1412 7.3402 1.2191 13 1 7.2129 7.0155 0.1917 14 6 8.2816 7.6784 1.9164 15 7 8.1943 8.0743 3.1674 16 14 9.9506 7.5742 1.0839 17 1 10.2618 8.8730 0.4347 18 1 10.9910 7.2659 2.0977 19 1 9.9259 6.5011 0.0578 20 6 4.1126 8.0147 0.0846 21 6 2.8853 8.5902 0.7944 22 6 2.2428 9.5924 -0.0714 23 7 1.7470 10.3667 -0.7379 24 6 2.7227 3.3733 1.2018 25 6 2.2627 2.0711 1.1984 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 -0.8901 29 1 1.8932 -0.5139 0.8900 30 1 1.8934 -0.5139 -0.8899 31 1 2.0918 1.5568 -2.1327 32 1 2.9027 3.8805 -2.1383 33 1 3.0548 5.9923 -0.6257 34 1 5.6127 8.4502 2.2122 35 1 5.7787 6.7640 2.7572 36 1 8.9966 8.3119 3.6581 37 1 4.8190 8.8172 -0.1277 38 1 3.8049 7.5447 -0.8495 39 1 2.1790 7.7877 1.0068 40 1 3.1930 9.0602 1.7285 41 1 2.9025 3.8807 2.1381 42 1 2.0825 1.5602 2.1327 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001247327354.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:25:09 Heat of formation + Delta-G solvation = 71.892524 kcal Electronic energy + Delta-G solvation = -23284.394575 eV Core-core repulsion = 19969.804876 eV Total energy + Delta-G solvation = -3314.589699 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 317.126 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.14512 -38.75943 -36.88909 -35.83017 -33.29661 -32.88420 -31.62790 -30.84380 -28.81431 -27.17113 -25.54912 -24.02057 -23.15377 -22.70917 -20.91289 -20.65238 -18.36047 -17.93132 -17.47531 -16.54867 -15.86951 -15.53232 -15.34836 -15.08243 -14.68021 -14.37912 -14.04452 -13.86006 -13.80688 -13.42466 -13.25498 -13.10343 -12.80454 -12.69173 -12.52131 -12.27474 -12.06991 -11.64102 -11.51566 -11.32311 -11.21734 -11.03816 -10.99421 -10.81285 -10.76811 -10.41669 -10.22324 -9.95364 -9.03999 -8.80815 -8.52200 -7.91194 -7.07920 -6.30117 -6.13742 -4.17726 1.23553 1.60841 2.02150 2.39944 2.59556 2.63225 3.16103 3.26996 3.35630 3.38918 3.43879 3.89962 3.99554 4.39023 4.58879 4.71242 4.76732 4.84570 5.05759 5.08953 5.14867 5.23189 5.27212 5.42800 5.46927 5.51587 5.59218 5.65996 5.69448 5.79283 5.96340 6.05198 6.07555 6.27133 6.41749 6.56200 6.67666 6.78775 7.02587 7.11736 7.34352 7.34703 7.41455 7.75761 7.80504 8.03281 8.80606 9.46194 10.94755 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.011163 B = 0.003945 C = 0.003157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2507.645961 B = 7095.398264 C = 8867.485614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.083 4.083 3 C -0.088 4.088 4 C -0.116 4.116 5 C -0.130 4.130 6 C 0.141 3.859 7 N -0.653 5.653 8 C 0.551 3.449 9 S -0.613 6.613 10 N -0.535 5.535 11 C 0.236 3.764 12 C -0.523 4.523 13 H 0.057 0.943 14 C 0.070 3.930 15 N -0.889 5.889 16 Si 0.898 3.102 17 H -0.282 1.282 18 H -0.284 1.284 19 H -0.273 1.273 20 C 0.098 3.902 21 C -0.047 4.047 22 C 0.213 3.787 23 N -0.433 5.433 24 C -0.067 4.067 25 C -0.112 4.112 26 H 0.056 0.944 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.071 0.929 30 H 0.068 0.932 31 H 0.119 0.881 32 H 0.118 0.882 33 H 0.398 0.602 34 H 0.042 0.958 35 H 0.082 0.918 36 H 0.265 0.735 37 H 0.112 0.888 38 H 0.074 0.926 39 H 0.108 0.892 40 H 0.124 0.876 41 H 0.144 0.856 42 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.685 -8.136 -6.561 18.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.121 4.121 3 C -0.089 4.089 4 C -0.136 4.136 5 C -0.151 4.151 6 C 0.047 3.953 7 N -0.283 5.283 8 C 0.195 3.805 9 S -0.478 6.478 10 N -0.239 5.239 11 C 0.118 3.882 12 C -0.562 4.562 13 H 0.075 0.925 14 C -0.133 4.133 15 N -0.527 5.527 16 Si 0.726 3.274 17 H -0.208 1.208 18 H -0.210 1.210 19 H -0.198 1.198 20 C -0.031 4.031 21 C -0.089 4.089 22 C -0.105 4.105 23 N -0.110 5.110 24 C -0.090 4.090 25 C -0.132 4.132 26 H 0.075 0.925 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.089 0.911 30 H 0.087 0.913 31 H 0.137 0.863 32 H 0.137 0.863 33 H 0.237 0.763 34 H 0.060 0.940 35 H 0.100 0.900 36 H 0.075 0.925 37 H 0.130 0.870 38 H 0.093 0.907 39 H 0.126 0.874 40 H 0.142 0.858 41 H 0.162 0.838 42 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -15.695 -7.498 -6.658 18.625 hybrid contribution 0.867 0.711 -1.109 1.577 sum -14.828 -6.787 -7.767 18.062 Atomic orbital electron populations 1.21744 0.95031 1.01362 1.02152 1.20506 0.95858 0.93006 1.02697 1.19836 0.99760 0.96044 0.93243 1.20625 1.01562 0.93948 0.97426 1.20810 1.03045 0.95071 0.96157 1.17353 0.99725 0.83898 0.94332 1.42404 1.38154 1.11035 1.36722 1.22407 0.82773 0.88713 0.86610 1.93224 1.64742 1.42109 1.47759 1.47879 1.36408 1.02308 1.37307 1.20074 0.82780 0.96821 0.88502 1.21104 0.90481 1.45948 0.98706 0.92489 1.24802 0.99037 0.94777 0.94729 1.69899 1.29509 1.44397 1.08882 0.86486 0.83441 0.78165 0.79309 1.20822 1.20962 1.19804 1.21647 0.94470 0.94286 0.92728 1.19767 0.96934 0.94633 0.97549 1.28878 0.93612 0.94076 0.93958 1.81225 1.09473 1.10470 1.09855 1.21399 0.93888 0.95443 0.98225 1.20802 1.00422 0.94594 0.97389 0.92512 0.92728 0.92720 0.91079 0.91331 0.86278 0.86349 0.76304 0.94025 0.90027 0.92536 0.87006 0.90742 0.87383 0.85783 0.83794 0.86009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.89 37.16 0.37 -0.71 16 2 C -0.08 -0.72 6.06 -27.89 -0.17 -0.89 16 3 C -0.09 -0.99 5.14 -104.59 -0.54 -1.52 16 4 C -0.12 -1.29 9.69 -39.61 -0.38 -1.67 16 5 C -0.13 -1.55 9.97 -39.39 -0.39 -1.94 16 6 C 0.14 1.94 5.91 -83.70 -0.49 1.45 16 7 N -0.65 -8.78 5.20 -11.40 -0.06 -8.84 16 8 C 0.55 9.64 7.46 -86.92 -0.65 8.99 16 9 S -0.61 -13.73 24.45 -107.50 -2.63 -16.36 16 10 N -0.53 -8.99 2.46 -177.08 -0.43 -9.42 16 11 C 0.24 5.21 4.92 -5.19 -0.03 5.18 16 12 C -0.52 -13.36 9.39 -34.44 -0.32 -13.68 16 13 H 0.06 1.49 7.81 -52.49 -0.41 1.08 16 14 C 0.07 1.86 5.46 -17.82 -0.10 1.76 16 15 N -0.89 -24.65 13.29 55.43 0.74 -23.91 16 16 Si 0.90 21.09 29.54 -169.99 -5.02 16.07 16 17 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 18 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 19 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 20 C 0.10 1.14 5.18 -4.04 -0.02 1.12 16 21 C -0.05 -0.43 6.03 -29.52 -0.18 -0.60 16 22 C 0.21 2.29 15.43 -20.77 -0.32 1.97 16 23 N -0.43 -5.85 18.53 42.14 0.78 -5.07 16 24 C -0.07 -0.97 7.86 -39.39 -0.31 -1.28 16 25 C -0.11 -1.40 9.69 -39.61 -0.38 -1.79 16 26 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.07 0.60 8.08 -51.93 -0.42 0.18 16 30 H 0.07 0.54 8.08 -51.93 -0.42 0.12 16 31 H 0.12 1.06 8.06 -52.49 -0.42 0.63 16 32 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 33 H 0.40 4.04 6.52 -40.82 -0.27 3.77 16 34 H 0.04 0.91 8.07 -51.93 -0.42 0.49 16 35 H 0.08 2.08 6.58 -51.93 -0.34 1.74 16 36 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 37 H 0.11 1.39 8.07 -51.93 -0.42 0.97 16 38 H 0.07 0.70 6.29 -51.93 -0.33 0.38 16 39 H 0.11 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.12 1.11 8.14 -51.93 -0.42 0.68 16 41 H 0.14 2.32 6.27 -49.86 -0.31 2.01 16 42 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 LS Contribution 371.83 15.07 5.60 5.60 Total: -1.00 -32.46 371.83 -10.79 -43.25 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: -5.85 Total: 2.31 kcal Atomic # 6 Polarization: 0.29 SS G_CDS: -3.92 Total: -3.62 kcal Atomic # 7 Polarization: -48.27 SS G_CDS: 1.02 Total: -47.25 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Atomic # 16 Polarization: -13.73 SS G_CDS: -2.63 Total: -16.36 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -32.46 -10.79 -43.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001247327354.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.142 kcal (2) G-P(sol) polarization free energy of solvation -32.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.249 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds