Wall clock time and date at job start Tue Mar 31 2020 12:58:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.46836 * 2 1 4 4 H 1.08998 * 109.47813 * 304.62788 * 3 2 1 5 5 C 1.50698 * 109.47037 * 184.62185 * 3 2 1 6 6 H 1.07994 * 120.00519 * 240.00111 * 5 3 2 7 7 C 1.37877 * 119.99516 * 59.73247 * 5 3 2 8 8 N 1.31511 * 120.00471 * 0.27112 * 7 5 3 9 9 Si 1.86809 * 120.00025 * 180.27403 * 7 5 3 10 10 H 1.48498 * 109.46823 * 59.99568 * 9 7 5 11 11 H 1.48491 * 109.47320 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.47217 * 300.00041 * 9 7 5 13 13 N 1.46911 * 109.46912 * 64.62903 * 3 2 1 14 14 C 1.46902 * 110.99766 * 203.34464 * 13 3 2 15 15 C 1.50700 * 109.47132 * 184.92009 * 14 13 3 16 16 C 1.38754 * 120.02448 * 89.99965 * 15 14 13 17 17 O 1.35895 * 120.05994 * 359.97438 * 16 15 14 18 18 C 1.42897 * 117.00175 * 179.97438 * 17 16 15 19 19 C 1.38715 * 119.88481 * 180.02562 * 16 15 14 20 20 C 1.38167 * 119.94492 * 359.97438 * 19 16 15 21 21 C 1.38244 * 120.05506 * 359.97438 * 20 19 16 22 22 C 1.38122 * 120.02931 * 269.73031 * 15 14 13 23 23 C 1.50700 * 119.96953 * 359.97438 * 22 15 14 24 24 F 1.39901 * 109.46832 * 180.02562 * 23 22 15 25 25 F 1.39895 * 109.47556 * 300.00152 * 23 22 15 26 26 F 1.39901 * 109.47106 * 60.00620 * 23 22 15 27 27 H 1.09004 * 109.47031 * 54.67153 * 1 2 3 28 28 H 1.08999 * 109.47126 * 174.66562 * 1 2 3 29 29 H 1.08996 * 109.47364 * 294.66474 * 1 2 3 30 30 H 1.09000 * 109.47184 * 240.00391 * 2 1 3 31 31 H 1.08994 * 109.47291 * 120.00182 * 2 1 3 32 32 H 0.96998 * 120.00449 * 180.02562 * 8 7 5 33 33 H 1.00895 * 110.99556 * 79.39465 * 13 3 2 34 34 H 1.08997 * 109.47351 * 304.92036 * 14 13 3 35 35 H 1.09001 * 109.47126 * 64.92155 * 14 13 3 36 36 H 1.08995 * 109.47617 * 300.00800 * 18 17 16 37 37 H 1.09007 * 109.46835 * 60.00662 * 18 17 16 38 38 H 1.09005 * 109.47292 * 180.02562 * 18 17 16 39 39 H 1.08001 * 120.02667 * 179.97438 * 19 16 15 40 40 H 1.07995 * 119.96884 * 180.02562 * 20 19 16 41 41 H 1.08002 * 119.94240 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6105 1.9798 -0.8456 5 6 3.5426 1.4441 -0.1145 6 1 4.1430 1.8903 0.6643 7 6 4.1509 0.8708 -1.2110 8 7 3.4198 0.3274 -2.1595 9 14 6.0139 0.8659 -1.3494 10 1 6.5940 0.1351 -0.1942 11 1 6.4147 0.1941 -2.6115 12 1 6.5137 2.2643 -1.3520 13 7 1.6436 2.1019 1.2515 14 6 1.6038 3.5613 1.0879 15 6 1.3128 4.2081 2.4175 16 6 2.3565 4.5640 3.2597 17 8 3.6422 4.3293 2.8871 18 6 4.6654 4.7223 3.8039 19 6 2.0854 5.1587 4.4832 20 6 0.7774 5.3958 4.8600 21 6 -0.2606 5.0412 4.0186 22 6 0.0072 4.4523 2.7964 23 6 -1.1265 4.0721 1.8792 24 9 -2.3443 4.4161 2.4758 25 9 -0.9932 4.7545 0.6653 26 9 -1.0945 2.6932 1.6451 27 1 -0.3633 0.5943 -0.8385 28 1 -0.3633 -1.0232 -0.0955 29 1 -0.3634 0.4288 0.9339 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 3.8478 -0.0762 -2.9307 33 1 2.2570 1.8395 2.0084 34 1 2.5668 3.9116 0.7164 35 1 0.8217 3.8259 0.3762 36 1 4.6028 5.7961 3.9799 37 1 4.5322 4.1912 4.7465 38 1 5.6418 4.4794 3.3846 39 1 2.8960 5.4362 5.1407 40 1 0.5658 5.8592 5.8123 41 1 -1.2824 5.2278 4.3148 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255156658.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:58:53 Heat of formation + Delta-G solvation = -164.437885 kcal Electronic energy + Delta-G solvation = -28281.052627 eV Core-core repulsion = 23939.312510 eV Total energy + Delta-G solvation = -4341.740117 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.134 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.82344 -47.41763 -47.09977 -40.33368 -37.61334 -36.09732 -33.25125 -31.67118 -31.02891 -29.94035 -27.46276 -26.73184 -25.58076 -24.27564 -22.48540 -21.73496 -21.09019 -19.42108 -18.51793 -18.19158 -18.04594 -16.62108 -16.56639 -16.13339 -15.76161 -15.72858 -14.78909 -14.28984 -14.15498 -13.97856 -13.90156 -13.79100 -13.60211 -13.38658 -13.31741 -13.17068 -12.89700 -12.78701 -12.47068 -12.01822 -11.88897 -11.76991 -11.35239 -11.21040 -11.18968 -11.10079 -10.86435 -10.65099 -10.53581 -10.08208 -9.51262 -9.48422 -9.10689 -8.98163 -8.31170 -8.21638 -7.16482 -5.92633 -4.04965 0.93851 1.31327 2.87018 3.30910 3.33885 3.36233 3.38053 3.48579 4.01730 4.39110 4.44242 4.66094 4.77450 4.82939 4.99294 5.01901 5.10788 5.25324 5.32560 5.37991 5.47225 5.64526 5.80172 5.94363 6.16035 6.22124 6.37249 6.50154 6.58548 6.62216 6.67457 6.83961 7.22333 7.30599 7.35728 7.51167 7.67237 7.85381 8.15203 8.22430 8.38587 8.71523 9.07312 9.61784 11.07350 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.012676 B = 0.005614 C = 0.004193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2208.323746 B = 4986.694118 C = 6676.336526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.104 4.104 3 C 0.217 3.783 4 H 0.032 0.968 5 C -0.542 4.542 6 H 0.055 0.945 7 C 0.067 3.933 8 N -0.886 5.886 9 Si 0.888 3.112 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.279 1.279 13 N -0.672 5.672 14 C 0.090 3.910 15 C -0.048 4.048 16 C 0.131 3.869 17 O -0.298 6.298 18 C 0.027 3.973 19 C -0.184 4.184 20 C -0.091 4.091 21 C -0.117 4.117 22 C -0.133 4.133 23 C 0.509 3.491 24 F -0.187 7.187 25 F -0.177 7.177 26 F -0.148 7.148 27 H 0.036 0.964 28 H 0.022 0.978 29 H 0.050 0.950 30 H 0.090 0.910 31 H 0.029 0.971 32 H 0.261 0.739 33 H 0.327 0.673 34 H 0.055 0.945 35 H 0.075 0.925 36 H 0.053 0.947 37 H 0.055 0.945 38 H 0.102 0.898 39 H 0.132 0.868 40 H 0.131 0.869 41 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.700 10.667 13.740 18.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.142 4.142 3 C 0.109 3.891 4 H 0.050 0.950 5 C -0.581 4.581 6 H 0.073 0.927 7 C -0.135 4.135 8 N -0.524 5.524 9 Si 0.716 3.284 10 H -0.204 1.204 11 H -0.213 1.213 12 H -0.205 1.205 13 N -0.301 5.301 14 C -0.039 4.039 15 C -0.050 4.050 16 C 0.085 3.915 17 O -0.210 6.210 18 C -0.068 4.068 19 C -0.203 4.203 20 C -0.110 4.110 21 C -0.136 4.136 22 C -0.135 4.135 23 C 0.454 3.546 24 F -0.168 7.168 25 F -0.159 7.159 26 F -0.129 7.129 27 H 0.055 0.945 28 H 0.041 0.959 29 H 0.069 0.931 30 H 0.108 0.892 31 H 0.048 0.952 32 H 0.071 0.929 33 H 0.143 0.857 34 H 0.073 0.927 35 H 0.094 0.906 36 H 0.071 0.929 37 H 0.073 0.927 38 H 0.120 0.880 39 H 0.150 0.850 40 H 0.149 0.851 41 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -5.311 10.375 13.199 17.608 hybrid contribution 2.018 0.278 -0.007 2.037 sum -3.293 10.653 13.192 17.273 Atomic orbital electron populations 1.21701 0.98863 0.98078 1.00690 1.21469 0.92188 0.99030 1.01552 1.19146 0.92703 0.91139 0.86082 0.94986 1.21862 0.92761 1.37689 1.05784 0.92664 1.24921 0.97720 0.95139 0.95731 1.69869 1.34807 1.38166 1.09594 0.86738 0.86401 0.78055 0.77224 1.20421 1.21349 1.20478 1.61131 1.56565 1.02833 1.09578 1.20916 1.01765 0.90979 0.90265 1.19239 0.89456 0.98443 0.97842 1.18727 0.84593 0.95573 0.92655 1.86256 1.11995 1.78126 1.44615 1.23087 0.90530 0.99527 0.93642 1.21390 0.98326 1.03972 0.96573 1.20796 0.91500 0.99297 0.99379 1.20846 1.00371 0.99452 0.92889 1.19638 0.92239 1.05238 0.96383 1.18163 0.81112 0.76212 0.79077 1.93121 1.47712 1.92310 1.83684 1.93169 1.95594 1.80088 1.47008 1.93360 1.96247 1.28818 1.94510 0.94518 0.95902 0.93096 0.89180 0.95233 0.92922 0.85669 0.92718 0.90637 0.92884 0.92669 0.88002 0.84978 0.85078 0.84701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.94 9.73 37.16 0.36 -2.58 16 2 C -0.10 -2.55 5.45 -26.73 -0.15 -2.69 16 3 C 0.22 5.45 1.97 -68.86 -0.14 5.31 16 4 H 0.03 0.90 7.88 -51.93 -0.41 0.49 16 5 C -0.54 -14.67 8.24 -34.44 -0.28 -14.96 16 6 H 0.06 1.50 7.76 -52.49 -0.41 1.09 16 7 C 0.07 1.85 5.29 -17.82 -0.09 1.76 16 8 N -0.89 -25.28 11.29 55.43 0.63 -24.66 16 9 Si 0.89 21.29 29.54 -169.99 -5.02 16.26 16 10 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 12 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 13 N -0.67 -14.46 5.09 -109.22 -0.56 -15.01 16 14 C 0.09 1.78 4.52 -4.97 -0.02 1.76 16 15 C -0.05 -0.81 5.32 -104.47 -0.56 -1.36 16 16 C 0.13 1.94 6.66 -39.21 -0.26 1.68 16 17 O -0.30 -4.59 9.54 -19.41 -0.19 -4.78 16 18 C 0.03 0.28 9.81 101.05 0.99 1.27 16 19 C -0.18 -2.11 9.04 -39.43 -0.36 -2.47 16 20 C -0.09 -0.96 10.04 -39.61 -0.40 -1.36 16 21 C -0.12 -1.42 9.43 -39.56 -0.37 -1.80 16 22 C -0.13 -2.00 5.37 -104.65 -0.56 -2.57 16 23 C 0.51 8.07 2.81 36.01 0.10 8.17 16 24 F -0.19 -2.65 15.97 2.25 0.04 -2.61 16 25 F -0.18 -2.96 15.33 2.25 0.03 -2.92 16 26 F -0.15 -2.68 15.04 2.25 0.03 -2.65 16 27 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.05 1.07 7.11 -51.93 -0.37 0.70 16 30 H 0.09 2.45 5.95 -51.93 -0.31 2.14 16 31 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 33 H 0.33 7.12 8.39 -39.29 -0.33 6.80 16 34 H 0.05 1.19 7.24 -51.93 -0.38 0.81 16 35 H 0.08 1.54 5.50 -51.93 -0.29 1.25 16 36 H 0.05 0.44 7.66 -51.93 -0.40 0.04 16 37 H 0.05 0.48 7.66 -51.92 -0.40 0.08 16 38 H 0.10 0.97 8.14 -51.93 -0.42 0.54 16 39 H 0.13 1.14 6.30 -52.49 -0.33 0.81 16 40 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 41 H 0.14 1.37 7.15 -52.49 -0.38 0.99 16 LS Contribution 344.34 15.07 5.19 5.19 Total: -1.00 -29.35 344.34 -6.81 -36.17 By element: Atomic # 1 Polarization: 10.07 SS G_CDS: -5.24 Total: 4.83 kcal Atomic # 6 Polarization: -8.09 SS G_CDS: -1.73 Total: -9.82 kcal Atomic # 7 Polarization: -39.74 SS G_CDS: 0.07 Total: -39.67 kcal Atomic # 8 Polarization: -4.59 SS G_CDS: -0.19 Total: -4.78 kcal Atomic # 9 Polarization: -8.29 SS G_CDS: 0.10 Total: -8.19 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -29.35 -6.81 -36.17 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255156658.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.272 kcal (2) G-P(sol) polarization free energy of solvation -29.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds