Wall clock time and date at job start Tue Mar 31 2020 13:01:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.46848 * 2 1 4 4 H 1.09005 * 109.47227 * 303.39245 * 3 2 1 5 5 C 1.50702 * 109.46847 * 183.39589 * 3 2 1 6 6 H 1.07998 * 119.99920 * 243.26008 * 5 3 2 7 7 C 1.37877 * 120.00306 * 63.26834 * 5 3 2 8 8 N 1.31512 * 120.00156 * 192.99930 * 7 5 3 9 9 Si 1.86805 * 119.99652 * 13.00095 * 7 5 3 10 10 H 1.48491 * 109.47359 * 95.10655 * 9 7 5 11 11 H 1.48503 * 109.46904 * 215.10549 * 9 7 5 12 12 H 1.48494 * 109.47140 * 335.10266 * 9 7 5 13 13 N 1.46898 * 109.47185 * 63.39755 * 3 2 1 14 14 C 1.46907 * 110.99792 * 202.31149 * 13 3 2 15 15 H 1.09000 * 109.46640 * 322.54573 * 14 13 3 16 16 C 1.52996 * 109.47434 * 82.54754 * 14 13 3 17 17 O 1.42902 * 109.46766 * 65.06091 * 16 14 13 18 18 C 1.50703 * 109.46812 * 202.55231 * 14 13 3 19 19 C 1.38239 * 119.99897 * 319.72025 * 18 14 13 20 20 C 1.38229 * 119.99859 * 179.79025 * 19 18 14 21 21 C 1.38238 * 120.00162 * 0.44560 * 20 19 18 22 22 C 1.50693 * 120.00148 * 179.83348 * 21 20 19 23 23 F 1.39904 * 109.47524 * 269.97424 * 22 21 20 24 24 F 1.39899 * 109.47403 * 29.97530 * 22 21 20 25 25 F 1.39905 * 109.47103 * 149.97719 * 22 21 20 26 26 C 1.38234 * 119.99855 * 359.81145 * 21 20 19 27 27 C 1.38228 * 120.00071 * 139.99887 * 18 14 13 28 28 H 1.08996 * 109.46760 * 184.04413 * 1 2 3 29 29 H 1.08996 * 109.47010 * 304.04594 * 1 2 3 30 30 H 1.09000 * 109.46707 * 64.04710 * 1 2 3 31 31 H 1.08995 * 109.47316 * 240.00240 * 2 1 3 32 32 H 1.09003 * 109.47212 * 119.99437 * 2 1 3 33 33 H 0.97001 * 120.00019 * 179.97438 * 8 7 5 34 34 H 1.00894 * 111.00524 * 78.35498 * 13 3 2 35 35 H 1.08996 * 109.47353 * 185.05544 * 16 14 13 36 36 H 1.08998 * 109.47440 * 305.06161 * 16 14 13 37 37 H 0.96706 * 113.99992 * 179.97438 * 17 16 14 38 38 H 1.07998 * 119.99695 * 0.02562 * 19 18 14 39 39 H 1.08002 * 120.00248 * 180.27375 * 20 19 18 40 40 H 1.08007 * 120.00099 * 180.02562 * 26 21 20 41 41 H 1.08001 * 120.00253 * 359.97438 * 27 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6278 1.9736 -0.8581 5 6 3.5446 1.4434 -0.0842 6 1 4.1306 1.8479 0.7278 7 6 4.1731 0.9278 -1.1978 8 7 5.4666 0.6912 -1.1724 9 14 3.1874 0.5655 -2.7427 10 1 3.2754 1.7228 -3.6688 11 1 3.7362 -0.6435 -3.4078 12 1 1.7671 0.3289 -2.3795 13 7 1.6184 2.1109 1.2383 14 6 1.6057 3.5703 1.0708 15 1 2.4460 3.8715 0.4452 16 6 0.2957 3.9959 0.4048 17 8 -0.7981 3.7073 1.2779 18 6 1.7215 4.2318 2.4199 19 6 1.0366 3.7154 3.5040 20 6 1.1463 4.3196 4.7424 21 6 1.9335 5.4457 4.8948 22 6 2.0501 6.1066 6.2441 23 9 1.0494 7.0751 6.3771 24 9 1.9041 5.1442 7.2489 25 9 3.3051 6.7140 6.3589 26 6 2.6142 5.9652 3.8096 27 6 2.5080 5.3583 2.5721 28 1 -0.3633 -1.0251 0.0725 29 1 -0.3633 0.5753 0.8515 30 1 -0.3633 0.4497 -0.9240 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8901 33 1 5.9087 0.3282 -1.9558 34 1 2.2059 1.8410 2.0130 35 1 0.3236 5.0659 0.1989 36 1 0.1687 3.4492 -0.5296 37 1 -1.6625 3.9519 0.9197 38 1 0.4189 2.8377 3.3841 39 1 0.6148 3.9136 5.5903 40 1 3.2296 6.8448 3.9287 41 1 3.0399 5.7642 1.7243 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255154880.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:01:26 Heat of formation + Delta-G solvation = -175.728574 kcal Electronic energy + Delta-G solvation = -27157.786554 eV Core-core repulsion = 22815.556836 eV Total energy + Delta-G solvation = -4342.229718 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.134 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -50.18317 -47.69869 -47.65176 -39.63873 -37.29296 -35.69507 -33.45755 -32.02234 -31.04026 -30.70776 -28.24436 -26.32216 -25.69313 -22.85694 -22.80891 -22.13763 -20.23655 -19.58008 -18.52370 -18.40085 -18.35621 -17.18004 -17.13298 -15.84380 -15.31503 -14.95657 -14.78664 -14.46972 -14.41220 -14.27240 -14.11328 -13.89895 -13.81728 -13.71482 -13.52113 -13.31455 -13.16557 -12.97988 -12.71438 -12.53037 -12.05473 -11.82405 -11.63001 -11.38993 -11.16687 -10.91881 -10.83112 -10.50568 -10.32696 -9.83192 -9.69274 -9.54993 -9.22326 -8.93080 -8.81500 -8.56260 -7.44973 -6.21114 -4.19552 1.03083 1.42418 2.66327 3.19453 3.30602 3.32995 3.60987 3.73240 4.03026 4.32158 4.42384 4.56289 4.80808 4.90853 4.97581 5.03688 5.13313 5.46269 5.55149 5.55718 5.74587 5.88167 5.92772 6.00972 6.07291 6.13840 6.19895 6.29480 6.33824 6.36842 6.63548 6.73387 6.80159 6.92895 7.01702 7.14853 7.30418 7.51492 7.86422 7.98293 8.27762 8.39535 8.84075 9.44667 10.91735 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.019195 B = 0.003505 C = 0.003264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1458.340560 B = 7986.945820 C = 8575.735578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.111 4.111 3 C 0.187 3.813 4 H 0.028 0.972 5 C -0.555 4.555 6 H 0.071 0.929 7 C 0.079 3.921 8 N -0.891 5.891 9 Si 0.861 3.139 10 H -0.283 1.283 11 H -0.287 1.287 12 H -0.245 1.245 13 N -0.663 5.663 14 C 0.123 3.877 15 H 0.076 0.924 16 C 0.094 3.906 17 O -0.554 6.554 18 C -0.036 4.036 19 C -0.077 4.077 20 C -0.081 4.081 21 C -0.194 4.194 22 C 0.509 3.491 23 F -0.181 7.181 24 F -0.179 7.179 25 F -0.180 7.180 26 C -0.078 4.078 27 C -0.118 4.118 28 H 0.029 0.971 29 H 0.066 0.934 30 H 0.034 0.966 31 H 0.052 0.948 32 H 0.052 0.948 33 H 0.264 0.736 34 H 0.338 0.662 35 H 0.037 0.963 36 H 0.050 0.950 37 H 0.365 0.635 38 H 0.147 0.853 39 H 0.130 0.870 40 H 0.130 0.870 41 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.549 9.964 8.695 16.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.149 4.149 3 C 0.078 3.922 4 H 0.045 0.955 5 C -0.593 4.593 6 H 0.089 0.911 7 C -0.124 4.124 8 N -0.527 5.527 9 Si 0.688 3.312 10 H -0.209 1.209 11 H -0.213 1.213 12 H -0.169 1.169 13 N -0.293 5.293 14 C 0.013 3.987 15 H 0.094 0.906 16 C 0.016 3.984 17 O -0.357 6.357 18 C -0.036 4.036 19 C -0.095 4.095 20 C -0.099 4.099 21 C -0.195 4.195 22 C 0.455 3.545 23 F -0.162 7.162 24 F -0.161 7.161 25 F -0.162 7.162 26 C -0.096 4.096 27 C -0.136 4.136 28 H 0.048 0.952 29 H 0.085 0.915 30 H 0.053 0.947 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.073 0.927 34 H 0.156 0.844 35 H 0.055 0.945 36 H 0.068 0.932 37 H 0.210 0.790 38 H 0.165 0.835 39 H 0.148 0.852 40 H 0.147 0.853 41 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -10.563 9.606 8.874 16.810 hybrid contribution 0.429 0.317 -1.152 1.269 sum -10.134 9.923 7.722 16.149 Atomic orbital electron populations 1.21736 0.97764 0.99248 1.01240 1.21845 0.93565 0.98797 1.00718 1.19531 0.93774 0.90889 0.87992 0.95452 1.21711 0.90413 1.42021 1.05162 0.91109 1.24956 0.94635 0.94078 0.98766 1.69980 1.09820 1.43183 1.29745 0.87271 0.82328 0.78004 0.83584 1.20939 1.21295 1.16863 1.60881 1.57635 1.02689 1.08081 1.20526 0.95680 0.90739 0.91768 0.90593 1.22174 0.86751 0.96963 0.92559 1.86583 1.16454 1.87181 1.45529 1.20238 0.93531 0.93904 0.95974 1.21129 0.97824 1.00100 0.90437 1.20948 0.96662 0.93607 0.98664 1.19867 1.06759 1.00869 0.92018 1.18398 0.73525 0.76474 0.86109 1.93206 1.61595 1.64896 1.96536 1.93176 1.95433 1.63607 1.63863 1.93177 1.42138 1.84219 1.96619 1.20784 0.97528 0.99444 0.91831 1.21100 0.99312 0.96138 0.97095 0.95174 0.91457 0.94728 0.92995 0.92912 0.92656 0.84447 0.94507 0.93170 0.78960 0.83504 0.85236 0.85252 0.85067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.50 9.84 37.16 0.37 -2.14 16 2 C -0.11 -2.29 4.85 -26.73 -0.13 -2.42 16 3 C 0.19 3.99 1.36 -68.86 -0.09 3.90 16 4 H 0.03 0.60 5.72 -51.93 -0.30 0.31 16 5 C -0.55 -14.32 8.60 -34.44 -0.30 -14.61 16 6 H 0.07 2.01 8.00 -52.49 -0.42 1.59 16 7 C 0.08 2.15 5.36 -17.82 -0.10 2.06 16 8 N -0.89 -26.10 13.96 55.43 0.77 -25.33 16 9 Si 0.86 20.09 25.73 -169.99 -4.37 15.72 16 10 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 11 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 12 H -0.24 -5.33 5.26 56.52 0.30 -5.03 16 13 N -0.66 -12.04 4.67 -102.16 -0.48 -12.52 16 14 C 0.12 1.99 2.48 -68.86 -0.17 1.82 16 15 H 0.08 1.37 7.41 -51.93 -0.39 0.99 16 16 C 0.09 1.31 6.76 37.16 0.25 1.57 16 17 O -0.55 -7.21 12.02 -35.23 -0.42 -7.63 16 18 C -0.04 -0.53 4.59 -104.62 -0.48 -1.01 16 19 C -0.08 -1.07 8.05 -39.58 -0.32 -1.39 16 20 C -0.08 -1.04 9.40 -39.58 -0.37 -1.41 16 21 C -0.19 -2.50 5.45 -104.63 -0.57 -3.07 16 22 C 0.51 6.28 3.36 36.00 0.12 6.40 16 23 F -0.18 -2.24 17.30 2.25 0.04 -2.20 16 24 F -0.18 -2.24 16.46 2.25 0.04 -2.20 16 25 F -0.18 -2.25 16.46 2.25 0.04 -2.21 16 26 C -0.08 -0.98 9.40 -39.58 -0.37 -1.35 16 27 C -0.12 -1.59 9.67 -39.58 -0.38 -1.97 16 28 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 29 H 0.07 1.16 7.59 -51.93 -0.39 0.76 16 30 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.05 1.14 4.52 -51.93 -0.23 0.90 16 32 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 33 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 34 H 0.34 6.43 7.84 -39.29 -0.31 6.13 16 35 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.05 0.74 7.16 -51.93 -0.37 0.37 16 37 H 0.37 3.20 9.12 45.56 0.42 3.62 16 38 H 0.15 2.11 7.46 -52.49 -0.39 1.72 16 39 H 0.13 1.44 7.60 -52.49 -0.40 1.04 16 40 H 0.13 1.39 7.60 -52.48 -0.40 0.99 16 41 H 0.13 1.60 8.04 -52.49 -0.42 1.18 16 LS Contribution 344.19 15.07 5.19 5.19 Total: -1.00 -28.68 344.19 -6.28 -34.97 By element: Atomic # 1 Polarization: 14.40 SS G_CDS: -4.54 Total: 9.86 kcal Atomic # 6 Polarization: -11.09 SS G_CDS: -2.54 Total: -13.63 kcal Atomic # 7 Polarization: -38.14 SS G_CDS: 0.30 Total: -37.85 kcal Atomic # 8 Polarization: -7.21 SS G_CDS: -0.42 Total: -7.63 kcal Atomic # 9 Polarization: -6.73 SS G_CDS: 0.11 Total: -6.62 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -4.37 Total: 15.72 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -28.68 -6.28 -34.97 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255154880.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -140.762 kcal (2) G-P(sol) polarization free energy of solvation -28.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds