Wall clock time and date at job start Tue Mar 31 2020 12:58:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.47353 * 2 1 4 4 H 1.09003 * 109.46990 * 175.22063 * 3 2 1 5 5 C 1.50704 * 109.47137 * 55.22651 * 3 2 1 6 6 H 1.07994 * 119.99825 * 245.72407 * 5 3 2 7 7 C 1.37876 * 120.00200 * 65.72099 * 5 3 2 8 8 N 1.31513 * 119.99897 * 5.51787 * 7 5 3 9 9 Si 1.86798 * 120.00165 * 185.51931 * 7 5 3 10 10 H 1.48500 * 109.47316 * 270.00103 * 9 7 5 11 11 H 1.48498 * 109.47057 * 30.00101 * 9 7 5 12 12 H 1.48501 * 109.47121 * 149.99803 * 9 7 5 13 13 N 1.46896 * 109.47494 * 295.22257 * 3 2 1 14 14 C 1.46896 * 111.00229 * 279.79967 * 13 3 2 15 15 C 1.50702 * 109.46938 * 184.98112 * 14 13 3 16 16 C 1.38290 * 119.94144 * 90.00012 * 15 14 13 17 17 C 1.38122 * 120.05037 * 179.97438 * 16 15 14 18 18 C 1.38756 * 119.94641 * 0.02562 * 17 16 15 19 19 O 1.35903 * 120.05801 * 180.02562 * 18 17 16 20 20 C 1.42901 * 116.99891 * 359.97438 * 19 18 17 21 21 C 1.38715 * 119.88948 * 359.97438 * 18 17 16 22 22 C 1.50698 * 120.02671 * 180.02562 * 21 18 17 23 23 F 1.39902 * 109.46896 * 180.02562 * 22 21 18 24 24 F 1.39902 * 109.47207 * 300.00122 * 22 21 18 25 25 F 1.39894 * 109.47043 * 60.00568 * 22 21 18 26 26 C 1.38165 * 119.94156 * 359.70957 * 21 18 17 27 27 H 1.08999 * 109.46622 * 304.94605 * 1 2 3 28 28 H 1.08996 * 109.47031 * 64.94371 * 1 2 3 29 29 H 1.08999 * 109.47098 * 184.94848 * 1 2 3 30 30 H 1.09000 * 109.46703 * 240.00057 * 2 1 3 31 31 H 1.08999 * 109.47161 * 120.00040 * 2 1 3 32 32 H 0.97002 * 120.00155 * 355.15166 * 8 7 5 33 33 H 1.00900 * 111.00246 * 155.83477 * 13 3 2 34 34 H 1.09003 * 109.46721 * 304.97686 * 14 13 3 35 35 H 1.09002 * 109.47443 * 64.97614 * 14 13 3 36 36 H 1.07995 * 119.97690 * 359.97438 * 16 15 14 37 37 H 1.07999 * 120.03140 * 180.02562 * 17 16 15 38 38 H 1.08994 * 109.47531 * 180.02562 * 20 19 18 39 39 H 1.09004 * 109.47122 * 300.00533 * 20 19 18 40 40 H 1.09005 * 109.47119 * 59.99770 * 20 19 18 41 41 H 1.07993 * 119.97482 * 180.31050 * 26 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 3.1267 1.4435 0.0856 5 6 1.4435 2.1862 1.1671 6 1 0.7593 3.0035 0.9937 7 6 1.7712 1.8231 2.4562 8 7 2.6853 0.9016 2.6675 9 14 0.9167 2.6400 3.9025 10 1 1.6809 3.8455 4.3125 11 1 -0.4581 3.0369 3.5054 12 1 0.8479 1.6871 5.0394 13 7 1.6469 2.1009 -1.2529 14 6 2.5539 1.7329 -2.3482 15 6 2.1952 2.5188 -3.5830 16 6 2.7859 3.7475 -3.8150 17 6 2.4592 4.4694 -4.9463 18 6 1.5370 3.9613 -5.8499 19 8 1.2141 4.6695 -6.9640 20 6 1.8624 5.9306 -7.1415 21 6 0.9458 2.7286 -5.6148 22 6 -0.0558 2.1735 -6.5945 23 9 -0.5087 0.9290 -6.1435 24 9 -1.1389 3.0523 -6.7025 25 9 0.5501 2.0239 -7.8465 26 6 1.2809 2.0073 -4.4850 27 1 -0.3632 0.5887 0.8424 28 1 -0.3633 0.4352 -0.9309 29 1 -0.3633 -1.0238 0.0886 30 1 1.8932 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.0785 0.4275 1.9181 33 1 1.6064 3.1025 -1.1378 34 1 3.5810 1.9574 -2.0603 35 1 2.4595 0.6670 -2.5557 36 1 3.5034 4.1428 -3.1112 37 1 2.9210 5.4287 -5.1274 38 1 1.5154 6.3904 -8.0668 39 1 1.6250 6.5826 -6.3009 40 1 2.9409 5.7808 -7.1919 41 1 0.8248 1.0453 -4.3040 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255156759.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:58:13 Heat of formation + Delta-G solvation = -188.693119 kcal Electronic energy + Delta-G solvation = -26990.349332 eV Core-core repulsion = 22647.557430 eV Total energy + Delta-G solvation = -4342.791903 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.134 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -51.15427 -48.69215 -48.60594 -41.41992 -39.22555 -38.01832 -34.94064 -33.28946 -32.69792 -31.23062 -28.68168 -27.73759 -26.99147 -25.65162 -25.10369 -23.33850 -22.29693 -21.14094 -19.70971 -19.50539 -19.44309 -18.99681 -18.32146 -17.32570 -16.80571 -16.35992 -16.15215 -15.72529 -15.69956 -15.50654 -15.48554 -15.37465 -15.06314 -14.96774 -14.79551 -14.79445 -14.64525 -14.07601 -13.93375 -13.72760 -13.55583 -13.31627 -13.11895 -12.90814 -12.60605 -12.45853 -12.07965 -12.02289 -11.93555 -11.88237 -11.72414 -11.56078 -10.57991 -10.36072 -10.35848 -9.41272 -9.07010 -8.51788 -6.24421 -0.13475 0.18442 1.55950 1.64088 1.65266 1.81056 2.11574 2.34848 2.59924 2.71871 2.99756 3.26769 3.41144 3.60177 3.72869 3.82449 3.96030 4.14747 4.22453 4.35553 4.38984 4.42742 4.49193 4.57003 4.69916 4.73015 4.74946 4.79312 4.93361 5.06466 5.06860 5.22849 5.40532 5.43292 5.52006 5.53184 5.72309 5.93115 6.13710 6.15654 6.52642 6.66006 6.83955 7.54185 8.85208 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.018811 B = 0.003222 C = 0.002996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1488.094675 B = 8687.475744 C = 9343.410727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.103 4.103 3 C 0.208 3.792 4 H -0.037 1.037 5 C -0.591 4.591 6 H 0.049 0.951 7 C -0.024 4.024 8 N -0.940 5.940 9 Si 1.110 2.890 10 H -0.276 1.276 11 H -0.273 1.273 12 H -0.288 1.288 13 N -0.670 5.670 14 C 0.103 3.897 15 C -0.119 4.119 16 C -0.040 4.040 17 C -0.200 4.200 18 C 0.169 3.831 19 O -0.328 6.328 20 C 0.015 3.985 21 C -0.236 4.236 22 C 0.520 3.480 23 F -0.181 7.181 24 F -0.180 7.180 25 F -0.178 7.178 26 C -0.022 4.022 27 H 0.039 0.961 28 H 0.053 0.947 29 H 0.037 0.963 30 H 0.038 0.962 31 H 0.032 0.968 32 H 0.261 0.739 33 H 0.334 0.666 34 H 0.031 0.969 35 H 0.072 0.928 36 H 0.148 0.852 37 H 0.171 0.829 38 H 0.121 0.879 39 H 0.071 0.929 40 H 0.074 0.926 41 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.533 8.610 -20.496 22.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.142 4.142 3 C 0.099 3.901 4 H -0.019 1.019 5 C -0.630 4.630 6 H 0.067 0.933 7 C -0.223 4.223 8 N -0.578 5.578 9 Si 0.933 3.067 10 H -0.202 1.202 11 H -0.198 1.198 12 H -0.214 1.214 13 N -0.300 5.300 14 C -0.025 4.025 15 C -0.120 4.120 16 C -0.058 4.058 17 C -0.218 4.218 18 C 0.122 3.878 19 O -0.241 6.241 20 C -0.079 4.079 21 C -0.238 4.238 22 C 0.466 3.534 23 F -0.162 7.162 24 F -0.162 7.162 25 F -0.160 7.160 26 C -0.040 4.040 27 H 0.058 0.942 28 H 0.072 0.928 29 H 0.056 0.944 30 H 0.057 0.943 31 H 0.050 0.950 32 H 0.072 0.928 33 H 0.152 0.848 34 H 0.049 0.951 35 H 0.090 0.910 36 H 0.165 0.835 37 H 0.188 0.812 38 H 0.139 0.861 39 H 0.090 0.910 40 H 0.093 0.907 41 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -1.189 8.149 -19.212 20.902 hybrid contribution 0.930 0.100 -1.334 1.629 sum -0.259 8.249 -20.545 22.141 Atomic orbital electron populations 1.21337 0.95283 0.98826 1.01352 1.21430 0.97333 0.97521 0.97929 1.19113 0.91212 0.92394 0.87413 1.01931 1.22190 1.29818 1.18324 0.92656 0.93256 1.26922 0.95473 0.96900 1.02978 1.70874 1.25931 1.25557 1.35432 0.83008 0.75584 0.75261 0.72838 1.20238 1.19838 1.21429 1.60592 1.51197 1.13201 1.05059 1.20822 0.93999 0.98971 0.88749 1.19703 0.99179 0.96698 0.96414 1.21335 0.96478 0.92154 0.95832 1.21448 1.01350 1.03401 0.95608 1.18676 0.92558 0.89614 0.86944 1.86117 1.65135 1.34339 1.38515 1.23494 0.98588 0.81171 1.04613 1.19318 1.06276 0.98053 1.00176 1.18032 0.80242 0.75223 0.79931 1.93159 1.90121 1.43967 1.88984 1.93191 1.57504 1.69186 1.96290 1.93186 1.83146 1.95573 1.44064 1.20749 0.93894 0.99219 0.90173 0.94171 0.92755 0.94371 0.94291 0.94980 0.92799 0.84805 0.95074 0.91000 0.83462 0.81197 0.86076 0.91021 0.90721 0.84086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.74 9.53 71.98 0.69 -4.05 16 2 C -0.10 -4.74 5.47 30.59 0.17 -4.57 16 3 C 0.21 9.90 1.92 44.17 0.08 9.98 16 4 H -0.04 -1.94 7.31 -2.39 -0.02 -1.96 16 5 C -0.59 -31.25 6.92 25.60 0.18 -31.08 16 6 H 0.05 2.61 7.75 -2.91 -0.02 2.59 16 7 C -0.02 -1.30 5.28 84.65 0.45 -0.86 16 8 N -0.94 -55.29 13.20 21.45 0.28 -55.01 16 9 Si 1.11 49.10 29.91 68.60 2.05 51.16 16 10 H -0.28 -11.58 7.11 99.48 0.71 -10.87 16 11 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 12 H -0.29 -12.87 7.11 99.48 0.71 -12.16 16 13 N -0.67 -26.27 5.85 -499.47 -2.92 -29.19 16 14 C 0.10 3.33 5.63 85.56 0.48 3.82 16 15 C -0.12 -3.22 5.34 -19.85 -0.11 -3.33 16 16 C -0.04 -0.87 9.69 22.25 0.22 -0.66 16 17 C -0.20 -3.78 9.04 22.37 0.20 -3.58 16 18 C 0.17 3.86 6.57 22.51 0.15 4.01 16 19 O -0.33 -6.76 9.41 -92.46 -0.87 -7.63 16 20 C 0.01 0.16 9.81 113.37 1.11 1.27 16 21 C -0.24 -6.18 5.38 -19.77 -0.11 -6.29 16 22 C 0.52 13.89 2.99 71.24 0.21 14.11 16 23 F -0.18 -4.91 15.97 44.97 0.72 -4.19 16 24 F -0.18 -5.01 16.95 44.97 0.76 -4.25 16 25 F -0.18 -4.72 16.95 44.97 0.76 -3.96 16 26 C -0.02 -0.59 9.08 22.25 0.20 -0.38 16 27 H 0.04 1.88 6.89 -2.39 -0.02 1.87 16 28 H 0.05 2.20 7.89 -2.39 -0.02 2.18 16 29 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 30 H 0.04 1.61 7.13 -2.39 -0.02 1.59 16 31 H 0.03 1.62 6.18 -2.39 -0.01 1.61 16 32 H 0.26 15.47 5.62 -92.71 -0.52 14.94 16 33 H 0.33 13.06 8.30 -89.69 -0.74 12.31 16 34 H 0.03 1.01 7.89 -2.39 -0.02 0.99 16 35 H 0.07 2.34 7.14 -2.39 -0.02 2.32 16 36 H 0.15 2.80 8.06 -2.91 -0.02 2.78 16 37 H 0.17 2.01 6.30 -2.91 -0.02 1.99 16 38 H 0.12 0.82 8.14 -2.39 -0.02 0.80 16 39 H 0.07 0.61 7.66 -2.38 -0.02 0.59 16 40 H 0.07 0.57 7.66 -2.38 -0.02 0.55 16 41 H 0.14 3.82 7.16 -2.91 -0.02 3.80 16 Total: -1.00 -63.25 347.45 5.29 -57.96 By element: Atomic # 1 Polarization: 16.14 SS G_CDS: 0.57 Total: 16.72 kcal Atomic # 6 Polarization: -25.53 SS G_CDS: 3.93 Total: -21.61 kcal Atomic # 7 Polarization: -81.57 SS G_CDS: -2.64 Total: -84.20 kcal Atomic # 8 Polarization: -6.76 SS G_CDS: -0.87 Total: -7.63 kcal Atomic # 9 Polarization: -14.65 SS G_CDS: 2.24 Total: -12.40 kcal Atomic # 14 Polarization: 49.10 SS G_CDS: 2.05 Total: 51.16 kcal Total: -63.25 5.29 -57.96 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255156759.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -130.728 kcal (2) G-P(sol) polarization free energy of solvation -63.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -193.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -188.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds