Wall clock time and date at job start Tue Mar 31 2020 12:58:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47118 * 2 1 4 4 H 1.09002 * 109.47300 * 54.79067 * 3 2 1 5 5 C 1.50700 * 109.47015 * 174.78952 * 3 2 1 6 6 H 1.08008 * 119.99857 * 119.71883 * 5 3 2 7 7 C 1.37877 * 120.00173 * 299.99877 * 5 3 2 8 8 N 1.31509 * 119.99898 * 359.97438 * 7 5 3 9 9 Si 1.86805 * 119.99909 * 180.02562 * 7 5 3 10 10 H 1.48490 * 109.47255 * 59.99692 * 9 7 5 11 11 H 1.48504 * 109.46787 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.46835 * 299.99668 * 9 7 5 13 13 N 1.46900 * 109.47001 * 294.78606 * 3 2 1 14 14 C 1.46900 * 111.00010 * 154.54023 * 13 3 2 15 15 C 1.50699 * 109.47087 * 185.19022 * 14 13 3 16 16 C 1.38746 * 120.02885 * 90.00603 * 15 14 13 17 17 O 1.35907 * 120.05585 * 359.97438 * 16 15 14 18 18 C 1.42901 * 116.99837 * 180.02562 * 17 16 15 19 19 C 1.38715 * 119.89155 * 180.02562 * 16 15 14 20 20 C 1.38163 * 119.93918 * 359.97438 * 19 16 15 21 21 C 1.38244 * 120.06149 * 359.97438 * 20 19 16 22 22 C 1.38118 * 120.02496 * 269.72688 * 15 14 13 23 23 C 1.50694 * 119.97769 * 359.97438 * 22 15 14 24 24 F 1.39900 * 109.47599 * 179.97438 * 23 22 15 25 25 F 1.39904 * 109.47310 * 299.99953 * 23 22 15 26 26 F 1.39903 * 109.47142 * 59.99804 * 23 22 15 27 27 H 1.08998 * 109.47478 * 306.10562 * 1 2 3 28 28 H 1.08997 * 109.46847 * 66.10421 * 1 2 3 29 29 H 1.08999 * 109.47339 * 186.10660 * 1 2 3 30 30 H 1.08997 * 109.47201 * 239.99450 * 2 1 3 31 31 H 1.09005 * 109.47029 * 119.99767 * 2 1 3 32 32 H 0.96996 * 120.00226 * 179.97438 * 8 7 5 33 33 H 1.00901 * 110.99885 * 30.59447 * 13 3 2 34 34 H 1.09004 * 109.47046 * 305.19391 * 14 13 3 35 35 H 1.09006 * 109.46914 * 65.18900 * 14 13 3 36 36 H 1.09002 * 109.46979 * 299.99687 * 18 17 16 37 37 H 1.08995 * 109.47130 * 60.00205 * 18 17 16 38 38 H 1.08997 * 109.46715 * 179.97438 * 18 17 16 39 39 H 1.07998 * 120.02939 * 179.97438 * 19 16 15 40 40 H 1.08001 * 119.96964 * 179.97438 * 20 19 16 41 41 H 1.07995 * 119.94707 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6025 1.9826 0.8397 5 6 3.5414 1.4444 0.1290 6 1 4.1496 1.8840 -0.6478 7 6 4.1390 0.8799 1.2359 8 7 3.3987 0.3402 2.1794 9 14 6.0002 0.8829 1.3961 10 1 6.4947 2.2831 1.3964 11 1 6.3886 0.2199 2.6669 12 1 6.5966 0.1475 0.2522 13 7 1.6558 2.0976 -1.2574 14 6 1.5657 3.5538 -1.0862 15 6 1.0478 4.1779 -2.3563 16 6 -0.3168 4.3487 -2.5398 17 8 -1.1881 3.9531 -1.5748 18 6 -2.5786 4.1593 -1.8321 19 6 -0.7904 4.9230 -3.7103 20 6 0.0974 5.3239 -4.6901 21 6 1.4567 5.1536 -4.5045 22 6 1.9316 4.5856 -3.3363 23 6 3.4143 4.4067 -3.1349 24 9 4.0989 4.8906 -4.2548 25 9 3.8193 5.1149 -1.9983 26 9 3.7012 3.0481 -2.9646 27 1 -0.3634 0.6056 0.8302 28 1 -0.3633 0.4163 -0.9396 29 1 -0.3634 -1.0218 0.1093 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 3.8190 -0.0573 2.9579 33 1 0.7891 1.7210 -1.6113 34 1 0.8854 3.7818 -0.2656 35 1 2.5539 3.9550 -0.8609 36 1 -2.7671 5.2228 -1.9787 37 1 -2.8671 3.6119 -2.7294 38 1 -3.1621 3.7999 -0.9844 39 1 -1.8522 5.0566 -3.8556 40 1 -0.2708 5.7707 -5.6017 41 1 2.1491 5.4680 -5.2713 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255156656.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:58:49 Heat of formation + Delta-G solvation = -179.033672 kcal Electronic energy + Delta-G solvation = -28310.125167 eV Core-core repulsion = 23967.752129 eV Total energy + Delta-G solvation = -4342.373038 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.134 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -51.08291 -48.65785 -48.41869 -41.39180 -38.70392 -38.00631 -34.88451 -33.56064 -32.28680 -31.24120 -28.65502 -28.26837 -27.01536 -25.85266 -24.36515 -22.83637 -22.35180 -21.43727 -19.61480 -19.42668 -19.31454 -18.35870 -17.64015 -17.20332 -17.05784 -16.84055 -16.59480 -15.90669 -15.76895 -15.37329 -15.32678 -15.07401 -14.92736 -14.69919 -14.64471 -14.59635 -14.23738 -14.09702 -13.98114 -13.53500 -13.48334 -13.11182 -13.00562 -12.85640 -12.69526 -12.54881 -12.44873 -12.08304 -11.98999 -11.87407 -11.53252 -11.37595 -11.04173 -10.41191 -10.14886 -9.29551 -8.97179 -8.04883 -6.15151 -0.10536 0.29431 1.39262 1.40998 1.48904 1.70455 2.33253 2.43660 2.47911 2.85558 3.19635 3.21562 3.48936 3.57845 3.85182 3.93557 4.00703 4.19311 4.40459 4.43244 4.44225 4.48225 4.57115 4.57234 4.63448 4.72757 4.77013 4.90213 5.09951 5.18354 5.22261 5.28135 5.28652 5.38332 5.59164 5.60300 5.77165 5.90612 6.35797 6.39837 6.48095 6.97414 6.98152 7.52721 8.98435 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.012541 B = 0.005852 C = 0.004285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2232.187088 B = 4783.385640 C = 6532.550684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.118 4.118 3 C 0.229 3.771 4 H -0.034 1.034 5 C -0.506 4.506 6 H 0.048 0.952 7 C 0.011 3.989 8 N -0.919 5.919 9 Si 0.948 3.052 10 H -0.278 1.278 11 H -0.280 1.280 12 H -0.274 1.274 13 N -0.665 5.665 14 C 0.105 3.895 15 C -0.086 4.086 16 C 0.121 3.879 17 O -0.336 6.336 18 C 0.017 3.983 19 C -0.169 4.169 20 C -0.071 4.071 21 C -0.115 4.115 22 C -0.143 4.143 23 C 0.501 3.499 24 F -0.177 7.177 25 F -0.189 7.189 26 F -0.168 7.168 27 H 0.035 0.965 28 H 0.053 0.947 29 H 0.058 0.942 30 H 0.035 0.965 31 H 0.069 0.931 32 H 0.260 0.740 33 H 0.325 0.675 34 H 0.023 0.977 35 H 0.060 0.940 36 H 0.074 0.926 37 H 0.074 0.926 38 H 0.109 0.891 39 H 0.172 0.828 40 H 0.180 0.820 41 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.700 11.159 -14.897 22.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.157 4.157 3 C 0.121 3.879 4 H -0.016 1.016 5 C -0.545 4.545 6 H 0.066 0.934 7 C -0.187 4.187 8 N -0.560 5.560 9 Si 0.774 3.226 10 H -0.204 1.204 11 H -0.205 1.205 12 H -0.199 1.199 13 N -0.297 5.297 14 C -0.024 4.024 15 C -0.087 4.087 16 C 0.075 3.925 17 O -0.250 6.250 18 C -0.077 4.077 19 C -0.188 4.188 20 C -0.088 4.088 21 C -0.134 4.134 22 C -0.145 4.145 23 C 0.447 3.553 24 F -0.158 7.158 25 F -0.170 7.170 26 F -0.150 7.150 27 H 0.054 0.946 28 H 0.072 0.928 29 H 0.077 0.923 30 H 0.054 0.946 31 H 0.088 0.912 32 H 0.069 0.931 33 H 0.143 0.857 34 H 0.042 0.958 35 H 0.078 0.922 36 H 0.093 0.907 37 H 0.092 0.908 38 H 0.127 0.873 39 H 0.189 0.811 40 H 0.197 0.803 41 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -11.961 10.979 -14.743 21.931 hybrid contribution 0.662 -0.115 1.218 1.391 sum -11.299 10.864 -13.525 20.703 Atomic orbital electron populations 1.21697 0.96198 1.00980 1.00285 1.21568 0.94249 0.98728 1.01171 1.18927 0.93985 0.90669 0.84356 1.01643 1.21446 0.92768 1.36211 1.04083 0.93372 1.25609 1.01916 0.95492 0.95634 1.69982 1.36077 1.39990 1.09924 0.85772 0.81389 0.78096 0.77342 1.20382 1.20467 1.19917 1.60737 1.36137 1.01505 1.31303 1.20679 0.99262 0.89990 0.92506 1.18950 0.91548 1.01546 0.96650 1.18791 0.88374 0.95794 0.89543 1.86147 1.18833 1.78591 1.41399 1.23418 0.76971 1.02875 1.04471 1.21808 1.02847 1.01472 0.92627 1.21369 0.90893 0.96818 0.99765 1.21214 0.98089 0.98809 0.95249 1.19654 0.89607 1.06736 0.98483 1.18514 0.89017 0.74440 0.73372 1.93119 1.82258 1.88128 1.52337 1.93144 1.92267 1.79021 1.52598 1.93344 1.94588 1.32054 1.94964 0.94605 0.92761 0.92299 0.94628 0.91230 0.93104 0.85661 0.95843 0.92181 0.90699 0.90752 0.87256 0.81088 0.80317 0.82624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.28 9.63 71.98 0.69 -4.59 16 2 C -0.12 -5.87 5.36 30.59 0.16 -5.71 16 3 C 0.23 12.21 2.03 44.17 0.09 12.30 16 4 H -0.03 -2.02 7.71 -2.39 -0.02 -2.04 16 5 C -0.51 -29.93 8.69 25.60 0.22 -29.70 16 6 H 0.05 2.94 7.65 -2.91 -0.02 2.91 16 7 C 0.01 0.66 5.29 84.66 0.45 1.11 16 8 N -0.92 -54.91 11.29 21.45 0.24 -54.66 16 9 Si 0.95 46.78 29.54 68.60 2.03 48.81 16 10 H -0.28 -13.63 7.11 99.48 0.71 -12.92 16 11 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 12 H -0.27 -13.28 7.11 99.48 0.71 -12.57 16 13 N -0.67 -30.51 5.61 -499.46 -2.80 -33.31 16 14 C 0.10 4.47 4.57 85.56 0.39 4.86 16 15 C -0.09 -2.90 5.31 -19.77 -0.11 -3.00 16 16 C 0.12 3.25 6.66 22.51 0.15 3.40 16 17 O -0.34 -8.98 9.54 -92.51 -0.88 -9.86 16 18 C 0.02 0.24 9.81 113.37 1.11 1.35 16 19 C -0.17 -2.98 9.04 22.37 0.20 -2.77 16 20 C -0.07 -1.11 10.04 22.25 0.22 -0.88 16 21 C -0.12 -2.52 9.43 22.29 0.21 -2.31 16 22 C -0.14 -4.44 5.37 -19.88 -0.11 -4.54 16 23 C 0.50 17.91 2.81 71.23 0.20 18.11 16 24 F -0.18 -5.44 15.97 44.97 0.72 -4.72 16 25 F -0.19 -7.40 15.34 44.97 0.69 -6.71 16 26 F -0.17 -7.24 15.65 44.97 0.70 -6.54 16 27 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 28 H 0.05 1.91 6.65 -2.39 -0.02 1.90 16 29 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 30 H 0.03 1.75 8.14 -2.39 -0.02 1.73 16 31 H 0.07 3.88 5.95 -2.38 -0.01 3.86 16 32 H 0.26 14.80 8.31 -92.71 -0.77 14.03 16 33 H 0.33 13.72 6.49 -89.69 -0.58 13.13 16 34 H 0.02 1.05 7.32 -2.39 -0.02 1.03 16 35 H 0.06 2.86 5.47 -2.38 -0.01 2.85 16 36 H 0.07 0.77 7.66 -2.39 -0.02 0.76 16 37 H 0.07 0.80 7.66 -2.39 -0.02 0.78 16 38 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 39 H 0.17 1.67 6.30 -2.91 -0.02 1.65 16 40 H 0.18 1.21 8.06 -2.91 -0.02 1.19 16 41 H 0.16 2.73 7.15 -2.91 -0.02 2.71 16 Total: -1.00 -71.17 343.24 5.08 -66.09 By element: Atomic # 1 Polarization: 12.79 SS G_CDS: 0.49 Total: 13.28 kcal Atomic # 6 Polarization: -16.27 SS G_CDS: 3.89 Total: -12.38 kcal Atomic # 7 Polarization: -85.41 SS G_CDS: -2.56 Total: -87.98 kcal Atomic # 8 Polarization: -8.98 SS G_CDS: -0.88 Total: -9.86 kcal Atomic # 9 Polarization: -20.07 SS G_CDS: 2.11 Total: -17.96 kcal Atomic # 14 Polarization: 46.78 SS G_CDS: 2.03 Total: 48.81 kcal Total: -71.17 5.08 -66.09 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255156656.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.940 kcal (2) G-P(sol) polarization free energy of solvation -71.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -184.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds