Wall clock time and date at job start Tue Mar 31 2020 12:58:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.46836 * 2 1 4 4 H 1.08998 * 109.47813 * 304.62788 * 3 2 1 5 5 C 1.50698 * 109.47037 * 184.62185 * 3 2 1 6 6 H 1.07994 * 120.00519 * 240.00111 * 5 3 2 7 7 C 1.37877 * 119.99516 * 59.73247 * 5 3 2 8 8 N 1.31511 * 120.00471 * 0.27112 * 7 5 3 9 9 Si 1.86809 * 120.00025 * 180.27403 * 7 5 3 10 10 H 1.48498 * 109.46823 * 59.99568 * 9 7 5 11 11 H 1.48491 * 109.47320 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.47217 * 300.00041 * 9 7 5 13 13 N 1.46911 * 109.46912 * 64.62903 * 3 2 1 14 14 C 1.46902 * 110.99766 * 203.34464 * 13 3 2 15 15 C 1.50700 * 109.47132 * 184.92009 * 14 13 3 16 16 C 1.38754 * 120.02448 * 89.99965 * 15 14 13 17 17 O 1.35895 * 120.05994 * 359.97438 * 16 15 14 18 18 C 1.42897 * 117.00175 * 179.97438 * 17 16 15 19 19 C 1.38715 * 119.88481 * 180.02562 * 16 15 14 20 20 C 1.38167 * 119.94492 * 359.97438 * 19 16 15 21 21 C 1.38244 * 120.05506 * 359.97438 * 20 19 16 22 22 C 1.38122 * 120.02931 * 269.73031 * 15 14 13 23 23 C 1.50700 * 119.96953 * 359.97438 * 22 15 14 24 24 F 1.39901 * 109.46832 * 180.02562 * 23 22 15 25 25 F 1.39895 * 109.47556 * 300.00152 * 23 22 15 26 26 F 1.39901 * 109.47106 * 60.00620 * 23 22 15 27 27 H 1.09004 * 109.47031 * 54.67153 * 1 2 3 28 28 H 1.08999 * 109.47126 * 174.66562 * 1 2 3 29 29 H 1.08996 * 109.47364 * 294.66474 * 1 2 3 30 30 H 1.09000 * 109.47184 * 240.00391 * 2 1 3 31 31 H 1.08994 * 109.47291 * 120.00182 * 2 1 3 32 32 H 0.96998 * 120.00449 * 180.02562 * 8 7 5 33 33 H 1.00895 * 110.99556 * 79.39465 * 13 3 2 34 34 H 1.08997 * 109.47351 * 304.92036 * 14 13 3 35 35 H 1.09001 * 109.47126 * 64.92155 * 14 13 3 36 36 H 1.08995 * 109.47617 * 300.00800 * 18 17 16 37 37 H 1.09007 * 109.46835 * 60.00662 * 18 17 16 38 38 H 1.09005 * 109.47292 * 180.02562 * 18 17 16 39 39 H 1.08001 * 120.02667 * 179.97438 * 19 16 15 40 40 H 1.07995 * 119.96884 * 180.02562 * 20 19 16 41 41 H 1.08002 * 119.94240 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6105 1.9798 -0.8456 5 6 3.5426 1.4441 -0.1145 6 1 4.1430 1.8903 0.6643 7 6 4.1509 0.8708 -1.2110 8 7 3.4198 0.3274 -2.1595 9 14 6.0139 0.8659 -1.3494 10 1 6.5940 0.1351 -0.1942 11 1 6.4147 0.1941 -2.6115 12 1 6.5137 2.2643 -1.3520 13 7 1.6436 2.1019 1.2515 14 6 1.6038 3.5613 1.0879 15 6 1.3128 4.2081 2.4175 16 6 2.3565 4.5640 3.2597 17 8 3.6422 4.3293 2.8871 18 6 4.6654 4.7223 3.8039 19 6 2.0854 5.1587 4.4832 20 6 0.7774 5.3958 4.8600 21 6 -0.2606 5.0412 4.0186 22 6 0.0072 4.4523 2.7964 23 6 -1.1265 4.0721 1.8792 24 9 -2.3443 4.4161 2.4758 25 9 -0.9932 4.7545 0.6653 26 9 -1.0945 2.6932 1.6451 27 1 -0.3633 0.5943 -0.8385 28 1 -0.3633 -1.0232 -0.0955 29 1 -0.3634 0.4288 0.9339 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 3.8478 -0.0762 -2.9307 33 1 2.2570 1.8395 2.0084 34 1 2.5668 3.9116 0.7164 35 1 0.8217 3.8259 0.3762 36 1 4.6028 5.7961 3.9799 37 1 4.5322 4.1912 4.7465 38 1 5.6418 4.4794 3.3846 39 1 2.8960 5.4362 5.1407 40 1 0.5658 5.8592 5.8123 41 1 -1.2824 5.2278 4.3148 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255156658.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:58:53 Heat of formation + Delta-G solvation = -181.644215 kcal Electronic energy + Delta-G solvation = -28281.798749 eV Core-core repulsion = 23939.312510 eV Total energy + Delta-G solvation = -4342.486239 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.134 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -51.08739 -48.65063 -48.43033 -41.36836 -38.67698 -37.89190 -34.87520 -33.48191 -32.30748 -31.30251 -28.58682 -28.24933 -26.93965 -25.78144 -24.30459 -22.81630 -22.33788 -21.39542 -19.59787 -19.43783 -19.33702 -18.64965 -17.63156 -17.19912 -16.95211 -16.79436 -16.61168 -15.84731 -15.51120 -15.35475 -15.25951 -15.10715 -14.95638 -14.67115 -14.65913 -14.60715 -14.30016 -14.07632 -13.75647 -13.48009 -13.40446 -13.06594 -13.03722 -12.82521 -12.72507 -12.56738 -12.41913 -12.10462 -12.07780 -11.79096 -11.50062 -11.36700 -11.00140 -10.44607 -10.14348 -9.29882 -8.99062 -8.02723 -6.24680 -0.08753 0.31696 1.38392 1.39319 1.47161 1.70751 2.34997 2.41265 2.48834 2.85456 3.16315 3.21319 3.49302 3.59985 3.86676 3.96204 4.03584 4.20494 4.39710 4.41514 4.44745 4.54431 4.63016 4.65833 4.74546 4.77142 4.95656 4.96231 5.16281 5.22250 5.28452 5.29981 5.43587 5.53322 5.61556 5.63937 5.78194 6.12190 6.19738 6.36371 6.42825 6.78499 7.01039 7.45811 8.93860 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.012676 B = 0.005614 C = 0.004193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2208.323746 B = 4986.694118 C = 6676.336526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.098 4.098 3 C 0.225 3.775 4 H -0.007 1.007 5 C -0.554 4.554 6 H 0.050 0.950 7 C 0.019 3.981 8 N -0.913 5.913 9 Si 0.951 3.049 10 H -0.270 1.270 11 H -0.284 1.284 12 H -0.276 1.276 13 N -0.659 5.659 14 C 0.103 3.897 15 C -0.083 4.083 16 C 0.118 3.882 17 O -0.336 6.336 18 C 0.018 3.982 19 C -0.172 4.172 20 C -0.072 4.072 21 C -0.115 4.115 22 C -0.143 4.143 23 C 0.505 3.495 24 F -0.175 7.175 25 F -0.188 7.188 26 F -0.167 7.167 27 H 0.025 0.975 28 H 0.043 0.957 29 H 0.057 0.943 30 H 0.062 0.938 31 H 0.028 0.972 32 H 0.261 0.739 33 H 0.326 0.674 34 H 0.024 0.976 35 H 0.060 0.940 36 H 0.076 0.924 37 H 0.073 0.927 38 H 0.103 0.897 39 H 0.167 0.833 40 H 0.178 0.822 41 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.394 11.929 16.908 21.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.137 4.137 3 C 0.116 3.884 4 H 0.011 0.989 5 C -0.593 4.593 6 H 0.068 0.932 7 C -0.181 4.181 8 N -0.552 5.552 9 Si 0.777 3.223 10 H -0.196 1.196 11 H -0.209 1.209 12 H -0.201 1.201 13 N -0.287 5.287 14 C -0.026 4.026 15 C -0.084 4.084 16 C 0.072 3.928 17 O -0.249 6.249 18 C -0.076 4.076 19 C -0.191 4.191 20 C -0.090 4.090 21 C -0.133 4.133 22 C -0.145 4.145 23 C 0.451 3.549 24 F -0.157 7.157 25 F -0.169 7.169 26 F -0.148 7.148 27 H 0.045 0.955 28 H 0.062 0.938 29 H 0.076 0.924 30 H 0.081 0.919 31 H 0.047 0.953 32 H 0.071 0.929 33 H 0.142 0.858 34 H 0.042 0.958 35 H 0.079 0.921 36 H 0.094 0.906 37 H 0.092 0.908 38 H 0.121 0.879 39 H 0.185 0.815 40 H 0.195 0.805 41 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -5.009 11.648 16.387 20.720 hybrid contribution 1.891 -0.030 -0.920 2.103 sum -3.118 11.618 15.467 19.594 Atomic orbital electron populations 1.21547 0.96581 0.99288 1.00567 1.21320 0.94177 0.98156 1.00046 1.18900 0.91696 0.91391 0.86374 0.98863 1.22103 0.93838 1.37551 1.05834 0.93155 1.25676 1.02180 0.94827 0.95414 1.70008 1.36486 1.38718 1.09973 0.85724 0.81041 0.78104 0.77412 1.19552 1.20925 1.20150 1.61015 1.55767 1.04210 1.07739 1.20638 0.99523 0.89777 0.92688 1.18955 0.91155 1.01314 0.97017 1.18889 0.84008 0.96234 0.93675 1.86204 1.13007 1.78837 1.46867 1.23373 0.89332 1.01268 0.93639 1.21791 1.00049 1.02006 0.95212 1.21352 0.90304 0.97020 1.00303 1.21207 1.02278 0.98249 0.91565 1.19643 0.90929 1.06446 0.97489 1.18382 0.82088 0.75343 0.79090 1.93132 1.47090 1.92101 1.83333 1.93143 1.95709 1.80167 1.47912 1.93311 1.96411 1.30379 1.94681 0.95547 0.93751 0.92426 0.91917 0.95281 0.92943 0.85764 0.95759 0.92149 0.90557 0.90803 0.87889 0.81526 0.80467 0.82401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.38 9.73 71.98 0.70 -4.68 16 2 C -0.10 -4.99 5.45 30.59 0.17 -4.82 16 3 C 0.23 11.88 1.97 44.16 0.09 11.97 16 4 H -0.01 -0.40 7.88 -2.39 -0.02 -0.41 16 5 C -0.55 -31.15 8.24 25.60 0.21 -30.94 16 6 H 0.05 2.82 7.76 -2.91 -0.02 2.79 16 7 C 0.02 1.06 5.29 84.66 0.45 1.50 16 8 N -0.91 -53.75 11.29 21.45 0.24 -53.51 16 9 Si 0.95 44.41 29.54 68.60 2.03 46.43 16 10 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 11 H -0.28 -12.98 7.11 99.48 0.71 -12.28 16 12 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 13 N -0.66 -29.65 5.09 -499.45 -2.54 -32.19 16 14 C 0.10 4.33 4.52 85.56 0.39 4.72 16 15 C -0.08 -2.79 5.32 -19.77 -0.11 -2.90 16 16 C 0.12 3.37 6.66 22.51 0.15 3.52 16 17 O -0.34 -10.26 9.54 -92.36 -0.88 -11.14 16 18 C 0.02 0.33 9.81 113.37 1.11 1.45 16 19 C -0.17 -3.27 9.04 22.37 0.20 -3.07 16 20 C -0.07 -1.15 10.04 22.25 0.22 -0.93 16 21 C -0.11 -2.40 9.43 22.28 0.21 -2.19 16 22 C -0.14 -4.20 5.37 -19.88 -0.11 -4.30 16 23 C 0.51 16.11 2.81 71.24 0.20 16.31 16 24 F -0.18 -4.77 15.97 44.97 0.72 -4.05 16 25 F -0.19 -6.52 15.33 44.97 0.69 -5.83 16 26 F -0.17 -6.17 15.04 44.97 0.68 -5.49 16 27 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 28 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 29 H 0.06 2.44 7.11 -2.39 -0.02 2.42 16 30 H 0.06 3.54 5.95 -2.39 -0.01 3.53 16 31 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.26 14.68 8.31 -92.71 -0.77 13.91 16 33 H 0.33 14.74 8.39 -89.70 -0.75 13.99 16 34 H 0.02 1.14 7.24 -2.39 -0.02 1.12 16 35 H 0.06 2.66 5.50 -2.39 -0.01 2.64 16 36 H 0.08 1.03 7.66 -2.39 -0.02 1.01 16 37 H 0.07 1.07 7.66 -2.38 -0.02 1.05 16 38 H 0.10 1.83 8.14 -2.38 -0.02 1.81 16 39 H 0.17 1.98 6.30 -2.91 -0.02 1.96 16 40 H 0.18 1.29 8.06 -2.91 -0.02 1.26 16 41 H 0.16 2.55 7.15 -2.91 -0.02 2.53 16 Total: -1.00 -67.13 344.34 5.13 -61.99 By element: Atomic # 1 Polarization: 17.84 SS G_CDS: 0.32 Total: 18.16 kcal Atomic # 6 Polarization: -18.25 SS G_CDS: 3.89 Total: -14.37 kcal Atomic # 7 Polarization: -83.40 SS G_CDS: -2.30 Total: -85.70 kcal Atomic # 8 Polarization: -10.26 SS G_CDS: -0.88 Total: -11.14 kcal Atomic # 9 Polarization: -17.46 SS G_CDS: 2.08 Total: -15.37 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.43 kcal Total: -67.13 5.13 -61.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255156658.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.650 kcal (2) G-P(sol) polarization free energy of solvation -67.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -186.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds