Wall clock time and date at job start Tue Mar 31 2020 12:58:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47332 * 2 1 4 4 H 1.08995 * 109.47180 * 54.36900 * 3 2 1 5 5 C 1.50701 * 109.47247 * 174.37182 * 3 2 1 6 6 H 1.08004 * 119.99791 * 119.99829 * 5 3 2 7 7 C 1.37872 * 120.00236 * 299.99842 * 5 3 2 8 8 N 1.31519 * 119.99622 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 120.00502 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47315 * 89.99650 * 9 7 5 11 11 H 1.48495 * 109.47284 * 210.00261 * 9 7 5 12 12 H 1.48500 * 109.46843 * 330.00210 * 9 7 5 13 13 N 1.46904 * 109.47288 * 294.37059 * 3 2 1 14 14 C 1.46897 * 111.00012 * 103.94194 * 13 3 2 15 15 C 1.50697 * 109.47240 * 85.45852 * 14 13 3 16 16 C 1.38291 * 119.97199 * 262.74145 * 15 14 13 17 17 C 1.38241 * 120.11156 * 179.76494 * 16 15 14 18 18 C 1.38165 * 120.05480 * 0.50530 * 17 16 15 19 19 C 1.38716 * 119.94466 * 359.74637 * 18 17 16 20 20 O 1.35901 * 120.05650 * 180.02562 * 19 18 17 21 21 C 1.42900 * 117.00044 * 359.97438 * 20 19 18 22 22 C 1.38123 * 119.97354 * 83.01087 * 15 14 13 23 23 C 1.50700 * 120.02628 * 359.96102 * 22 15 14 24 24 F 1.39897 * 109.47453 * 83.08454 * 23 22 15 25 25 F 1.39898 * 109.47085 * 203.08440 * 23 22 15 26 26 F 1.39902 * 109.47262 * 323.08255 * 23 22 15 27 27 H 1.09006 * 109.46715 * 299.85666 * 1 2 3 28 28 H 1.08996 * 109.46929 * 179.85737 * 1 2 3 29 29 H 1.08997 * 109.47345 * 59.85338 * 1 2 3 30 30 H 1.09006 * 109.47724 * 119.99957 * 2 1 3 31 31 H 1.09003 * 109.47547 * 239.99813 * 2 1 3 32 32 H 0.97000 * 119.99992 * 180.02562 * 8 7 5 33 33 H 1.00909 * 110.99566 * 339.99423 * 13 3 2 34 34 H 1.08995 * 109.47056 * 205.45902 * 14 13 3 35 35 H 1.09003 * 109.47104 * 325.45940 * 14 13 3 36 36 H 1.07997 * 119.94295 * 0.02562 * 16 15 14 37 37 H 1.08000 * 119.97578 * 180.25164 * 17 16 15 38 38 H 1.07998 * 120.02954 * 179.72324 * 18 17 16 39 39 H 1.08998 * 109.46900 * 179.97438 * 21 20 19 40 40 H 1.09000 * 109.47273 * 299.99985 * 21 20 19 41 41 H 1.09007 * 109.46780 * 59.99978 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5967 1.9846 0.8352 5 6 3.5406 1.4447 0.1393 6 1 4.1538 1.8864 -0.6322 7 6 4.1305 0.8829 1.2517 8 7 3.3836 0.3455 2.1913 9 14 5.9904 0.8863 1.4248 10 1 6.4199 2.1218 2.1278 11 1 6.4170 -0.3019 2.2067 12 1 6.6130 0.8418 0.0773 13 7 1.6644 2.0947 -1.2616 14 6 0.5335 3.0111 -1.0641 15 6 1.0477 4.3531 -0.6107 16 6 1.0558 4.6711 0.7351 17 6 1.5314 5.8995 1.1546 18 6 1.9901 6.8168 0.2289 19 6 1.9782 6.5023 -1.1221 20 8 2.4294 7.4027 -2.0346 21 6 2.9015 8.6544 -1.5322 22 6 1.5052 5.2667 -1.5401 23 6 1.4912 4.9216 -3.0070 24 9 0.2186 5.1695 -3.5324 25 9 2.4343 5.7060 -3.6797 26 9 1.8079 3.5687 -3.1708 27 1 -0.3633 0.5116 0.8913 28 1 -0.3633 -1.0276 -0.0026 29 1 -0.3634 0.5161 -0.8886 30 1 1.8934 -0.5138 0.8900 31 1 1.8934 -0.5139 -0.8900 32 1 3.7986 -0.0495 2.9741 33 1 1.4558 1.4111 -1.9739 34 1 -0.0078 3.1277 -2.0030 35 1 -0.1362 2.6038 -0.3067 36 1 0.6940 3.9569 1.4599 37 1 1.5405 6.1439 2.2066 38 1 2.3574 7.7781 0.5568 39 1 3.2319 9.2779 -2.3630 40 1 2.0966 9.1581 -0.9971 41 1 3.7368 8.4817 -0.8534 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255155250.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:58:10 Heat of formation + Delta-G solvation = -168.671315 kcal Electronic energy + Delta-G solvation = -28478.243643 eV Core-core repulsion = 24136.319951 eV Total energy + Delta-G solvation = -4341.923692 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.134 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -50.95275 -48.46082 -48.36847 -41.28228 -39.14198 -37.74528 -34.67136 -33.39501 -32.41308 -30.96791 -28.90594 -28.27330 -26.91859 -25.71265 -24.23571 -23.17805 -22.04190 -21.43432 -19.39868 -19.35137 -19.05863 -18.41138 -18.22376 -17.11236 -16.76902 -16.66693 -16.50614 -15.99054 -15.65423 -15.31028 -15.16331 -15.06178 -14.84906 -14.72295 -14.54966 -14.51556 -14.48115 -14.06620 -13.53675 -13.46808 -13.39554 -13.15280 -13.03933 -12.73444 -12.66350 -12.56313 -12.38075 -12.02219 -11.87428 -11.75914 -11.58691 -11.50038 -10.97464 -10.35995 -10.06178 -9.28198 -8.90219 -8.01703 -6.09675 0.03625 0.36228 1.40619 1.42808 1.52722 1.88607 2.21226 2.46551 2.55049 2.94760 3.24299 3.24820 3.57386 3.75751 3.85495 3.99440 4.17167 4.26062 4.32442 4.41081 4.42668 4.49306 4.54540 4.58962 4.69911 4.74664 4.75916 4.83005 5.10790 5.11991 5.24126 5.34266 5.40217 5.51941 5.58464 5.67570 5.80212 5.94630 6.29492 6.41022 6.73495 6.89961 7.03133 7.58415 9.01583 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.013039 B = 0.005378 C = 0.004722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2146.937996 B = 5205.427464 C = 5927.746770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.143 4.143 3 C 0.227 3.773 4 H 0.012 0.988 5 C -0.500 4.500 6 H 0.041 0.959 7 C 0.015 3.985 8 N -0.917 5.917 9 Si 0.943 3.057 10 H -0.280 1.280 11 H -0.283 1.283 12 H -0.277 1.277 13 N -0.673 5.673 14 C 0.089 3.911 15 C 0.012 3.988 16 C -0.160 4.160 17 C -0.045 4.045 18 C -0.214 4.214 19 C 0.160 3.840 20 O -0.326 6.326 21 C 0.015 3.985 22 C -0.227 4.227 23 C 0.512 3.488 24 F -0.186 7.186 25 F -0.178 7.178 26 F -0.163 7.163 27 H 0.040 0.960 28 H 0.052 0.948 29 H 0.051 0.949 30 H 0.069 0.931 31 H 0.032 0.968 32 H 0.258 0.742 33 H 0.335 0.665 34 H 0.077 0.923 35 H 0.053 0.947 36 H 0.126 0.874 37 H 0.160 0.840 38 H 0.169 0.831 39 H 0.120 0.880 40 H 0.076 0.924 41 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.272 14.583 -4.417 16.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.182 4.182 3 C 0.119 3.881 4 H 0.030 0.970 5 C -0.539 4.539 6 H 0.059 0.941 7 C -0.183 4.183 8 N -0.558 5.558 9 Si 0.770 3.230 10 H -0.206 1.206 11 H -0.209 1.209 12 H -0.202 1.202 13 N -0.304 5.304 14 C -0.041 4.041 15 C 0.010 3.990 16 C -0.179 4.179 17 C -0.063 4.063 18 C -0.232 4.232 19 C 0.113 3.887 20 O -0.239 6.239 21 C -0.079 4.079 22 C -0.230 4.230 23 C 0.458 3.542 24 F -0.168 7.168 25 F -0.159 7.159 26 F -0.144 7.144 27 H 0.060 0.940 28 H 0.071 0.929 29 H 0.070 0.930 30 H 0.087 0.913 31 H 0.051 0.949 32 H 0.068 0.932 33 H 0.154 0.846 34 H 0.096 0.904 35 H 0.071 0.929 36 H 0.144 0.856 37 H 0.178 0.822 38 H 0.186 0.814 39 H 0.138 0.862 40 H 0.094 0.906 41 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -5.759 14.959 -4.468 16.640 hybrid contribution 0.485 -0.938 0.291 1.096 sum -5.274 14.021 -4.177 15.551 Atomic orbital electron populations 1.21755 0.96377 1.00887 1.00443 1.22054 0.94285 1.00667 1.01243 1.19027 0.93619 0.89338 0.86112 0.97049 1.21456 0.93184 1.35298 1.03964 0.94061 1.25499 1.01251 0.95641 0.95861 1.69970 1.35676 1.40341 1.09789 0.85786 0.82114 0.77358 0.77706 1.20559 1.20885 1.20245 1.60508 1.36670 1.22881 1.10356 1.21016 0.92436 0.90139 1.00482 1.19644 0.92470 0.93809 0.93043 1.21117 1.04106 0.98290 0.94375 1.21441 0.92114 0.91676 1.01096 1.21473 1.08036 1.03365 0.90337 1.18718 0.92110 0.88099 0.89738 1.86191 1.76578 1.26948 1.34170 1.23458 0.99887 0.81780 1.02793 1.19241 1.15358 0.96580 0.91780 1.18159 0.73378 0.74873 0.87774 1.93152 1.40866 1.94172 1.88584 1.93165 1.65455 1.74764 1.82559 1.93294 1.92517 1.32412 1.96180 0.94036 0.92889 0.92956 0.91296 0.94931 0.93247 0.84594 0.90441 0.92917 0.85630 0.82225 0.81381 0.86220 0.90585 0.91540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.99 8.91 71.98 0.64 -4.34 16 2 C -0.14 -6.52 5.08 30.59 0.16 -6.36 16 3 C 0.23 10.95 1.99 44.17 0.09 11.04 16 4 H 0.01 0.61 6.50 -2.39 -0.02 0.59 16 5 C -0.50 -27.72 8.84 25.60 0.23 -27.49 16 6 H 0.04 2.40 7.81 -2.91 -0.02 2.38 16 7 C 0.02 0.84 5.29 84.65 0.45 1.29 16 8 N -0.92 -51.59 11.29 21.45 0.24 -51.35 16 9 Si 0.94 44.55 29.54 68.60 2.03 46.58 16 10 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 11 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 12 H -0.28 -13.11 7.11 99.48 0.71 -12.41 16 13 N -0.67 -28.08 4.19 -499.48 -2.09 -30.17 16 14 C 0.09 3.16 4.10 85.56 0.35 3.51 16 15 C 0.01 0.41 5.29 -19.88 -0.11 0.31 16 16 C -0.16 -5.29 9.15 22.28 0.20 -5.09 16 17 C -0.05 -1.21 10.04 22.25 0.22 -0.99 16 18 C -0.21 -5.32 9.04 22.37 0.20 -5.12 16 19 C 0.16 4.85 6.59 22.51 0.15 4.99 16 20 O -0.33 -8.91 8.20 -92.44 -0.76 -9.67 16 21 C 0.01 0.23 9.81 113.37 1.11 1.35 16 22 C -0.23 -7.92 5.46 -19.77 -0.11 -8.03 16 23 C 0.51 17.99 2.77 71.24 0.20 18.18 16 24 F -0.19 -6.08 17.06 44.97 0.77 -5.31 16 25 F -0.18 -6.31 15.02 44.97 0.68 -5.63 16 26 F -0.16 -6.16 13.06 44.97 0.59 -5.57 16 27 H 0.04 1.51 8.14 -2.38 -0.02 1.49 16 28 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 29 H 0.05 1.69 6.63 -2.39 -0.02 1.68 16 30 H 0.07 3.61 5.94 -2.38 -0.01 3.60 16 31 H 0.03 1.46 8.03 -2.39 -0.02 1.45 16 32 H 0.26 13.96 8.31 -92.71 -0.77 13.19 16 33 H 0.34 13.25 7.85 -89.69 -0.70 12.54 16 34 H 0.08 2.51 6.60 -2.39 -0.02 2.50 16 35 H 0.05 1.82 6.40 -2.39 -0.02 1.81 16 36 H 0.13 4.22 7.64 -2.91 -0.02 4.19 16 37 H 0.16 3.17 8.06 -2.91 -0.02 3.14 16 38 H 0.17 2.83 6.30 -2.91 -0.02 2.81 16 39 H 0.12 1.40 8.14 -2.39 -0.02 1.38 16 40 H 0.08 0.90 7.66 -2.39 -0.02 0.88 16 41 H 0.07 0.95 7.66 -2.38 -0.02 0.93 16 Total: -1.00 -64.16 337.87 5.60 -58.56 By element: Atomic # 1 Polarization: 18.94 SS G_CDS: 0.37 Total: 19.31 kcal Atomic # 6 Polarization: -20.53 SS G_CDS: 3.78 Total: -16.74 kcal Atomic # 7 Polarization: -79.66 SS G_CDS: -1.85 Total: -81.51 kcal Atomic # 8 Polarization: -8.91 SS G_CDS: -0.76 Total: -9.67 kcal Atomic # 9 Polarization: -18.54 SS G_CDS: 2.03 Total: -16.51 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Total: -64.16 5.60 -58.56 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255155250.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.113 kcal (2) G-P(sol) polarization free energy of solvation -64.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds