Wall clock time and date at job start Tue Mar 31 2020 13:00:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 109.47038 * 2 1 4 4 H 1.09000 * 109.46804 * 54.32258 * 3 2 1 5 5 C 1.50700 * 109.46844 * 174.31611 * 3 2 1 6 6 H 1.07997 * 119.99896 * 120.00613 * 5 3 2 7 7 C 1.37877 * 119.99940 * 300.00099 * 5 3 2 8 8 N 1.31515 * 119.99950 * 179.97438 * 7 5 3 9 9 Si 1.86795 * 120.00411 * 0.02562 * 7 5 3 10 10 H 1.48501 * 109.47375 * 89.99161 * 9 7 5 11 11 H 1.48498 * 109.47292 * 209.99973 * 9 7 5 12 12 H 1.48500 * 109.46753 * 329.99447 * 9 7 5 13 13 N 1.46898 * 109.47763 * 294.32029 * 3 2 1 14 14 C 1.46896 * 111.00125 * 156.18741 * 13 3 2 15 15 H 1.08997 * 109.47519 * 30.14667 * 14 13 3 16 16 C 1.50702 * 109.46772 * 150.14872 * 14 13 3 17 17 C 1.38262 * 119.94658 * 39.72751 * 16 14 13 18 18 C 1.38145 * 120.05501 * 179.72068 * 17 16 14 19 19 C 1.38735 * 119.94161 * 0.55349 * 18 17 16 20 20 O 1.35899 * 120.05457 * 179.74601 * 19 18 17 21 21 C 1.42903 * 116.99819 * 359.97303 * 20 19 18 22 22 C 1.38726 * 119.88954 * 359.71424 * 19 18 17 23 23 C 1.38146 * 119.94725 * 0.02562 * 22 19 18 24 24 C 1.53006 * 109.46924 * 270.14454 * 14 13 3 25 25 F 1.39900 * 109.46770 * 65.28195 * 24 14 13 26 26 F 1.39899 * 109.46803 * 185.27835 * 24 14 13 27 27 F 1.39895 * 109.47342 * 305.28020 * 24 14 13 28 28 H 1.09002 * 109.46822 * 306.41332 * 1 2 3 29 29 H 1.09000 * 109.46728 * 66.41163 * 1 2 3 30 30 H 1.08999 * 109.46837 * 186.41015 * 1 2 3 31 31 H 1.09001 * 109.46583 * 240.00616 * 2 1 3 32 32 H 1.08999 * 109.47086 * 120.00661 * 2 1 3 33 33 H 0.96999 * 120.00515 * 180.02562 * 8 7 5 34 34 H 1.00900 * 110.99566 * 32.23057 * 13 3 2 35 35 H 1.08003 * 119.97084 * 359.97438 * 17 16 14 36 36 H 1.08000 * 120.02747 * 180.26669 * 18 17 16 37 37 H 1.08993 * 109.47488 * 60.00446 * 21 20 19 38 38 H 1.09011 * 109.46958 * 180.02562 * 21 20 19 39 39 H 1.08994 * 109.47182 * 299.99670 * 21 20 19 40 40 H 1.08001 * 120.02521 * 179.97438 * 22 19 18 41 41 H 1.07999 * 119.97457 * 180.02562 * 23 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5960 1.9848 0.8348 5 6 3.5405 1.4448 0.1407 6 1 4.1544 1.8863 -0.6303 7 6 4.1293 0.8832 1.2538 8 7 5.4387 0.8848 1.3764 9 14 3.0675 0.1190 2.5871 10 1 2.8499 -1.3183 2.2835 11 1 3.7500 0.2500 3.8993 12 1 1.7582 0.8178 2.6382 13 7 1.6656 2.0944 -1.2620 14 6 1.6124 3.5540 -1.1050 15 1 2.3276 3.8639 -0.3432 16 6 1.9574 4.2130 -2.4157 17 6 1.4856 3.6805 -3.6012 18 6 1.7958 4.2861 -4.8035 19 6 2.5908 5.4229 -4.8215 20 8 2.9016 6.0175 -6.0033 21 6 2.3758 5.4179 -7.1892 22 6 3.0675 5.9520 -3.6310 23 6 2.7501 5.3458 -2.4309 24 6 0.2025 3.9702 -0.6805 25 9 -0.0721 3.4564 0.5914 26 9 0.1185 5.3663 -0.6477 27 9 -0.7277 3.4684 -1.5970 28 1 -0.3633 0.6101 0.8271 29 1 -0.3633 0.4112 -0.9418 30 1 -0.3633 -1.0212 0.1147 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 5.8531 0.4894 2.1592 34 1 0.7882 1.7356 -1.6078 35 1 0.8708 2.7927 -3.5870 36 1 1.4234 3.8722 -5.7290 37 1 1.2870 5.4125 -7.1416 38 1 2.6990 5.9896 -8.0593 39 1 2.7411 4.3943 -7.2714 40 1 3.6869 6.8367 -3.6424 41 1 3.1206 5.7576 -1.5038 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255157248.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:00:38 Heat of formation + Delta-G solvation = -178.026129 kcal Electronic energy + Delta-G solvation = -28093.988971 eV Core-core repulsion = 23751.659624 eV Total energy + Delta-G solvation = -4342.329347 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.134 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -51.16528 -48.66521 -48.62139 -41.10626 -39.29378 -37.95225 -34.94452 -33.90753 -32.03118 -31.13377 -29.41432 -28.25053 -27.69786 -24.73259 -24.21761 -23.41686 -21.99667 -21.78190 -19.56709 -19.49929 -19.15533 -19.05380 -18.52921 -17.28191 -16.94107 -16.65640 -16.59263 -15.92404 -15.62910 -15.48192 -15.39829 -15.07999 -15.01141 -14.83751 -14.78947 -14.67506 -14.57259 -14.33136 -14.04170 -13.86537 -13.59289 -13.53276 -13.11019 -12.97964 -12.76470 -12.55861 -12.45426 -12.19349 -11.87283 -11.76260 -11.68556 -11.31085 -11.25310 -10.68267 -9.92961 -9.44247 -9.11248 -8.25952 -6.28177 0.32882 0.43611 1.29848 1.36797 1.45064 1.73643 2.32245 2.39239 2.62495 2.76010 2.96779 3.05195 3.09473 3.40327 3.84174 3.88894 3.98417 4.19110 4.23974 4.31194 4.37097 4.40530 4.44309 4.47999 4.58080 4.74735 4.77008 4.79834 4.97516 5.06412 5.09797 5.14124 5.24456 5.34825 5.39621 5.61788 5.67215 5.77418 5.88138 6.23370 6.46257 6.65354 6.80485 7.35909 8.90627 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.015138 B = 0.004671 C = 0.004177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1849.242204 B = 5993.346231 C = 6701.550730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.135 4.135 3 C 0.185 3.815 4 H 0.012 0.988 5 C -0.498 4.498 6 H 0.041 0.959 7 C 0.016 3.984 8 N -0.946 5.946 9 Si 0.937 3.063 10 H -0.265 1.265 11 H -0.301 1.301 12 H -0.249 1.249 13 N -0.648 5.648 14 C 0.108 3.892 15 H 0.113 0.887 16 C -0.131 4.131 17 C -0.049 4.049 18 C -0.210 4.210 19 C 0.125 3.875 20 O -0.332 6.332 21 C 0.017 3.983 22 C -0.163 4.163 23 C -0.067 4.067 24 C 0.423 3.577 25 F -0.189 7.189 26 F -0.182 7.182 27 F -0.178 7.178 28 H 0.046 0.954 29 H 0.066 0.934 30 H 0.072 0.928 31 H 0.069 0.931 32 H 0.043 0.957 33 H 0.264 0.736 34 H 0.343 0.657 35 H 0.134 0.866 36 H 0.154 0.846 37 H 0.066 0.934 38 H 0.120 0.880 39 H 0.062 0.938 40 H 0.144 0.856 41 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.479 7.195 -12.294 18.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.173 4.173 3 C 0.077 3.923 4 H 0.029 0.971 5 C -0.537 4.537 6 H 0.059 0.941 7 C -0.181 4.181 8 N -0.587 5.587 9 Si 0.764 3.236 10 H -0.191 1.191 11 H -0.229 1.229 12 H -0.173 1.173 13 N -0.280 5.280 14 C -0.006 4.006 15 H 0.131 0.869 16 C -0.132 4.132 17 C -0.067 4.067 18 C -0.229 4.229 19 C 0.079 3.921 20 O -0.246 6.246 21 C -0.077 4.077 22 C -0.181 4.181 23 C -0.085 4.085 24 C 0.367 3.633 25 F -0.170 7.170 26 F -0.163 7.163 27 F -0.160 7.160 28 H 0.065 0.935 29 H 0.085 0.915 30 H 0.091 0.909 31 H 0.088 0.912 32 H 0.061 0.939 33 H 0.073 0.927 34 H 0.166 0.834 35 H 0.152 0.848 36 H 0.171 0.829 37 H 0.085 0.915 38 H 0.139 0.861 39 H 0.080 0.920 40 H 0.162 0.838 41 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -11.630 7.281 -12.481 18.548 hybrid contribution -0.893 -0.513 1.468 1.793 sum -12.522 6.768 -11.014 17.998 Atomic orbital electron populations 1.21885 0.94717 1.02666 1.01789 1.22009 0.95997 0.97895 1.01438 1.19697 0.94418 0.91600 0.86631 0.97090 1.21175 0.91030 1.36818 1.04652 0.94114 1.25683 0.95723 0.96564 1.00125 1.70027 1.10976 1.47353 1.30305 0.86033 0.79738 0.79811 0.77981 1.19063 1.22913 1.17286 1.60500 1.36611 0.99814 1.31107 1.21583 0.89454 0.91409 0.98130 0.86949 1.19298 1.03326 0.97396 0.93209 1.20873 0.96959 0.97965 0.90944 1.21413 1.03946 0.97802 0.99717 1.19195 0.94372 0.92263 0.86231 1.86041 1.71540 1.53489 1.13529 1.23360 0.99837 0.99869 0.84654 1.20516 1.04852 1.03207 0.89545 1.20985 0.95218 0.93884 0.98441 1.22045 0.91501 0.75128 0.74669 1.93170 1.95051 1.86882 1.41928 1.93153 1.96959 1.30009 1.96223 1.93117 1.69068 1.87183 1.66603 0.93512 0.91520 0.90892 0.91205 0.93852 0.92655 0.83415 0.84787 0.82855 0.91491 0.86141 0.91983 0.83777 0.84589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.64 9.62 71.98 0.69 -3.95 16 2 C -0.14 -5.31 5.02 30.60 0.15 -5.16 16 3 C 0.19 8.10 1.31 44.17 0.06 8.16 16 4 H 0.01 0.52 5.38 -2.39 -0.01 0.51 16 5 C -0.50 -27.36 9.04 25.60 0.23 -27.12 16 6 H 0.04 2.54 8.06 -2.91 -0.02 2.51 16 7 C 0.02 0.93 5.45 84.65 0.46 1.39 16 8 N -0.95 -58.25 13.96 21.45 0.30 -57.95 16 9 Si 0.94 43.91 24.41 68.60 1.67 45.58 16 10 H -0.26 -11.76 6.82 99.48 0.68 -11.08 16 11 H -0.30 -14.27 7.11 99.48 0.71 -13.56 16 12 H -0.25 -10.90 6.53 99.48 0.65 -10.25 16 13 N -0.65 -24.18 5.41 -477.16 -2.58 -26.76 16 14 C 0.11 3.74 2.16 44.17 0.10 3.84 16 15 H 0.11 4.39 7.41 -2.39 -0.02 4.38 16 16 C -0.13 -4.17 4.54 -19.85 -0.09 -4.26 16 17 C -0.05 -1.39 8.71 22.25 0.19 -1.19 16 18 C -0.21 -5.17 9.04 22.37 0.20 -4.97 16 19 C 0.12 3.26 6.69 22.51 0.15 3.41 16 20 O -0.33 -7.63 10.50 -92.41 -0.97 -8.60 16 21 C 0.02 0.24 9.81 113.37 1.11 1.35 16 22 C -0.16 -4.44 9.99 22.36 0.22 -4.22 16 23 C -0.07 -2.00 9.66 22.26 0.22 -1.78 16 24 C 0.42 13.50 2.78 71.98 0.20 13.70 16 25 F -0.19 -6.52 15.61 44.97 0.70 -5.82 16 26 F -0.18 -5.65 16.89 44.97 0.76 -4.89 16 27 F -0.18 -5.18 15.60 44.97 0.70 -4.48 16 28 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 29 H 0.07 1.76 6.68 -2.39 -0.02 1.75 16 30 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 31 H 0.07 2.72 8.14 -2.39 -0.02 2.70 16 32 H 0.04 1.83 3.21 -2.39 -0.01 1.82 16 33 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 34 H 0.34 11.06 5.10 -89.69 -0.46 10.61 16 35 H 0.13 3.49 7.31 -2.91 -0.02 3.47 16 36 H 0.15 2.81 6.30 -2.91 -0.02 2.79 16 37 H 0.07 0.77 7.66 -2.39 -0.02 0.76 16 38 H 0.12 1.09 8.14 -2.38 -0.02 1.07 16 39 H 0.06 0.80 7.66 -2.39 -0.02 0.78 16 40 H 0.14 3.39 8.06 -2.91 -0.02 3.36 16 41 H 0.14 3.79 8.03 -2.91 -0.02 3.77 16 Total: -1.00 -65.49 338.41 5.01 -60.48 By element: Atomic # 1 Polarization: 22.71 SS G_CDS: 0.53 Total: 23.24 kcal Atomic # 6 Polarization: -24.71 SS G_CDS: 3.90 Total: -20.81 kcal Atomic # 7 Polarization: -82.43 SS G_CDS: -2.28 Total: -84.72 kcal Atomic # 8 Polarization: -7.63 SS G_CDS: -0.97 Total: -8.60 kcal Atomic # 9 Polarization: -17.35 SS G_CDS: 2.16 Total: -15.19 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 1.67 Total: 45.58 kcal Total: -65.49 5.01 -60.48 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255157248.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.548 kcal (2) G-P(sol) polarization free energy of solvation -65.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -183.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds