Wall clock time and date at job start Tue Mar 31 2020 12:58:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.47353 * 2 1 4 4 H 1.09003 * 109.46990 * 175.22063 * 3 2 1 5 5 C 1.50704 * 109.47137 * 55.22651 * 3 2 1 6 6 H 1.07994 * 119.99825 * 245.72407 * 5 3 2 7 7 C 1.37876 * 120.00200 * 65.72099 * 5 3 2 8 8 N 1.31513 * 119.99897 * 5.51787 * 7 5 3 9 9 Si 1.86798 * 120.00165 * 185.51931 * 7 5 3 10 10 H 1.48500 * 109.47316 * 270.00103 * 9 7 5 11 11 H 1.48498 * 109.47057 * 30.00101 * 9 7 5 12 12 H 1.48501 * 109.47121 * 149.99803 * 9 7 5 13 13 N 1.46896 * 109.47494 * 295.22257 * 3 2 1 14 14 C 1.46896 * 111.00229 * 279.79967 * 13 3 2 15 15 C 1.50702 * 109.46938 * 184.98112 * 14 13 3 16 16 C 1.38290 * 119.94144 * 90.00012 * 15 14 13 17 17 C 1.38122 * 120.05037 * 179.97438 * 16 15 14 18 18 C 1.38756 * 119.94641 * 0.02562 * 17 16 15 19 19 O 1.35903 * 120.05801 * 180.02562 * 18 17 16 20 20 C 1.42901 * 116.99891 * 359.97438 * 19 18 17 21 21 C 1.38715 * 119.88948 * 359.97438 * 18 17 16 22 22 C 1.50698 * 120.02671 * 180.02562 * 21 18 17 23 23 F 1.39902 * 109.46896 * 180.02562 * 22 21 18 24 24 F 1.39902 * 109.47207 * 300.00122 * 22 21 18 25 25 F 1.39894 * 109.47043 * 60.00568 * 22 21 18 26 26 C 1.38165 * 119.94156 * 359.70957 * 21 18 17 27 27 H 1.08999 * 109.46622 * 304.94605 * 1 2 3 28 28 H 1.08996 * 109.47031 * 64.94371 * 1 2 3 29 29 H 1.08999 * 109.47098 * 184.94848 * 1 2 3 30 30 H 1.09000 * 109.46703 * 240.00057 * 2 1 3 31 31 H 1.08999 * 109.47161 * 120.00040 * 2 1 3 32 32 H 0.97002 * 120.00155 * 355.15166 * 8 7 5 33 33 H 1.00900 * 111.00246 * 155.83477 * 13 3 2 34 34 H 1.09003 * 109.46721 * 304.97686 * 14 13 3 35 35 H 1.09002 * 109.47443 * 64.97614 * 14 13 3 36 36 H 1.07995 * 119.97690 * 359.97438 * 16 15 14 37 37 H 1.07999 * 120.03140 * 180.02562 * 17 16 15 38 38 H 1.08994 * 109.47531 * 180.02562 * 20 19 18 39 39 H 1.09004 * 109.47122 * 300.00533 * 20 19 18 40 40 H 1.09005 * 109.47119 * 59.99770 * 20 19 18 41 41 H 1.07993 * 119.97482 * 180.31050 * 26 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 3.1267 1.4435 0.0856 5 6 1.4435 2.1862 1.1671 6 1 0.7593 3.0035 0.9937 7 6 1.7712 1.8231 2.4562 8 7 2.6853 0.9016 2.6675 9 14 0.9167 2.6400 3.9025 10 1 1.6809 3.8455 4.3125 11 1 -0.4581 3.0369 3.5054 12 1 0.8479 1.6871 5.0394 13 7 1.6469 2.1009 -1.2529 14 6 2.5539 1.7329 -2.3482 15 6 2.1952 2.5188 -3.5830 16 6 2.7859 3.7475 -3.8150 17 6 2.4592 4.4694 -4.9463 18 6 1.5370 3.9613 -5.8499 19 8 1.2141 4.6695 -6.9640 20 6 1.8624 5.9306 -7.1415 21 6 0.9458 2.7286 -5.6148 22 6 -0.0558 2.1735 -6.5945 23 9 -0.5087 0.9290 -6.1435 24 9 -1.1389 3.0523 -6.7025 25 9 0.5501 2.0239 -7.8465 26 6 1.2809 2.0073 -4.4850 27 1 -0.3632 0.5887 0.8424 28 1 -0.3633 0.4352 -0.9309 29 1 -0.3633 -1.0238 0.0886 30 1 1.8932 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.0785 0.4275 1.9181 33 1 1.6064 3.1025 -1.1378 34 1 3.5810 1.9574 -2.0603 35 1 2.4595 0.6670 -2.5557 36 1 3.5034 4.1428 -3.1112 37 1 2.9210 5.4287 -5.1274 38 1 1.5154 6.3904 -8.0668 39 1 1.6250 6.5826 -6.3009 40 1 2.9409 5.7808 -7.1919 41 1 0.8248 1.0453 -4.3040 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255156759.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:58:14 Heat of formation + Delta-G solvation = -172.155424 kcal Electronic energy + Delta-G solvation = -26989.632204 eV Core-core repulsion = 22647.557430 eV Total energy + Delta-G solvation = -4342.074774 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.134 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -50.07429 -47.61051 -47.51913 -40.50780 -38.16440 -36.40773 -33.36269 -32.10872 -31.09476 -29.89255 -27.88945 -26.23558 -25.85831 -23.96196 -23.44577 -22.38640 -21.16922 -19.30765 -18.74897 -18.42455 -18.37447 -17.52739 -16.93059 -16.36438 -16.06275 -14.95511 -14.72244 -14.61140 -14.42995 -14.32316 -14.17893 -13.97504 -13.76682 -13.70475 -13.70357 -13.64095 -13.30234 -12.91126 -12.69939 -12.32021 -12.27190 -12.06345 -11.83815 -11.28633 -11.19825 -11.10048 -11.02671 -10.78737 -10.18119 -10.11348 -9.92294 -9.74866 -9.39559 -8.61937 -8.38460 -8.30809 -7.44584 -6.37186 -4.09648 0.84571 1.16761 2.69372 2.88869 3.35132 3.40473 3.45577 3.60548 3.75419 4.04028 4.47471 4.49104 4.54874 4.70844 4.83489 4.84360 4.95716 5.15322 5.17787 5.25418 5.34486 5.37572 5.51424 5.83954 5.88584 6.02783 6.06325 6.29054 6.38957 6.44881 6.54056 6.59032 6.92074 6.96512 7.02983 7.23088 7.39990 7.55433 7.82155 8.05083 8.45343 8.53842 8.84418 9.61127 10.99404 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.018811 B = 0.003222 C = 0.002996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1488.094675 B = 8687.475744 C = 9343.410727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.108 4.108 3 C 0.203 3.797 4 H -0.008 1.008 5 C -0.591 4.591 6 H 0.054 0.946 7 C 0.023 3.977 8 N -0.912 5.912 9 Si 1.068 2.932 10 H -0.290 1.290 11 H -0.288 1.288 12 H -0.285 1.285 13 N -0.673 5.673 14 C 0.097 3.903 15 C -0.105 4.105 16 C -0.043 4.043 17 C -0.210 4.210 18 C 0.168 3.832 19 O -0.312 6.312 20 C 0.027 3.973 21 C -0.220 4.220 22 C 0.519 3.481 23 F -0.178 7.178 24 F -0.176 7.176 25 F -0.178 7.178 26 C -0.016 4.016 27 H 0.063 0.937 28 H 0.045 0.955 29 H 0.017 0.983 30 H 0.020 0.980 31 H 0.058 0.942 32 H 0.271 0.729 33 H 0.335 0.665 34 H 0.032 0.968 35 H 0.075 0.925 36 H 0.133 0.867 37 H 0.137 0.863 38 H 0.102 0.898 39 H 0.059 0.941 40 H 0.058 0.942 41 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.354 6.917 -19.356 20.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.146 4.146 3 C 0.095 3.905 4 H 0.010 0.990 5 C -0.629 4.629 6 H 0.073 0.927 7 C -0.182 4.182 8 N -0.549 5.549 9 Si 0.897 3.103 10 H -0.216 1.216 11 H -0.214 1.214 12 H -0.210 1.210 13 N -0.304 5.304 14 C -0.032 4.032 15 C -0.106 4.106 16 C -0.061 4.061 17 C -0.229 4.229 18 C 0.121 3.879 19 O -0.225 6.225 20 C -0.068 4.068 21 C -0.222 4.222 22 C 0.465 3.535 23 F -0.160 7.160 24 F -0.157 7.157 25 F -0.159 7.159 26 C -0.035 4.035 27 H 0.082 0.918 28 H 0.064 0.936 29 H 0.036 0.964 30 H 0.039 0.961 31 H 0.076 0.924 32 H 0.083 0.917 33 H 0.152 0.848 34 H 0.050 0.950 35 H 0.093 0.907 36 H 0.151 0.849 37 H 0.155 0.845 38 H 0.121 0.879 39 H 0.078 0.922 40 H 0.077 0.923 41 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -1.009 6.440 -18.033 19.175 hybrid contribution 0.858 0.558 -1.529 1.840 sum -0.151 6.998 -19.562 20.777 Atomic orbital electron populations 1.21455 0.96352 0.97917 1.02074 1.21526 0.96520 0.98208 0.98378 1.19304 0.93172 0.91745 0.86252 0.99042 1.21925 1.30632 1.18714 0.91659 0.92748 1.25696 0.95512 0.96892 1.00072 1.70771 1.24259 1.24086 1.35799 0.83554 0.75622 0.75681 0.75464 1.21641 1.21358 1.21043 1.60683 1.50247 1.13487 1.05960 1.20906 0.94748 0.98662 0.88896 1.19947 0.97739 0.95743 0.97129 1.21147 0.96783 0.92977 0.95210 1.21151 1.02321 1.02514 0.96882 1.18510 0.92936 0.89959 0.86453 1.86120 1.64491 1.32720 1.39126 1.23124 0.97694 0.82830 1.03104 1.19275 1.05672 0.97136 1.00160 1.17988 0.80286 0.75389 0.79848 1.93169 1.90063 1.43770 1.88954 1.93206 1.57216 1.69032 1.96250 1.93194 1.83167 1.95576 1.43973 1.20800 0.93699 0.99139 0.89830 0.91803 0.93572 0.96376 0.96085 0.92370 0.91679 0.84775 0.95018 0.90696 0.84902 0.84536 0.87943 0.92201 0.92312 0.83671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.62 9.53 37.16 0.35 -2.27 16 2 C -0.11 -2.45 5.47 -26.74 -0.15 -2.60 16 3 C 0.20 4.79 1.92 -68.87 -0.13 4.66 16 4 H -0.01 -0.20 7.31 -51.93 -0.38 -0.58 16 5 C -0.59 -15.52 6.92 -34.44 -0.24 -15.76 16 6 H 0.05 1.45 7.75 -52.49 -0.41 1.04 16 7 C 0.02 0.62 5.28 -17.82 -0.09 0.53 16 8 N -0.91 -26.35 13.20 55.43 0.73 -25.62 16 9 Si 1.07 24.48 29.91 -169.99 -5.08 19.40 16 10 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 11 H -0.29 -6.34 7.11 56.52 0.40 -5.93 16 12 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 13 N -0.67 -13.29 5.85 -109.22 -0.64 -13.93 16 14 C 0.10 1.59 5.63 -4.98 -0.03 1.56 16 15 C -0.10 -1.47 5.34 -104.60 -0.56 -2.03 16 16 C -0.04 -0.52 9.69 -39.61 -0.38 -0.90 16 17 C -0.21 -2.31 9.04 -39.43 -0.36 -2.66 16 18 C 0.17 2.10 6.57 -39.21 -0.26 1.84 16 19 O -0.31 -3.59 9.41 -19.44 -0.18 -3.77 16 20 C 0.03 0.19 9.81 101.05 0.99 1.18 16 21 C -0.22 -3.01 5.38 -104.47 -0.56 -3.57 16 22 C 0.52 7.13 2.99 36.00 0.11 7.23 16 23 F -0.18 -2.45 15.97 2.25 0.04 -2.41 16 24 F -0.18 -2.51 16.95 2.25 0.04 -2.47 16 25 F -0.18 -2.43 16.95 2.25 0.04 -2.39 16 26 C -0.02 -0.22 9.08 -39.60 -0.36 -0.58 16 27 H 0.06 1.52 6.89 -51.93 -0.36 1.16 16 28 H 0.05 0.96 7.89 -51.93 -0.41 0.55 16 29 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.02 0.43 7.13 -51.93 -0.37 0.06 16 31 H 0.06 1.45 6.18 -51.93 -0.32 1.13 16 32 H 0.27 7.78 5.62 -40.82 -0.23 7.55 16 33 H 0.33 6.62 8.30 -39.29 -0.33 6.29 16 34 H 0.03 0.52 7.89 -51.93 -0.41 0.11 16 35 H 0.07 1.23 7.14 -51.93 -0.37 0.86 16 36 H 0.13 1.43 8.06 -52.49 -0.42 1.01 16 37 H 0.14 1.11 6.30 -52.49 -0.33 0.78 16 38 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.06 0.36 7.66 -51.93 -0.40 -0.03 16 40 H 0.06 0.33 7.66 -51.93 -0.40 -0.06 16 41 H 0.15 1.97 7.16 -52.49 -0.38 1.60 16 LS Contribution 347.45 15.07 5.24 5.24 Total: -1.00 -29.37 347.45 -6.64 -36.00 By element: Atomic # 1 Polarization: 8.48 SS G_CDS: -5.15 Total: 3.33 kcal Atomic # 6 Polarization: -11.71 SS G_CDS: -1.66 Total: -13.37 kcal Atomic # 7 Polarization: -39.64 SS G_CDS: 0.09 Total: -39.55 kcal Atomic # 8 Polarization: -3.59 SS G_CDS: -0.18 Total: -3.77 kcal Atomic # 9 Polarization: -7.39 SS G_CDS: 0.11 Total: -7.28 kcal Atomic # 14 Polarization: 24.48 SS G_CDS: -5.08 Total: 19.40 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -29.37 -6.64 -36.00 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255156759.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -136.152 kcal (2) G-P(sol) polarization free energy of solvation -29.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds