Wall clock time and date at job start Tue Mar 31 2020 12:58:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47332 * 2 1 4 4 H 1.08995 * 109.47180 * 54.36900 * 3 2 1 5 5 C 1.50701 * 109.47247 * 174.37182 * 3 2 1 6 6 H 1.08004 * 119.99791 * 119.99829 * 5 3 2 7 7 C 1.37872 * 120.00236 * 299.99842 * 5 3 2 8 8 N 1.31519 * 119.99622 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 120.00502 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47315 * 89.99650 * 9 7 5 11 11 H 1.48495 * 109.47284 * 210.00261 * 9 7 5 12 12 H 1.48500 * 109.46843 * 330.00210 * 9 7 5 13 13 N 1.46904 * 109.47288 * 294.37059 * 3 2 1 14 14 C 1.46897 * 111.00012 * 103.94194 * 13 3 2 15 15 C 1.50697 * 109.47240 * 85.45852 * 14 13 3 16 16 C 1.38291 * 119.97199 * 262.74145 * 15 14 13 17 17 C 1.38241 * 120.11156 * 179.76494 * 16 15 14 18 18 C 1.38165 * 120.05480 * 0.50530 * 17 16 15 19 19 C 1.38716 * 119.94466 * 359.74637 * 18 17 16 20 20 O 1.35901 * 120.05650 * 180.02562 * 19 18 17 21 21 C 1.42900 * 117.00044 * 359.97438 * 20 19 18 22 22 C 1.38123 * 119.97354 * 83.01087 * 15 14 13 23 23 C 1.50700 * 120.02628 * 359.96102 * 22 15 14 24 24 F 1.39897 * 109.47453 * 83.08454 * 23 22 15 25 25 F 1.39898 * 109.47085 * 203.08440 * 23 22 15 26 26 F 1.39902 * 109.47262 * 323.08255 * 23 22 15 27 27 H 1.09006 * 109.46715 * 299.85666 * 1 2 3 28 28 H 1.08996 * 109.46929 * 179.85737 * 1 2 3 29 29 H 1.08997 * 109.47345 * 59.85338 * 1 2 3 30 30 H 1.09006 * 109.47724 * 119.99957 * 2 1 3 31 31 H 1.09003 * 109.47547 * 239.99813 * 2 1 3 32 32 H 0.97000 * 119.99992 * 180.02562 * 8 7 5 33 33 H 1.00909 * 110.99566 * 339.99423 * 13 3 2 34 34 H 1.08995 * 109.47056 * 205.45902 * 14 13 3 35 35 H 1.09003 * 109.47104 * 325.45940 * 14 13 3 36 36 H 1.07997 * 119.94295 * 0.02562 * 16 15 14 37 37 H 1.08000 * 119.97578 * 180.25164 * 17 16 15 38 38 H 1.07998 * 120.02954 * 179.72324 * 18 17 16 39 39 H 1.08998 * 109.46900 * 179.97438 * 21 20 19 40 40 H 1.09000 * 109.47273 * 299.99985 * 21 20 19 41 41 H 1.09007 * 109.46780 * 59.99978 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5967 1.9846 0.8352 5 6 3.5406 1.4447 0.1393 6 1 4.1538 1.8864 -0.6322 7 6 4.1305 0.8829 1.2517 8 7 3.3836 0.3455 2.1913 9 14 5.9904 0.8863 1.4248 10 1 6.4199 2.1218 2.1278 11 1 6.4170 -0.3019 2.2067 12 1 6.6130 0.8418 0.0773 13 7 1.6644 2.0947 -1.2616 14 6 0.5335 3.0111 -1.0641 15 6 1.0477 4.3531 -0.6107 16 6 1.0558 4.6711 0.7351 17 6 1.5314 5.8995 1.1546 18 6 1.9901 6.8168 0.2289 19 6 1.9782 6.5023 -1.1221 20 8 2.4294 7.4027 -2.0346 21 6 2.9015 8.6544 -1.5322 22 6 1.5052 5.2667 -1.5401 23 6 1.4912 4.9216 -3.0070 24 9 0.2186 5.1695 -3.5324 25 9 2.4343 5.7060 -3.6797 26 9 1.8079 3.5687 -3.1708 27 1 -0.3633 0.5116 0.8913 28 1 -0.3633 -1.0276 -0.0026 29 1 -0.3634 0.5161 -0.8886 30 1 1.8934 -0.5138 0.8900 31 1 1.8934 -0.5139 -0.8900 32 1 3.7986 -0.0495 2.9741 33 1 1.4558 1.4111 -1.9739 34 1 -0.0078 3.1277 -2.0030 35 1 -0.1362 2.6038 -0.3067 36 1 0.6940 3.9569 1.4599 37 1 1.5405 6.1439 2.2066 38 1 2.3574 7.7781 0.5568 39 1 3.2319 9.2779 -2.3630 40 1 2.0966 9.1581 -0.9971 41 1 3.7368 8.4817 -0.8534 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255155250.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:58:11 Heat of formation + Delta-G solvation = -152.264792 kcal Electronic energy + Delta-G solvation = -28477.532203 eV Core-core repulsion = 24136.319951 eV Total energy + Delta-G solvation = -4341.212252 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.134 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.57497 -47.10150 -46.95528 -40.15348 -37.88252 -36.17963 -32.95969 -31.82209 -31.00420 -29.58260 -27.48420 -27.06881 -25.53358 -24.15839 -22.55836 -21.93491 -20.73612 -19.68689 -18.13633 -17.98286 -17.73055 -17.14418 -16.35800 -15.90155 -15.75129 -14.99171 -14.88342 -14.72251 -14.14523 -13.85509 -13.84565 -13.62742 -13.48136 -13.40504 -13.14952 -13.04709 -12.92233 -12.64924 -12.31449 -12.16093 -11.98162 -11.72581 -11.50043 -11.19686 -11.16297 -11.00316 -10.79134 -10.65593 -10.47981 -10.01047 -9.78148 -9.70967 -9.05452 -8.82718 -8.29382 -8.10680 -7.22617 -5.94091 -3.95508 1.24863 1.56188 3.16786 3.25718 3.34674 3.41006 3.46844 3.74958 4.25367 4.48572 4.55573 4.86275 4.95569 5.02658 5.07642 5.11977 5.25531 5.35737 5.40654 5.46914 5.55430 5.63569 5.83543 5.93884 6.11642 6.12240 6.13009 6.26330 6.38066 6.54351 6.72869 6.79458 6.80464 6.97094 7.19769 7.33389 7.37424 7.77884 7.95421 8.31154 8.56209 8.64249 9.12703 9.69014 11.11941 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.013039 B = 0.005378 C = 0.004722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2146.937996 B = 5205.427464 C = 5927.746770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.148 4.148 3 C 0.216 3.784 4 H 0.031 0.969 5 C -0.483 4.483 6 H 0.062 0.938 7 C 0.054 3.946 8 N -0.899 5.899 9 Si 0.892 3.108 10 H -0.283 1.283 11 H -0.289 1.289 12 H -0.275 1.275 13 N -0.668 5.668 14 C 0.084 3.916 15 C 0.033 3.967 16 C -0.140 4.140 17 C -0.049 4.049 18 C -0.222 4.222 19 C 0.166 3.834 20 O -0.307 6.307 21 C 0.027 3.973 22 C -0.203 4.203 23 C 0.512 3.488 24 F -0.191 7.191 25 F -0.175 7.175 26 F -0.152 7.152 27 H 0.043 0.957 28 H 0.035 0.965 29 H 0.033 0.967 30 H 0.101 0.899 31 H 0.036 0.964 32 H 0.258 0.742 33 H 0.332 0.668 34 H 0.065 0.935 35 H 0.050 0.950 36 H 0.133 0.867 37 H 0.129 0.871 38 H 0.131 0.869 39 H 0.099 0.901 40 H 0.055 0.945 41 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.289 12.936 -4.739 15.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.188 4.188 3 C 0.109 3.891 4 H 0.049 0.951 5 C -0.522 4.522 6 H 0.080 0.920 7 C -0.145 4.145 8 N -0.540 5.540 9 Si 0.720 3.280 10 H -0.210 1.210 11 H -0.215 1.215 12 H -0.200 1.200 13 N -0.299 5.299 14 C -0.046 4.046 15 C 0.032 3.968 16 C -0.159 4.159 17 C -0.067 4.067 18 C -0.241 4.241 19 C 0.120 3.880 20 O -0.219 6.219 21 C -0.068 4.068 22 C -0.205 4.205 23 C 0.458 3.542 24 F -0.172 7.172 25 F -0.156 7.156 26 F -0.133 7.133 27 H 0.062 0.938 28 H 0.054 0.946 29 H 0.052 0.948 30 H 0.119 0.881 31 H 0.055 0.945 32 H 0.068 0.932 33 H 0.150 0.850 34 H 0.083 0.917 35 H 0.068 0.932 36 H 0.151 0.849 37 H 0.147 0.853 38 H 0.149 0.851 39 H 0.118 0.882 40 H 0.073 0.927 41 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -5.769 13.298 -4.781 15.263 hybrid contribution 0.474 -0.546 0.427 0.840 sum -5.295 12.752 -4.353 14.478 Atomic orbital electron populations 1.21900 0.99554 0.99494 0.99691 1.22230 0.91447 1.01963 1.03120 1.19320 0.95572 0.88765 0.85441 0.95137 1.21225 0.91275 1.35338 1.04358 0.92020 1.24917 0.97837 0.95784 0.95995 1.69862 1.34517 1.40026 1.09599 0.86593 0.86162 0.77202 0.78024 1.20982 1.21504 1.19954 1.60665 1.34684 1.22840 1.11687 1.21027 0.93311 0.90500 0.99761 1.19620 0.91078 0.93780 0.92334 1.21005 1.02936 0.97050 0.94863 1.21061 0.93628 0.92738 0.99306 1.21066 1.09495 1.02135 0.91428 1.18526 0.92577 0.88287 0.88659 1.86210 1.76743 1.25485 1.33488 1.23077 0.98912 0.83497 1.01333 1.19125 1.13854 0.95366 0.92194 1.18090 0.73324 0.75423 0.87368 1.93152 1.41257 1.94257 1.88580 1.93182 1.65264 1.74750 1.82440 1.93324 1.92383 1.31504 1.96084 0.93792 0.94604 0.94772 0.88106 0.94499 0.93235 0.84992 0.91651 0.93235 0.84910 0.85299 0.85075 0.88234 0.92660 0.92414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.77 8.91 37.16 0.33 -2.44 16 2 C -0.15 -3.35 5.08 -26.73 -0.14 -3.48 16 3 C 0.22 5.13 1.99 -68.86 -0.14 4.99 16 4 H 0.03 0.78 6.50 -51.93 -0.34 0.44 16 5 C -0.48 -13.14 8.84 -34.44 -0.30 -13.45 16 6 H 0.06 1.76 7.81 -52.48 -0.41 1.35 16 7 C 0.05 1.48 5.29 -17.82 -0.09 1.39 16 8 N -0.90 -25.04 11.29 55.43 0.63 -24.41 16 9 Si 0.89 21.63 29.54 -169.99 -5.02 16.61 16 10 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 11 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 12 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 13 N -0.67 -13.78 4.19 -109.22 -0.46 -14.24 16 14 C 0.08 1.49 4.10 -4.98 -0.02 1.47 16 15 C 0.03 0.59 5.29 -104.65 -0.55 0.04 16 16 C -0.14 -2.34 9.15 -39.56 -0.36 -2.70 16 17 C -0.05 -0.71 10.04 -39.61 -0.40 -1.10 16 18 C -0.22 -3.07 9.04 -39.43 -0.36 -3.43 16 19 C 0.17 2.64 6.59 -39.22 -0.26 2.38 16 20 O -0.31 -4.48 8.20 -19.43 -0.16 -4.64 16 21 C 0.03 0.26 9.81 101.05 0.99 1.25 16 22 C -0.20 -3.58 5.46 -104.48 -0.57 -4.15 16 23 C 0.51 9.02 2.77 36.01 0.10 9.12 16 24 F -0.19 -3.15 17.06 2.25 0.04 -3.11 16 25 F -0.18 -3.12 15.02 2.25 0.03 -3.09 16 26 F -0.15 -2.85 13.06 2.25 0.03 -2.82 16 27 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 28 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.03 0.57 6.63 -51.93 -0.34 0.23 16 30 H 0.10 2.60 5.94 -51.93 -0.31 2.29 16 31 H 0.04 0.82 8.03 -51.93 -0.42 0.41 16 32 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 33 H 0.33 6.52 7.85 -39.29 -0.31 6.21 16 34 H 0.07 1.07 6.60 -51.93 -0.34 0.72 16 35 H 0.05 0.86 6.40 -51.93 -0.33 0.52 16 36 H 0.13 2.19 7.64 -52.49 -0.40 1.79 16 37 H 0.13 1.48 8.06 -52.49 -0.42 1.06 16 38 H 0.13 1.39 6.30 -52.49 -0.33 1.06 16 39 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.05 0.43 7.66 -51.93 -0.40 0.03 16 41 H 0.06 0.51 7.66 -51.93 -0.40 0.11 16 LS Contribution 337.87 15.07 5.09 5.09 Total: -1.00 -29.56 337.87 -6.74 -36.30 By element: Atomic # 1 Polarization: 9.58 SS G_CDS: -5.15 Total: 4.42 kcal Atomic # 6 Polarization: -8.35 SS G_CDS: -1.77 Total: -10.11 kcal Atomic # 7 Polarization: -38.82 SS G_CDS: 0.17 Total: -38.65 kcal Atomic # 8 Polarization: -4.48 SS G_CDS: -0.16 Total: -4.64 kcal Atomic # 9 Polarization: -9.12 SS G_CDS: 0.10 Total: -9.02 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -29.56 -6.74 -36.30 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255155250.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.960 kcal (2) G-P(sol) polarization free energy of solvation -29.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds