Wall clock time and date at job start Tue Mar 31 2020 13:00:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 109.47038 * 2 1 4 4 H 1.09000 * 109.46804 * 54.32258 * 3 2 1 5 5 C 1.50700 * 109.46844 * 174.31611 * 3 2 1 6 6 H 1.07997 * 119.99896 * 120.00613 * 5 3 2 7 7 C 1.37877 * 119.99940 * 300.00099 * 5 3 2 8 8 N 1.31515 * 119.99950 * 179.97438 * 7 5 3 9 9 Si 1.86795 * 120.00411 * 0.02562 * 7 5 3 10 10 H 1.48501 * 109.47375 * 89.99161 * 9 7 5 11 11 H 1.48498 * 109.47292 * 209.99973 * 9 7 5 12 12 H 1.48500 * 109.46753 * 329.99447 * 9 7 5 13 13 N 1.46898 * 109.47763 * 294.32029 * 3 2 1 14 14 C 1.46896 * 111.00125 * 156.18741 * 13 3 2 15 15 H 1.08997 * 109.47519 * 30.14667 * 14 13 3 16 16 C 1.50702 * 109.46772 * 150.14872 * 14 13 3 17 17 C 1.38262 * 119.94658 * 39.72751 * 16 14 13 18 18 C 1.38145 * 120.05501 * 179.72068 * 17 16 14 19 19 C 1.38735 * 119.94161 * 0.55349 * 18 17 16 20 20 O 1.35899 * 120.05457 * 179.74601 * 19 18 17 21 21 C 1.42903 * 116.99819 * 359.97303 * 20 19 18 22 22 C 1.38726 * 119.88954 * 359.71424 * 19 18 17 23 23 C 1.38146 * 119.94725 * 0.02562 * 22 19 18 24 24 C 1.53006 * 109.46924 * 270.14454 * 14 13 3 25 25 F 1.39900 * 109.46770 * 65.28195 * 24 14 13 26 26 F 1.39899 * 109.46803 * 185.27835 * 24 14 13 27 27 F 1.39895 * 109.47342 * 305.28020 * 24 14 13 28 28 H 1.09002 * 109.46822 * 306.41332 * 1 2 3 29 29 H 1.09000 * 109.46728 * 66.41163 * 1 2 3 30 30 H 1.08999 * 109.46837 * 186.41015 * 1 2 3 31 31 H 1.09001 * 109.46583 * 240.00616 * 2 1 3 32 32 H 1.08999 * 109.47086 * 120.00661 * 2 1 3 33 33 H 0.96999 * 120.00515 * 180.02562 * 8 7 5 34 34 H 1.00900 * 110.99566 * 32.23057 * 13 3 2 35 35 H 1.08003 * 119.97084 * 359.97438 * 17 16 14 36 36 H 1.08000 * 120.02747 * 180.26669 * 18 17 16 37 37 H 1.08993 * 109.47488 * 60.00446 * 21 20 19 38 38 H 1.09011 * 109.46958 * 180.02562 * 21 20 19 39 39 H 1.08994 * 109.47182 * 299.99670 * 21 20 19 40 40 H 1.08001 * 120.02521 * 179.97438 * 22 19 18 41 41 H 1.07999 * 119.97457 * 180.02562 * 23 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5960 1.9848 0.8348 5 6 3.5405 1.4448 0.1407 6 1 4.1544 1.8863 -0.6303 7 6 4.1293 0.8832 1.2538 8 7 5.4387 0.8848 1.3764 9 14 3.0675 0.1190 2.5871 10 1 2.8499 -1.3183 2.2835 11 1 3.7500 0.2500 3.8993 12 1 1.7582 0.8178 2.6382 13 7 1.6656 2.0944 -1.2620 14 6 1.6124 3.5540 -1.1050 15 1 2.3276 3.8639 -0.3432 16 6 1.9574 4.2130 -2.4157 17 6 1.4856 3.6805 -3.6012 18 6 1.7958 4.2861 -4.8035 19 6 2.5908 5.4229 -4.8215 20 8 2.9016 6.0175 -6.0033 21 6 2.3758 5.4179 -7.1892 22 6 3.0675 5.9520 -3.6310 23 6 2.7501 5.3458 -2.4309 24 6 0.2025 3.9702 -0.6805 25 9 -0.0721 3.4564 0.5914 26 9 0.1185 5.3663 -0.6477 27 9 -0.7277 3.4684 -1.5970 28 1 -0.3633 0.6101 0.8271 29 1 -0.3633 0.4112 -0.9418 30 1 -0.3633 -1.0212 0.1147 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 5.8531 0.4894 2.1592 34 1 0.7882 1.7356 -1.6078 35 1 0.8708 2.7927 -3.5870 36 1 1.4234 3.8722 -5.7290 37 1 1.2870 5.4125 -7.1416 38 1 2.6990 5.9896 -8.0593 39 1 2.7411 4.3943 -7.2714 40 1 3.6869 6.8367 -3.6424 41 1 3.1206 5.7576 -1.5038 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255157248.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:00:39 Heat of formation + Delta-G solvation = -159.393042 kcal Electronic energy + Delta-G solvation = -28093.180980 eV Core-core repulsion = 23751.659624 eV Total energy + Delta-G solvation = -4341.521356 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.134 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.83024 -47.33757 -47.28838 -40.07331 -38.04888 -36.55511 -33.37075 -32.00755 -30.95355 -29.87532 -28.03206 -27.02722 -26.35848 -23.35566 -22.71183 -22.23601 -20.77536 -20.07745 -18.23790 -18.18925 -18.04457 -17.62441 -16.66068 -16.15804 -15.75399 -15.61995 -14.96301 -14.50647 -14.30054 -14.12985 -14.01308 -13.75460 -13.69447 -13.51465 -13.47035 -13.41918 -13.20769 -12.90029 -12.72359 -12.44239 -12.26353 -12.07620 -11.86695 -11.74401 -11.56642 -11.06467 -10.91304 -10.68511 -10.57309 -10.35735 -10.14853 -9.51943 -9.34174 -8.83140 -8.59658 -8.02278 -7.83622 -6.10645 -4.09582 1.45924 1.53925 3.07537 3.22104 3.25785 3.34472 3.35298 3.82608 4.14592 4.31242 4.34950 4.36486 4.78823 4.84409 4.98141 5.04034 5.08020 5.15771 5.19590 5.33670 5.53675 5.55984 5.63441 5.69307 5.77544 5.85636 5.90305 6.18145 6.33045 6.40478 6.44981 6.50039 6.56761 6.65690 6.78805 6.84990 6.98951 7.42223 7.54587 7.60133 7.89845 8.58577 9.00902 9.50867 11.02079 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.015138 B = 0.004671 C = 0.004177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1849.242204 B = 5993.346231 C = 6701.550730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.135 4.135 3 C 0.179 3.821 4 H 0.017 0.983 5 C -0.503 4.503 6 H 0.084 0.916 7 C 0.072 3.928 8 N -0.896 5.896 9 Si 0.877 3.123 10 H -0.278 1.278 11 H -0.296 1.296 12 H -0.265 1.265 13 N -0.646 5.646 14 C 0.104 3.896 15 H 0.135 0.865 16 C -0.110 4.110 17 C -0.041 4.041 18 C -0.213 4.213 19 C 0.126 3.874 20 O -0.320 6.320 21 C 0.028 3.972 22 C -0.154 4.154 23 C -0.054 4.054 24 C 0.415 3.585 25 F -0.181 7.181 26 F -0.186 7.186 27 F -0.188 7.188 28 H 0.049 0.951 29 H 0.048 0.952 30 H 0.048 0.952 31 H 0.070 0.930 32 H 0.058 0.942 33 H 0.264 0.736 34 H 0.330 0.670 35 H 0.127 0.873 36 H 0.126 0.874 37 H 0.054 0.946 38 H 0.096 0.904 39 H 0.056 0.944 40 H 0.130 0.870 41 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.129 7.466 -11.039 16.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.173 4.173 3 C 0.071 3.929 4 H 0.035 0.965 5 C -0.541 4.541 6 H 0.102 0.898 7 C -0.130 4.130 8 N -0.534 5.534 9 Si 0.707 3.293 10 H -0.205 1.205 11 H -0.223 1.223 12 H -0.190 1.190 13 N -0.277 5.277 14 C -0.010 4.010 15 H 0.153 0.847 16 C -0.111 4.111 17 C -0.059 4.059 18 C -0.231 4.231 19 C 0.082 3.918 20 O -0.234 6.234 21 C -0.067 4.067 22 C -0.173 4.173 23 C -0.073 4.073 24 C 0.358 3.642 25 F -0.163 7.163 26 F -0.168 7.168 27 F -0.169 7.169 28 H 0.068 0.932 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.089 0.911 32 H 0.076 0.924 33 H 0.074 0.926 34 H 0.151 0.849 35 H 0.145 0.855 36 H 0.144 0.856 37 H 0.072 0.928 38 H 0.115 0.885 39 H 0.074 0.926 40 H 0.148 0.852 41 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -9.244 7.543 -11.193 16.360 hybrid contribution -1.679 -0.708 1.269 2.220 sum -10.923 6.836 -9.924 16.264 Atomic orbital electron populations 1.21948 0.98040 1.00904 1.00865 1.22105 0.93041 0.99911 1.02194 1.19941 0.97609 0.89929 0.85401 0.96533 1.20962 0.88596 1.38420 1.06163 0.89768 1.24917 0.94736 0.95732 0.97649 1.69873 1.08923 1.45313 1.29255 0.87019 0.80987 0.79932 0.81377 1.20469 1.22329 1.18982 1.60682 1.35508 0.98876 1.32630 1.21738 0.89296 0.92322 0.97632 0.84692 1.19306 1.01727 0.96525 0.93522 1.20729 0.96701 0.97612 0.90862 1.21147 1.04607 0.98230 0.99160 1.19041 0.94865 0.92289 0.85646 1.86046 1.71282 1.53015 1.13030 1.23021 0.98933 0.99155 0.85608 1.20305 1.04699 1.02708 0.89584 1.20848 0.95057 0.93754 0.97637 1.22345 0.91926 0.74975 0.74931 1.93186 1.95033 1.86736 1.41315 1.93146 1.97005 1.30356 1.96257 1.93103 1.69527 1.87296 1.67009 0.93229 0.93329 0.93319 0.91110 0.92381 0.92578 0.84932 0.85513 0.85618 0.92769 0.88529 0.92580 0.85181 0.84935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.70 9.62 37.16 0.36 -2.34 16 2 C -0.13 -2.76 5.02 -26.73 -0.13 -2.90 16 3 C 0.18 3.95 1.31 -68.87 -0.09 3.86 16 4 H 0.02 0.39 5.38 -51.93 -0.28 0.11 16 5 C -0.50 -13.43 9.04 -34.44 -0.31 -13.74 16 6 H 0.08 2.49 8.06 -52.49 -0.42 2.07 16 7 C 0.07 1.99 5.45 -17.82 -0.10 1.90 16 8 N -0.90 -26.64 13.96 55.43 0.77 -25.86 16 9 Si 0.88 21.21 24.41 -169.99 -4.15 17.06 16 10 H -0.28 -6.55 6.82 56.52 0.39 -6.16 16 11 H -0.30 -7.24 7.11 56.52 0.40 -6.83 16 12 H -0.26 -6.17 6.53 56.52 0.37 -5.80 16 13 N -0.65 -12.21 5.41 -102.17 -0.55 -12.77 16 14 C 0.10 1.80 2.16 -68.86 -0.15 1.65 16 15 H 0.14 2.53 7.41 -51.93 -0.38 2.15 16 16 C -0.11 -1.75 4.54 -104.60 -0.48 -2.23 16 17 C -0.04 -0.60 8.71 -39.61 -0.35 -0.95 16 18 C -0.21 -2.83 9.04 -39.43 -0.36 -3.18 16 19 C 0.13 1.74 6.69 -39.22 -0.26 1.48 16 20 O -0.32 -4.00 10.50 -19.42 -0.20 -4.20 16 21 C 0.03 0.23 9.81 101.05 0.99 1.23 16 22 C -0.15 -2.15 9.99 -39.43 -0.39 -2.54 16 23 C -0.05 -0.81 9.66 -39.60 -0.38 -1.19 16 24 C 0.41 6.83 2.78 37.16 0.10 6.93 16 25 F -0.18 -3.24 15.61 2.25 0.04 -3.21 16 26 F -0.19 -2.97 16.89 2.25 0.04 -2.93 16 27 F -0.19 -2.92 15.60 2.25 0.04 -2.89 16 28 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.05 0.73 6.68 -51.93 -0.35 0.38 16 30 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 32 H 0.06 1.29 3.21 -51.93 -0.17 1.12 16 33 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 34 H 0.33 5.61 5.10 -39.29 -0.20 5.41 16 35 H 0.13 1.77 7.31 -52.48 -0.38 1.38 16 36 H 0.13 1.34 6.30 -52.49 -0.33 1.01 16 37 H 0.05 0.40 7.66 -51.93 -0.40 0.00 16 38 H 0.10 0.59 8.14 -51.92 -0.42 0.16 16 39 H 0.06 0.44 7.66 -51.93 -0.40 0.04 16 40 H 0.13 1.57 8.06 -52.49 -0.42 1.15 16 41 H 0.13 1.77 8.03 -52.49 -0.42 1.35 16 LS Contribution 338.41 15.07 5.10 5.10 Total: -1.00 -29.86 338.41 -5.50 -35.36 By element: Atomic # 1 Polarization: 11.39 SS G_CDS: -5.03 Total: 6.36 kcal Atomic # 6 Polarization: -10.47 SS G_CDS: -1.55 Total: -12.02 kcal Atomic # 7 Polarization: -38.85 SS G_CDS: 0.22 Total: -38.63 kcal Atomic # 8 Polarization: -4.00 SS G_CDS: -0.20 Total: -4.20 kcal Atomic # 9 Polarization: -9.13 SS G_CDS: 0.11 Total: -9.02 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -4.15 Total: 17.06 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -29.86 -5.50 -35.36 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255157248.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.036 kcal (2) G-P(sol) polarization free energy of solvation -29.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds