Wall clock time and date at job start Tue Mar 31 2020 13:01:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.46848 * 2 1 4 4 H 1.09005 * 109.47227 * 303.39245 * 3 2 1 5 5 C 1.50702 * 109.46847 * 183.39589 * 3 2 1 6 6 H 1.07998 * 119.99920 * 243.26008 * 5 3 2 7 7 C 1.37877 * 120.00306 * 63.26834 * 5 3 2 8 8 N 1.31512 * 120.00156 * 192.99930 * 7 5 3 9 9 Si 1.86805 * 119.99652 * 13.00095 * 7 5 3 10 10 H 1.48491 * 109.47359 * 95.10655 * 9 7 5 11 11 H 1.48503 * 109.46904 * 215.10549 * 9 7 5 12 12 H 1.48494 * 109.47140 * 335.10266 * 9 7 5 13 13 N 1.46898 * 109.47185 * 63.39755 * 3 2 1 14 14 C 1.46907 * 110.99792 * 202.31149 * 13 3 2 15 15 H 1.09000 * 109.46640 * 322.54573 * 14 13 3 16 16 C 1.52996 * 109.47434 * 82.54754 * 14 13 3 17 17 O 1.42902 * 109.46766 * 65.06091 * 16 14 13 18 18 C 1.50703 * 109.46812 * 202.55231 * 14 13 3 19 19 C 1.38239 * 119.99897 * 319.72025 * 18 14 13 20 20 C 1.38229 * 119.99859 * 179.79025 * 19 18 14 21 21 C 1.38238 * 120.00162 * 0.44560 * 20 19 18 22 22 C 1.50693 * 120.00148 * 179.83348 * 21 20 19 23 23 F 1.39904 * 109.47524 * 269.97424 * 22 21 20 24 24 F 1.39899 * 109.47403 * 29.97530 * 22 21 20 25 25 F 1.39905 * 109.47103 * 149.97719 * 22 21 20 26 26 C 1.38234 * 119.99855 * 359.81145 * 21 20 19 27 27 C 1.38228 * 120.00071 * 139.99887 * 18 14 13 28 28 H 1.08996 * 109.46760 * 184.04413 * 1 2 3 29 29 H 1.08996 * 109.47010 * 304.04594 * 1 2 3 30 30 H 1.09000 * 109.46707 * 64.04710 * 1 2 3 31 31 H 1.08995 * 109.47316 * 240.00240 * 2 1 3 32 32 H 1.09003 * 109.47212 * 119.99437 * 2 1 3 33 33 H 0.97001 * 120.00019 * 179.97438 * 8 7 5 34 34 H 1.00894 * 111.00524 * 78.35498 * 13 3 2 35 35 H 1.08996 * 109.47353 * 185.05544 * 16 14 13 36 36 H 1.08998 * 109.47440 * 305.06161 * 16 14 13 37 37 H 0.96706 * 113.99992 * 179.97438 * 17 16 14 38 38 H 1.07998 * 119.99695 * 0.02562 * 19 18 14 39 39 H 1.08002 * 120.00248 * 180.27375 * 20 19 18 40 40 H 1.08007 * 120.00099 * 180.02562 * 26 21 20 41 41 H 1.08001 * 120.00253 * 359.97438 * 27 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6278 1.9736 -0.8581 5 6 3.5446 1.4434 -0.0842 6 1 4.1306 1.8479 0.7278 7 6 4.1731 0.9278 -1.1978 8 7 5.4666 0.6912 -1.1724 9 14 3.1874 0.5655 -2.7427 10 1 3.2754 1.7228 -3.6688 11 1 3.7362 -0.6435 -3.4078 12 1 1.7671 0.3289 -2.3795 13 7 1.6184 2.1109 1.2383 14 6 1.6057 3.5703 1.0708 15 1 2.4460 3.8715 0.4452 16 6 0.2957 3.9959 0.4048 17 8 -0.7981 3.7073 1.2779 18 6 1.7215 4.2318 2.4199 19 6 1.0366 3.7154 3.5040 20 6 1.1463 4.3196 4.7424 21 6 1.9335 5.4457 4.8948 22 6 2.0501 6.1066 6.2441 23 9 1.0494 7.0751 6.3771 24 9 1.9041 5.1442 7.2489 25 9 3.3051 6.7140 6.3589 26 6 2.6142 5.9652 3.8096 27 6 2.5080 5.3583 2.5721 28 1 -0.3633 -1.0251 0.0725 29 1 -0.3633 0.5753 0.8515 30 1 -0.3633 0.4497 -0.9240 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8901 33 1 5.9087 0.3282 -1.9558 34 1 2.2059 1.8410 2.0130 35 1 0.3236 5.0659 0.1989 36 1 0.1687 3.4492 -0.5296 37 1 -1.6625 3.9519 0.9197 38 1 0.4189 2.8377 3.3841 39 1 0.6148 3.9136 5.5903 40 1 3.2296 6.8448 3.9287 41 1 3.0399 5.7642 1.7243 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255154880.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:01:25 Heat of formation + Delta-G solvation = -194.465709 kcal Electronic energy + Delta-G solvation = -27158.599057 eV Core-core repulsion = 22815.556836 eV Total energy + Delta-G solvation = -4343.042221 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.134 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -51.17089 -48.68861 -48.63510 -40.75176 -38.59213 -37.01664 -34.84503 -33.91511 -32.16239 -31.90212 -29.64403 -27.98366 -26.73869 -24.45112 -23.86485 -23.38031 -21.57634 -21.07035 -19.51052 -19.41588 -19.35940 -19.09622 -18.18573 -17.14962 -16.94718 -16.22899 -15.84936 -15.64866 -15.46840 -15.34430 -15.11982 -15.09981 -14.91168 -14.86228 -14.80278 -14.72673 -14.52189 -14.25645 -14.18074 -13.70732 -13.45527 -13.35122 -13.03743 -12.75908 -12.65820 -12.47452 -12.09207 -12.06970 -11.69095 -11.49315 -11.34135 -11.06370 -10.66808 -10.60426 -9.98090 -9.91011 -9.03465 -8.31372 -6.32947 -0.03413 0.38201 1.33797 1.39202 1.48470 1.66375 2.35073 2.54498 2.73047 3.03889 3.04894 3.40000 3.44269 3.61227 3.80700 3.94275 3.97551 4.36767 4.44941 4.48778 4.52901 4.60246 4.65752 4.70410 4.83653 4.85373 4.86587 5.00232 5.05962 5.22376 5.25831 5.30055 5.40401 5.52293 5.58689 5.66827 5.77138 5.86297 6.13965 6.43258 6.64760 6.81192 7.12356 7.35488 8.84983 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.019195 B = 0.003505 C = 0.003264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1458.340560 B = 7986.945820 C = 8575.735578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.113 4.113 3 C 0.195 3.805 4 H 0.031 0.969 5 C -0.548 4.548 6 H 0.030 0.970 7 C 0.022 3.978 8 N -0.944 5.944 9 Si 0.922 3.078 10 H -0.280 1.280 11 H -0.292 1.292 12 H -0.216 1.216 13 N -0.650 5.650 14 C 0.120 3.880 15 H 0.051 0.949 16 C 0.102 3.898 17 O -0.563 6.563 18 C -0.049 4.049 19 C -0.080 4.080 20 C -0.079 4.079 21 C -0.198 4.198 22 C 0.515 3.485 23 F -0.180 7.180 24 F -0.180 7.180 25 F -0.180 7.180 26 C -0.077 4.077 27 C -0.126 4.126 28 H 0.048 0.952 29 H 0.070 0.930 30 H 0.040 0.960 31 H 0.039 0.961 32 H 0.042 0.958 33 H 0.263 0.737 34 H 0.330 0.670 35 H 0.057 0.943 36 H 0.043 0.957 37 H 0.386 0.614 38 H 0.143 0.857 39 H 0.147 0.853 40 H 0.148 0.852 41 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.965 10.559 8.761 18.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.151 4.151 3 C 0.085 3.915 4 H 0.048 0.952 5 C -0.587 4.587 6 H 0.048 0.952 7 C -0.177 4.177 8 N -0.583 5.583 9 Si 0.747 3.253 10 H -0.206 1.206 11 H -0.218 1.218 12 H -0.139 1.139 13 N -0.278 5.278 14 C 0.010 3.990 15 H 0.069 0.931 16 C 0.023 3.977 17 O -0.369 6.369 18 C -0.049 4.049 19 C -0.099 4.099 20 C -0.097 4.097 21 C -0.199 4.199 22 C 0.461 3.539 23 F -0.161 7.161 24 F -0.161 7.161 25 F -0.162 7.162 26 C -0.095 4.095 27 C -0.144 4.144 28 H 0.067 0.933 29 H 0.089 0.911 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.061 0.939 33 H 0.072 0.928 34 H 0.147 0.853 35 H 0.075 0.925 36 H 0.061 0.939 37 H 0.234 0.766 38 H 0.161 0.839 39 H 0.165 0.835 40 H 0.166 0.834 41 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -13.029 10.221 8.951 18.824 hybrid contribution 1.219 0.199 -1.038 1.614 sum -11.810 10.420 7.913 17.626 Atomic orbital electron populations 1.21609 0.94796 1.00662 1.01733 1.21786 0.96133 0.97489 0.99687 1.19387 0.90509 0.92081 0.89500 0.95159 1.22031 0.92861 1.40247 1.03520 0.95216 1.25800 0.95456 0.94293 1.02146 1.70129 1.11956 1.45504 1.30738 0.86290 0.82275 0.77513 0.79264 1.20585 1.21806 1.13884 1.60909 1.56497 1.04094 1.06324 1.20555 0.96427 0.89338 0.92709 0.93097 1.21986 0.85981 0.97931 0.91753 1.86527 1.17405 1.87389 1.45610 1.20167 0.94688 0.94634 0.95423 1.21073 0.97966 1.00115 0.90707 1.21122 0.96459 0.93387 0.98757 1.20008 1.06627 1.00907 0.92388 1.18254 0.73495 0.76389 0.85771 1.93210 1.61548 1.64835 1.96510 1.93178 1.95432 1.63642 1.63838 1.93179 1.42195 1.84212 1.96600 1.20998 0.97321 0.99819 0.91314 1.21235 0.99235 0.96044 0.97909 0.93313 0.91106 0.94058 0.94234 0.93876 0.92791 0.85340 0.92516 0.93905 0.76560 0.83930 0.83492 0.83390 0.84322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.19 9.84 71.98 0.71 -3.48 16 2 C -0.11 -4.48 4.85 30.60 0.15 -4.34 16 3 C 0.20 8.22 1.36 44.17 0.06 8.28 16 4 H 0.03 1.29 5.72 -2.38 -0.01 1.27 16 5 C -0.55 -29.04 8.60 25.60 0.22 -28.82 16 6 H 0.03 1.78 8.00 -2.91 -0.02 1.75 16 7 C 0.02 1.20 5.36 84.65 0.45 1.65 16 8 N -0.94 -57.26 13.96 21.45 0.30 -56.96 16 9 Si 0.92 41.45 25.73 68.60 1.77 43.21 16 10 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 11 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 12 H -0.22 -8.66 5.26 99.48 0.52 -8.14 16 13 N -0.65 -23.40 4.67 -477.14 -2.23 -25.63 16 14 C 0.12 3.83 2.48 44.17 0.11 3.94 16 15 H 0.05 1.88 7.41 -2.39 -0.02 1.86 16 16 C 0.10 2.67 6.76 71.98 0.49 3.15 16 17 O -0.56 -13.25 12.02 -148.98 -1.79 -15.04 16 18 C -0.05 -1.40 4.59 -19.87 -0.09 -1.49 16 19 C -0.08 -2.16 8.05 22.27 0.18 -1.98 16 20 C -0.08 -1.91 9.40 22.27 0.21 -1.70 16 21 C -0.20 -4.77 5.45 -19.87 -0.11 -4.88 16 22 C 0.51 11.76 3.36 71.23 0.24 12.00 16 23 F -0.18 -4.10 17.30 44.97 0.78 -3.32 16 24 F -0.18 -4.16 16.46 44.97 0.74 -3.42 16 25 F -0.18 -4.19 16.46 44.97 0.74 -3.45 16 26 C -0.08 -1.82 9.40 22.27 0.21 -1.61 16 27 C -0.13 -3.30 9.67 22.27 0.22 -3.08 16 28 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.07 2.23 7.59 -2.39 -0.02 2.21 16 30 H 0.04 1.26 8.14 -2.39 -0.02 1.25 16 31 H 0.04 1.66 4.52 -2.39 -0.01 1.65 16 32 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 33 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 34 H 0.33 12.77 7.84 -89.70 -0.70 12.07 16 35 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.04 1.18 7.16 -2.39 -0.02 1.16 16 37 H 0.39 5.58 9.12 -74.05 -0.68 4.91 16 38 H 0.14 3.94 7.46 -2.91 -0.02 3.92 16 39 H 0.15 2.96 7.60 -2.91 -0.02 2.94 16 40 H 0.15 2.90 7.60 -2.91 -0.02 2.88 16 41 H 0.14 3.33 8.04 -2.91 -0.02 3.31 16 Total: -1.00 -62.37 344.19 2.87 -59.51 By element: Atomic # 1 Polarization: 27.95 SS G_CDS: -0.48 Total: 27.47 kcal Atomic # 6 Polarization: -25.40 SS G_CDS: 3.04 Total: -22.36 kcal Atomic # 7 Polarization: -80.67 SS G_CDS: -1.93 Total: -82.59 kcal Atomic # 8 Polarization: -13.25 SS G_CDS: -1.79 Total: -15.04 kcal Atomic # 9 Polarization: -12.45 SS G_CDS: 2.26 Total: -10.19 kcal Atomic # 14 Polarization: 41.45 SS G_CDS: 1.77 Total: 43.21 kcal Total: -62.37 2.87 -59.51 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255154880.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -134.958 kcal (2) G-P(sol) polarization free energy of solvation -62.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -197.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -194.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds