Wall clock time and date at job start Tue Mar 31 2020 11:25:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50692 * 109.47453 * 2 1 4 4 C 1.38285 * 119.92623 * 269.72743 * 3 2 1 5 5 C 1.38118 * 120.06874 * 179.72730 * 4 3 2 6 6 C 1.38877 * 119.92809 * 0.54112 * 5 4 3 7 7 N 1.39889 * 120.07146 * 179.71139 * 6 5 4 8 8 C 1.34782 * 119.99747 * 221.88033 * 7 6 5 9 9 S 1.71195 * 119.99890 * 5.51893 * 8 7 6 10 10 N 1.34771 * 119.99707 * 185.52390 * 8 7 6 11 11 C 1.46505 * 120.00076 * 180.02562 * 10 8 7 12 12 C 1.50702 * 109.47138 * 89.99346 * 11 10 8 13 13 H 1.07994 * 120.00050 * 0.02562 * 12 11 10 14 14 C 1.37875 * 119.99863 * 179.97438 * 12 11 10 15 15 N 1.31514 * 119.99966 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 119.99922 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.46741 * 90.00754 * 16 14 12 18 18 H 1.48503 * 109.47153 * 210.00281 * 16 14 12 19 19 H 1.48498 * 109.47291 * 330.00403 * 16 14 12 20 20 C 1.46503 * 120.00213 * 359.97438 * 10 8 7 21 21 C 1.53004 * 109.46846 * 90.00576 * 20 10 8 22 22 C 1.47201 * 109.47220 * 180.02562 * 21 20 10 23 23 N 8.98087 * 123.00200 * 174.37730 * 3 1 2 24 24 C 1.38886 * 119.85717 * 359.72770 * 6 5 4 25 25 C 1.38106 * 119.92816 * 0.02562 * 24 6 5 26 26 H 1.08991 * 109.47407 * 300.00204 * 1 2 3 27 27 H 1.08997 * 109.47542 * 179.97438 * 1 2 3 28 28 H 1.09007 * 109.46938 * 60.00342 * 1 2 3 29 29 H 1.09006 * 109.46710 * 120.00160 * 2 1 3 30 30 H 1.09004 * 109.47449 * 239.99410 * 2 1 3 31 31 H 1.07995 * 119.96601 * 359.96800 * 4 3 2 32 32 H 1.08000 * 120.03347 * 180.24749 * 5 4 3 33 33 H 0.97000 * 119.99924 * 41.87785 * 7 6 5 34 34 H 1.08998 * 109.47214 * 210.00224 * 11 10 8 35 35 H 1.08996 * 109.46742 * 329.99558 * 11 10 8 36 36 H 0.97004 * 120.00177 * 179.97438 * 15 14 12 37 37 H 1.09001 * 109.47097 * 209.99769 * 20 10 8 38 38 H 1.08997 * 109.47437 * 330.00541 * 20 10 8 39 39 H 1.09005 * 109.46616 * 300.00002 * 21 20 10 40 40 H 1.08997 * 109.47132 * 59.99777 * 21 20 10 41 41 H 1.07997 * 120.03342 * 179.97438 * 24 6 5 42 42 H 1.07996 * 119.96419 * 179.97438 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 6 2.2677 2.0692 -1.1985 5 6 2.7228 3.3733 -1.2019 6 6 2.9548 4.0294 -0.0001 7 7 3.4215 5.3481 -0.0001 8 6 4.3807 5.7234 0.8691 9 16 5.1278 4.5573 1.8754 10 7 4.7516 7.0168 0.9461 11 6 5.7947 7.4248 1.8905 12 6 7.1412 7.3402 1.2191 13 1 7.2129 7.0155 0.1917 14 6 8.2816 7.6784 1.9164 15 7 8.1943 8.0743 3.1674 16 14 9.9506 7.5742 1.0839 17 1 10.2618 8.8730 0.4347 18 1 10.9910 7.2659 2.0977 19 1 9.9259 6.5011 0.0578 20 6 4.1126 8.0147 0.0846 21 6 2.8853 8.5902 0.7944 22 6 2.2428 9.5924 -0.0714 23 7 1.7470 10.3667 -0.7379 24 6 2.7227 3.3733 1.2018 25 6 2.2627 2.0711 1.1984 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 -0.8901 29 1 1.8932 -0.5139 0.8900 30 1 1.8934 -0.5139 -0.8899 31 1 2.0918 1.5568 -2.1327 32 1 2.9027 3.8805 -2.1383 33 1 3.0548 5.9923 -0.6257 34 1 5.6127 8.4502 2.2122 35 1 5.7787 6.7640 2.7572 36 1 8.9966 8.3119 3.6581 37 1 4.8190 8.8172 -0.1277 38 1 3.8049 7.5447 -0.8495 39 1 2.1790 7.7877 1.0068 40 1 3.1930 9.0602 1.7285 41 1 2.9025 3.8807 2.1381 42 1 2.0825 1.5602 2.1327 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001247327354.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:25:08 Heat of formation + Delta-G solvation = 55.670694 kcal Electronic energy + Delta-G solvation = -23285.098006 eV Core-core repulsion = 19969.804876 eV Total energy + Delta-G solvation = -3315.293130 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 317.126 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.31439 -39.88296 -37.86419 -36.99274 -34.87305 -33.98681 -32.84571 -31.81083 -30.04777 -28.64339 -26.66776 -25.46010 -24.21074 -23.83711 -22.10941 -21.67315 -19.55711 -19.02717 -18.75224 -18.30219 -17.14481 -16.53646 -16.46388 -16.21357 -16.11978 -15.57545 -15.38830 -14.80926 -14.66179 -14.45202 -14.31049 -14.14651 -13.91746 -13.80704 -13.63420 -13.45774 -13.24933 -12.99299 -12.84736 -12.60028 -12.54640 -12.24724 -12.12953 -12.06063 -11.96281 -11.78269 -11.69817 -11.58228 -10.55565 -10.39940 -9.80426 -9.06661 -8.73431 -8.15749 -7.95146 -6.24396 0.08143 0.63106 0.75355 1.08587 1.39848 1.44936 1.51892 1.60264 1.72461 1.76526 2.29303 2.45303 2.94141 3.02381 3.19177 3.67910 3.79614 3.99114 4.02250 4.20419 4.23463 4.36424 4.50708 4.54999 4.58244 4.66660 4.77134 4.80632 4.82102 4.92880 5.17721 5.18673 5.22258 5.29884 5.34972 5.47151 5.48033 5.56511 5.71047 5.83810 5.85568 5.92191 6.08226 6.22442 6.45712 6.48927 6.80243 7.41824 8.91595 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.011163 B = 0.003945 C = 0.003157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2507.645961 B = 7095.398264 C = 8867.485614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.083 4.083 3 C -0.084 4.084 4 C -0.117 4.117 5 C -0.124 4.124 6 C 0.113 3.887 7 N -0.623 5.623 8 C 0.579 3.421 9 S -0.721 6.721 10 N -0.531 5.531 11 C 0.253 3.747 12 C -0.525 4.525 13 H 0.049 0.951 14 C 0.021 3.979 15 N -0.919 5.919 16 Si 0.952 3.048 17 H -0.267 1.267 18 H -0.287 1.287 19 H -0.279 1.279 20 C 0.092 3.908 21 C -0.034 4.034 22 C 0.243 3.757 23 N -0.477 5.477 24 C -0.082 4.082 25 C -0.124 4.124 26 H 0.050 0.950 27 H 0.068 0.932 28 H 0.057 0.943 29 H 0.071 0.929 30 H 0.082 0.918 31 H 0.149 0.851 32 H 0.143 0.857 33 H 0.419 0.581 34 H 0.048 0.952 35 H 0.046 0.954 36 H 0.265 0.735 37 H 0.110 0.890 38 H 0.105 0.895 39 H 0.131 0.869 40 H 0.130 0.870 41 H 0.119 0.881 42 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.195 -8.570 -9.189 21.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.121 4.121 3 C -0.084 4.084 4 C -0.136 4.136 5 C -0.145 4.145 6 C 0.020 3.980 7 N -0.253 5.253 8 C 0.218 3.782 9 S -0.589 6.589 10 N -0.234 5.234 11 C 0.133 3.867 12 C -0.564 4.564 13 H 0.067 0.933 14 C -0.179 4.179 15 N -0.559 5.559 16 Si 0.778 3.222 17 H -0.193 1.193 18 H -0.213 1.213 19 H -0.204 1.204 20 C -0.035 4.035 21 C -0.075 4.075 22 C -0.074 4.074 23 N -0.155 5.155 24 C -0.104 4.104 25 C -0.144 4.144 26 H 0.069 0.931 27 H 0.087 0.913 28 H 0.076 0.924 29 H 0.090 0.910 30 H 0.100 0.900 31 H 0.166 0.834 32 H 0.160 0.840 33 H 0.262 0.738 34 H 0.066 0.934 35 H 0.064 0.936 36 H 0.074 0.926 37 H 0.128 0.872 38 H 0.123 0.877 39 H 0.149 0.851 40 H 0.148 0.852 41 H 0.137 0.863 42 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -17.275 -7.918 -9.353 21.180 hybrid contribution 1.206 0.774 -0.363 1.479 sum -16.069 -7.145 -9.716 20.091 Atomic orbital electron populations 1.21717 0.93898 1.02320 1.02020 1.20574 0.96737 0.91311 1.03442 1.20180 0.98312 0.97180 0.92754 1.21023 1.00436 0.93687 0.98495 1.21093 1.01814 0.95440 0.96134 1.17547 1.01425 0.84063 0.94973 1.42163 1.36146 1.11719 1.35298 1.21703 0.82746 0.87687 0.86076 1.93449 1.68388 1.45043 1.51998 1.47562 1.35681 1.02930 1.37207 1.19499 0.82993 0.96077 0.88124 1.21370 0.92097 1.44581 0.98334 0.93282 1.25496 1.02105 0.94988 0.95269 1.69991 1.30122 1.45821 1.09976 0.85654 0.80014 0.78390 0.78150 1.19256 1.21308 1.20427 1.21948 0.95134 0.93310 0.93116 1.19692 0.96064 0.94827 0.96922 1.28868 0.92446 0.93213 0.92907 1.81274 1.11052 1.11906 1.11235 1.21286 0.95133 0.96334 0.97691 1.20970 1.00697 0.94115 0.98626 0.93125 0.91272 0.92380 0.91027 0.89966 0.83372 0.83962 0.73836 0.93401 0.93649 0.92642 0.87199 0.87658 0.85112 0.85171 0.86345 0.85422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.75 9.89 71.98 0.71 -1.04 16 2 C -0.08 -1.24 6.06 29.84 0.18 -1.06 16 3 C -0.08 -1.71 5.14 -19.84 -0.10 -1.81 16 4 C -0.12 -2.23 9.69 22.25 0.22 -2.02 16 5 C -0.12 -2.61 9.97 22.39 0.22 -2.39 16 6 C 0.11 2.97 5.91 38.16 0.23 3.20 16 7 N -0.62 -15.61 5.20 -189.99 -0.99 -16.60 16 8 C 0.58 20.03 7.46 179.05 1.34 21.36 16 9 S -0.72 -33.76 24.45 -56.49 -1.38 -35.14 16 10 N -0.53 -17.37 2.46 -714.16 -1.75 -19.12 16 11 C 0.25 11.31 4.92 85.63 0.42 11.73 16 12 C -0.52 -26.97 9.39 25.60 0.24 -26.73 16 13 H 0.05 2.55 7.81 -2.91 -0.02 2.53 16 14 C 0.02 1.15 5.46 84.65 0.46 1.61 16 15 N -0.92 -51.92 13.29 21.45 0.28 -51.64 16 16 Si 0.95 43.50 29.54 68.60 2.03 45.53 16 17 H -0.27 -11.49 7.11 99.48 0.71 -10.79 16 18 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 19 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 20 C 0.09 1.90 5.18 86.38 0.45 2.35 16 21 C -0.03 -0.51 6.03 28.79 0.17 -0.34 16 22 C 0.24 4.60 15.43 89.45 1.38 5.98 16 23 N -0.48 -11.98 18.53 20.00 0.37 -11.61 16 24 C -0.08 -2.41 7.86 22.39 0.18 -2.23 16 25 C -0.12 -3.10 9.69 22.25 0.22 -2.88 16 26 H 0.05 0.68 8.14 -2.39 -0.02 0.67 16 27 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.06 0.68 8.14 -2.38 -0.02 0.66 16 29 H 0.07 1.07 8.08 -2.38 -0.02 1.06 16 30 H 0.08 1.03 8.08 -2.38 -0.02 1.01 16 31 H 0.15 1.97 8.06 -2.91 -0.02 1.95 16 32 H 0.14 2.28 8.06 -2.91 -0.02 2.26 16 33 H 0.42 7.04 6.52 -92.71 -0.60 6.44 16 34 H 0.05 2.09 8.07 -2.39 -0.02 2.07 16 35 H 0.05 2.41 6.58 -2.39 -0.02 2.39 16 36 H 0.26 14.31 8.31 -92.71 -0.77 13.54 16 37 H 0.11 2.45 8.07 -2.39 -0.02 2.43 16 38 H 0.11 1.57 6.29 -2.39 -0.02 1.55 16 39 H 0.13 1.52 8.14 -2.38 -0.02 1.50 16 40 H 0.13 2.00 8.14 -2.39 -0.02 1.98 16 41 H 0.12 4.08 6.27 -4.59 -0.03 4.05 16 42 H 0.13 2.88 8.06 -2.91 -0.02 2.86 16 Total: -1.00 -74.02 371.83 5.29 -68.74 By element: Atomic # 1 Polarization: 13.71 SS G_CDS: 0.42 Total: 14.13 kcal Atomic # 6 Polarization: -0.59 SS G_CDS: 6.31 Total: 5.72 kcal Atomic # 7 Polarization: -96.88 SS G_CDS: -2.09 Total: -98.97 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.53 kcal Atomic # 16 Polarization: -33.76 SS G_CDS: -1.38 Total: -35.14 kcal Total: -74.02 5.29 -68.74 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001247327354.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.408 kcal (2) G-P(sol) polarization free energy of solvation -74.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.737 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds