Wall clock time and date at job start Tue Mar 31 2020 12:58:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47118 * 2 1 4 4 H 1.09002 * 109.47300 * 54.79067 * 3 2 1 5 5 C 1.50700 * 109.47015 * 174.78952 * 3 2 1 6 6 H 1.08008 * 119.99857 * 119.71883 * 5 3 2 7 7 C 1.37877 * 120.00173 * 299.99877 * 5 3 2 8 8 N 1.31509 * 119.99898 * 359.97438 * 7 5 3 9 9 Si 1.86805 * 119.99909 * 180.02562 * 7 5 3 10 10 H 1.48490 * 109.47255 * 59.99692 * 9 7 5 11 11 H 1.48504 * 109.46787 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.46835 * 299.99668 * 9 7 5 13 13 N 1.46900 * 109.47001 * 294.78606 * 3 2 1 14 14 C 1.46900 * 111.00010 * 154.54023 * 13 3 2 15 15 C 1.50699 * 109.47087 * 185.19022 * 14 13 3 16 16 C 1.38746 * 120.02885 * 90.00603 * 15 14 13 17 17 O 1.35907 * 120.05585 * 359.97438 * 16 15 14 18 18 C 1.42901 * 116.99837 * 180.02562 * 17 16 15 19 19 C 1.38715 * 119.89155 * 180.02562 * 16 15 14 20 20 C 1.38163 * 119.93918 * 359.97438 * 19 16 15 21 21 C 1.38244 * 120.06149 * 359.97438 * 20 19 16 22 22 C 1.38118 * 120.02496 * 269.72688 * 15 14 13 23 23 C 1.50694 * 119.97769 * 359.97438 * 22 15 14 24 24 F 1.39900 * 109.47599 * 179.97438 * 23 22 15 25 25 F 1.39904 * 109.47310 * 299.99953 * 23 22 15 26 26 F 1.39903 * 109.47142 * 59.99804 * 23 22 15 27 27 H 1.08998 * 109.47478 * 306.10562 * 1 2 3 28 28 H 1.08997 * 109.46847 * 66.10421 * 1 2 3 29 29 H 1.08999 * 109.47339 * 186.10660 * 1 2 3 30 30 H 1.08997 * 109.47201 * 239.99450 * 2 1 3 31 31 H 1.09005 * 109.47029 * 119.99767 * 2 1 3 32 32 H 0.96996 * 120.00226 * 179.97438 * 8 7 5 33 33 H 1.00901 * 110.99885 * 30.59447 * 13 3 2 34 34 H 1.09004 * 109.47046 * 305.19391 * 14 13 3 35 35 H 1.09006 * 109.46914 * 65.18900 * 14 13 3 36 36 H 1.09002 * 109.46979 * 299.99687 * 18 17 16 37 37 H 1.08995 * 109.47130 * 60.00205 * 18 17 16 38 38 H 1.08997 * 109.46715 * 179.97438 * 18 17 16 39 39 H 1.07998 * 120.02939 * 179.97438 * 19 16 15 40 40 H 1.08001 * 119.96964 * 179.97438 * 20 19 16 41 41 H 1.07995 * 119.94707 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6025 1.9826 0.8397 5 6 3.5414 1.4444 0.1290 6 1 4.1496 1.8840 -0.6478 7 6 4.1390 0.8799 1.2359 8 7 3.3987 0.3402 2.1794 9 14 6.0002 0.8829 1.3961 10 1 6.4947 2.2831 1.3964 11 1 6.3886 0.2199 2.6669 12 1 6.5966 0.1475 0.2522 13 7 1.6558 2.0976 -1.2574 14 6 1.5657 3.5538 -1.0862 15 6 1.0478 4.1779 -2.3563 16 6 -0.3168 4.3487 -2.5398 17 8 -1.1881 3.9531 -1.5748 18 6 -2.5786 4.1593 -1.8321 19 6 -0.7904 4.9230 -3.7103 20 6 0.0974 5.3239 -4.6901 21 6 1.4567 5.1536 -4.5045 22 6 1.9316 4.5856 -3.3363 23 6 3.4143 4.4067 -3.1349 24 9 4.0989 4.8906 -4.2548 25 9 3.8193 5.1149 -1.9983 26 9 3.7012 3.0481 -2.9646 27 1 -0.3634 0.6056 0.8302 28 1 -0.3633 0.4163 -0.9396 29 1 -0.3634 -1.0218 0.1093 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 3.8190 -0.0573 2.9579 33 1 0.7891 1.7210 -1.6113 34 1 0.8854 3.7818 -0.2656 35 1 2.5539 3.9550 -0.8609 36 1 -2.7671 5.2228 -1.9787 37 1 -2.8671 3.6119 -2.7294 38 1 -3.1621 3.7999 -0.9844 39 1 -1.8522 5.0566 -3.8556 40 1 -0.2708 5.7707 -5.6017 41 1 2.1491 5.4680 -5.2713 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255156656.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:58:50 Heat of formation + Delta-G solvation = -160.267327 kcal Electronic energy + Delta-G solvation = -28309.311397 eV Core-core repulsion = 23967.752129 eV Total energy + Delta-G solvation = -4341.559268 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.134 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.69233 -47.30211 -46.93654 -40.39176 -37.67819 -36.23379 -33.25412 -31.72367 -31.05730 -29.91412 -27.53870 -26.76278 -25.62757 -24.36621 -22.56004 -21.75169 -21.10600 -19.47356 -18.52549 -18.09539 -17.89549 -16.56808 -16.31199 -16.06189 -15.91087 -15.81617 -14.75725 -14.39402 -14.08640 -14.04486 -13.91076 -13.74222 -13.53954 -13.32483 -13.21448 -13.13602 -12.90276 -12.81338 -12.48972 -12.05429 -12.02875 -11.91016 -11.60458 -11.28766 -11.19235 -11.08441 -10.76214 -10.64587 -10.53564 -9.84973 -9.65027 -9.56311 -9.15925 -8.95434 -8.26221 -8.23995 -7.12863 -5.86639 -3.89374 0.92333 1.27751 2.90025 3.30863 3.42593 3.45276 3.45990 3.50612 4.10245 4.46364 4.54699 4.63652 4.78070 4.90638 4.93123 5.00152 5.00677 5.21274 5.34963 5.36696 5.41847 5.60221 5.76443 5.90064 6.11967 6.19851 6.23602 6.23753 6.39669 6.48033 6.50039 6.62288 6.92112 7.16434 7.25414 7.27807 7.56082 7.86048 8.03416 8.35728 8.48247 8.84489 9.19305 9.75033 11.18954 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.012541 B = 0.005852 C = 0.004285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2232.187088 B = 4783.385640 C = 6532.550684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.124 4.124 3 C 0.221 3.779 4 H 0.002 0.998 5 C -0.488 4.488 6 H 0.064 0.936 7 C 0.055 3.945 8 N -0.899 5.899 9 Si 0.892 3.108 10 H -0.278 1.278 11 H -0.290 1.290 12 H -0.277 1.277 13 N -0.670 5.670 14 C 0.092 3.908 15 C -0.050 4.050 16 C 0.127 3.873 17 O -0.305 6.305 18 C 0.027 3.973 19 C -0.183 4.183 20 C -0.091 4.091 21 C -0.115 4.115 22 C -0.129 4.129 23 C 0.507 3.493 24 F -0.188 7.188 25 F -0.175 7.175 26 F -0.143 7.143 27 H 0.042 0.958 28 H 0.034 0.966 29 H 0.035 0.965 30 H 0.041 0.959 31 H 0.099 0.901 32 H 0.258 0.742 33 H 0.317 0.683 34 H 0.040 0.960 35 H 0.089 0.911 36 H 0.054 0.946 37 H 0.055 0.945 38 H 0.101 0.899 39 H 0.133 0.867 40 H 0.132 0.868 41 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.667 10.122 -12.331 19.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.163 4.163 3 C 0.114 3.886 4 H 0.020 0.980 5 C -0.527 4.527 6 H 0.082 0.918 7 C -0.145 4.145 8 N -0.539 5.539 9 Si 0.720 3.280 10 H -0.204 1.204 11 H -0.216 1.216 12 H -0.203 1.203 13 N -0.301 5.301 14 C -0.037 4.037 15 C -0.051 4.051 16 C 0.081 3.919 17 O -0.217 6.217 18 C -0.068 4.068 19 C -0.202 4.202 20 C -0.110 4.110 21 C -0.134 4.134 22 C -0.131 4.131 23 C 0.452 3.548 24 F -0.170 7.170 25 F -0.157 7.157 26 F -0.124 7.124 27 H 0.061 0.939 28 H 0.053 0.947 29 H 0.054 0.946 30 H 0.059 0.941 31 H 0.118 0.882 32 H 0.068 0.932 33 H 0.134 0.866 34 H 0.058 0.942 35 H 0.107 0.893 36 H 0.072 0.928 37 H 0.074 0.926 38 H 0.119 0.881 39 H 0.150 0.850 40 H 0.150 0.850 41 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -9.911 9.935 -12.164 18.571 hybrid contribution 0.101 0.128 0.483 0.510 sum -9.809 10.063 -11.680 18.273 Atomic orbital electron populations 1.21861 0.99660 0.99477 0.99543 1.21755 0.91153 1.00317 1.03042 1.19173 0.95476 0.89882 0.84068 0.97993 1.21225 0.91191 1.36104 1.04189 0.91813 1.24932 0.97900 0.95771 0.95901 1.69862 1.34662 1.39703 1.09688 0.86657 0.86140 0.78172 0.77024 1.20405 1.21561 1.20316 1.60894 1.35625 1.00158 1.33414 1.20984 1.01087 0.91240 0.90342 1.19246 0.89703 0.98556 0.97606 1.18693 0.89365 0.95557 0.88301 1.86182 1.16606 1.78326 1.40624 1.23081 0.79528 1.01089 1.03098 1.21366 1.00679 1.03735 0.94390 1.20808 0.92251 0.99187 0.98717 1.20887 0.96363 0.99706 0.96401 1.19695 0.91451 1.04940 0.97013 1.18158 0.87414 0.75660 0.73534 1.93114 1.82231 1.88444 1.53192 1.93180 1.91953 1.78911 1.51614 1.93409 1.94236 1.29954 1.94765 0.93923 0.94668 0.94576 0.94067 0.88241 0.93183 0.86560 0.94201 0.89290 0.92768 0.92625 0.88068 0.84964 0.85006 0.84583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.94 9.63 37.16 0.36 -2.58 16 2 C -0.12 -2.99 5.36 -26.73 -0.14 -3.13 16 3 C 0.22 5.61 2.03 -68.87 -0.14 5.47 16 4 H 0.00 0.07 7.71 -51.93 -0.40 -0.33 16 5 C -0.49 -13.76 8.69 -34.44 -0.30 -14.06 16 6 H 0.06 1.84 7.65 -52.48 -0.40 1.44 16 7 C 0.05 1.55 5.29 -17.82 -0.09 1.46 16 8 N -0.90 -26.01 11.29 55.43 0.63 -25.39 16 9 Si 0.89 22.22 29.54 -169.99 -5.02 17.20 16 10 H -0.28 -6.92 7.11 56.52 0.40 -6.51 16 11 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 12 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 13 N -0.67 -14.69 5.61 -109.22 -0.61 -15.31 16 14 C 0.09 1.86 4.57 -4.98 -0.02 1.84 16 15 C -0.05 -0.83 5.31 -104.48 -0.56 -1.39 16 16 C 0.13 1.81 6.66 -39.22 -0.26 1.55 16 17 O -0.30 -4.26 9.54 -19.45 -0.19 -4.44 16 18 C 0.03 0.24 9.81 101.05 0.99 1.23 16 19 C -0.18 -2.02 9.04 -39.43 -0.36 -2.38 16 20 C -0.09 -0.95 10.04 -39.61 -0.40 -1.35 16 21 C -0.12 -1.43 9.43 -39.56 -0.37 -1.81 16 22 C -0.13 -2.03 5.37 -104.65 -0.56 -2.59 16 23 C 0.51 8.80 2.81 36.00 0.10 8.91 16 24 F -0.19 -2.91 15.97 2.25 0.04 -2.88 16 25 F -0.18 -3.24 15.34 2.25 0.03 -3.21 16 26 F -0.14 -2.92 15.65 2.25 0.04 -2.89 16 27 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.03 0.64 6.65 -51.93 -0.35 0.29 16 29 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.10 2.68 5.95 -51.93 -0.31 2.37 16 32 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 33 H 0.32 6.55 6.49 -39.29 -0.26 6.29 16 34 H 0.04 0.83 7.32 -51.93 -0.38 0.45 16 35 H 0.09 1.95 5.47 -51.93 -0.28 1.67 16 36 H 0.05 0.39 7.66 -51.93 -0.40 -0.01 16 37 H 0.06 0.41 7.66 -51.93 -0.40 0.02 16 38 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.13 1.06 6.30 -52.49 -0.33 0.73 16 40 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 41 H 0.14 1.43 7.15 -52.49 -0.38 1.06 16 LS Contribution 343.24 15.07 5.17 5.17 Total: -1.00 -30.59 343.24 -6.79 -37.39 By element: Atomic # 1 Polarization: 8.30 SS G_CDS: -5.13 Total: 3.17 kcal Atomic # 6 Polarization: -7.07 SS G_CDS: -1.75 Total: -8.82 kcal Atomic # 7 Polarization: -40.71 SS G_CDS: 0.01 Total: -40.69 kcal Atomic # 8 Polarization: -4.26 SS G_CDS: -0.19 Total: -4.44 kcal Atomic # 9 Polarization: -9.08 SS G_CDS: 0.11 Total: -8.97 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -30.59 -6.79 -37.39 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255156656.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.881 kcal (2) G-P(sol) polarization free energy of solvation -30.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds