Wall clock time and date at job start Tue Mar 31 2020 13:00:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53008 * 109.46714 * 2 1 4 4 H 1.08995 * 109.46967 * 305.23528 * 3 2 1 5 5 C 1.50702 * 109.46861 * 185.23363 * 3 2 1 6 6 H 1.07998 * 120.00319 * 239.99700 * 5 3 2 7 7 C 1.37879 * 119.99779 * 60.00504 * 5 3 2 8 8 N 1.31516 * 120.00123 * 359.97438 * 7 5 3 9 9 Si 1.86792 * 120.00033 * 179.97438 * 7 5 3 10 10 H 1.48496 * 109.47462 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47592 * 119.99952 * 9 7 5 12 12 H 1.48502 * 109.47214 * 239.99537 * 9 7 5 13 13 N 1.46904 * 109.46915 * 65.24050 * 3 2 1 14 14 C 1.46901 * 110.99663 * 206.11954 * 13 3 2 15 15 H 1.09002 * 109.47328 * 328.79023 * 14 13 3 16 16 C 1.50698 * 109.46889 * 208.79389 * 14 13 3 17 17 C 1.38266 * 119.94355 * 319.72087 * 16 14 13 18 18 C 1.38149 * 120.05180 * 179.72965 * 17 16 14 19 19 C 1.38724 * 119.94750 * 0.54562 * 18 17 16 20 20 O 1.35897 * 120.06023 * 179.74819 * 19 18 17 21 21 C 1.42898 * 116.99712 * 359.97438 * 20 19 18 22 22 C 1.38739 * 119.89012 * 359.72894 * 19 18 17 23 23 C 1.38145 * 119.94104 * 0.02562 * 22 19 18 24 24 C 1.53003 * 109.47553 * 88.79074 * 14 13 3 25 25 F 1.39899 * 109.47302 * 175.39622 * 24 14 13 26 26 F 1.39903 * 109.46870 * 295.39759 * 24 14 13 27 27 F 1.39901 * 109.46563 * 55.39543 * 24 14 13 28 28 H 1.09001 * 109.47560 * 64.67874 * 1 2 3 29 29 H 1.09002 * 109.47083 * 184.67969 * 1 2 3 30 30 H 1.08999 * 109.47331 * 304.68070 * 1 2 3 31 31 H 1.08991 * 109.47093 * 240.00539 * 2 1 3 32 32 H 1.08994 * 109.47335 * 119.99397 * 2 1 3 33 33 H 0.96995 * 120.00487 * 180.02562 * 8 7 5 34 34 H 1.00896 * 111.00254 * 82.16487 * 13 3 2 35 35 H 1.07999 * 119.97313 * 0.02562 * 17 16 14 36 36 H 1.08002 * 120.02429 * 180.27812 * 18 17 16 37 37 H 1.09000 * 109.47057 * 299.99420 * 21 20 19 38 38 H 1.09004 * 109.47551 * 59.99557 * 21 20 19 39 39 H 1.09002 * 109.47253 * 180.02562 * 21 20 19 40 40 H 1.07997 * 120.03235 * 179.97438 * 22 19 18 41 41 H 1.07994 * 119.97328 * 180.02562 * 23 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6020 1.9827 -0.8394 5 6 3.5414 1.4446 -0.1296 6 1 4.1497 1.8882 0.6447 7 6 4.1385 0.8803 -1.2369 8 7 3.3977 0.3398 -2.1797 9 14 5.9994 0.8834 -1.3980 10 1 6.5978 1.5478 -0.2124 11 1 6.4913 -0.5152 -1.4830 12 1 6.3887 1.6205 -2.6269 13 7 1.6562 2.0976 1.2577 14 6 1.5508 3.5523 1.0828 15 1 2.2603 3.8793 0.3226 16 6 1.8610 4.2389 2.3879 17 6 1.3901 3.7096 3.5752 18 6 1.6779 4.3341 4.7734 19 6 2.4305 5.4994 4.7838 20 8 2.7106 6.1185 5.9607 21 6 2.1976 5.5141 7.1496 22 6 2.8971 6.0317 3.5905 23 6 2.6109 5.4007 2.3954 24 6 0.1301 3.9115 0.6426 25 9 -0.0001 5.3029 0.5775 26 9 -0.1207 3.3601 -0.6185 27 9 -0.7876 3.3999 1.5663 28 1 -0.3634 0.4395 -0.9289 29 1 -0.3633 -1.0243 0.0838 30 1 -0.3634 0.5847 0.8451 31 1 1.8933 -0.5137 -0.8900 32 1 1.8934 -0.5137 0.8900 33 1 3.8177 -0.0575 -2.9585 34 1 2.3034 1.8682 1.9970 35 1 0.8008 2.8046 3.5664 36 1 1.3136 3.9178 5.7010 37 1 1.1100 5.4690 7.0941 38 1 2.5986 4.5052 7.2466 39 1 2.4925 6.1075 8.0152 40 1 3.4829 6.9390 3.5958 41 1 2.9742 5.8143 1.4663 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255157249.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:00:43 Heat of formation + Delta-G solvation = -171.649961 kcal Electronic energy + Delta-G solvation = -28010.759873 eV Core-core repulsion = 23668.707017 eV Total energy + Delta-G solvation = -4342.052856 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.134 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.44738 -46.99603 -46.87760 -40.16162 -38.04223 -36.14055 -33.27150 -31.54817 -31.02921 -29.73658 -27.93197 -26.86360 -25.80293 -23.24268 -22.84449 -22.13079 -20.74759 -19.62504 -18.21526 -17.93201 -17.83421 -17.03635 -16.42345 -16.15230 -15.82219 -15.28818 -14.84014 -14.50793 -14.08370 -13.79200 -13.75130 -13.58237 -13.38085 -13.29358 -13.26847 -13.10354 -13.03399 -12.74779 -12.71725 -12.38667 -12.03346 -11.80755 -11.49713 -11.25302 -11.05787 -10.96837 -10.93838 -10.76833 -10.66876 -10.21810 -9.64420 -9.60331 -9.17916 -8.92434 -8.43990 -8.12639 -7.65236 -6.07911 -4.21253 1.37278 1.44378 3.18303 3.22113 3.31393 3.33624 3.35904 3.81893 4.32094 4.40931 4.49645 4.69906 4.79589 4.90825 4.98795 5.03221 5.13156 5.21350 5.28256 5.38674 5.48803 5.55550 5.71707 5.88127 6.12949 6.26588 6.37650 6.39545 6.50977 6.65458 6.71478 6.76625 7.01985 7.15178 7.28303 7.34401 7.48252 7.69457 7.86642 7.99137 8.13798 8.42454 8.88116 9.47009 10.93217 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.012385 B = 0.004904 C = 0.004106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2260.239799 B = 5708.157024 C = 6818.014691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.103 4.103 3 C 0.205 3.795 4 H 0.047 0.953 5 C -0.551 4.551 6 H 0.056 0.944 7 C 0.071 3.929 8 N -0.880 5.880 9 Si 0.889 3.111 10 H -0.274 1.274 11 H -0.283 1.283 12 H -0.284 1.284 13 N -0.671 5.671 14 C 0.097 3.903 15 H 0.099 0.901 16 C -0.132 4.132 17 C -0.047 4.047 18 C -0.212 4.212 19 C 0.128 3.872 20 O -0.320 6.320 21 C 0.028 3.972 22 C -0.156 4.156 23 C -0.056 4.056 24 C 0.459 3.541 25 F -0.194 7.194 26 F -0.177 7.177 27 F -0.180 7.180 28 H 0.038 0.962 29 H 0.025 0.975 30 H 0.049 0.951 31 H 0.093 0.907 32 H 0.031 0.969 33 H 0.262 0.738 34 H 0.348 0.652 35 H 0.139 0.861 36 H 0.128 0.872 37 H 0.055 0.945 38 H 0.056 0.944 39 H 0.097 0.903 40 H 0.130 0.870 41 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.109 8.614 12.720 15.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.142 4.142 3 C 0.098 3.902 4 H 0.065 0.935 5 C -0.590 4.590 6 H 0.074 0.926 7 C -0.133 4.133 8 N -0.518 5.518 9 Si 0.717 3.283 10 H -0.199 1.199 11 H -0.209 1.209 12 H -0.210 1.210 13 N -0.303 5.303 14 C -0.016 4.016 15 H 0.117 0.883 16 C -0.133 4.133 17 C -0.065 4.065 18 C -0.231 4.231 19 C 0.083 3.917 20 O -0.234 6.234 21 C -0.068 4.068 22 C -0.174 4.174 23 C -0.074 4.074 24 C 0.404 3.596 25 F -0.176 7.176 26 F -0.158 7.158 27 F -0.162 7.162 28 H 0.057 0.943 29 H 0.044 0.956 30 H 0.068 0.932 31 H 0.111 0.889 32 H 0.050 0.950 33 H 0.072 0.928 34 H 0.168 0.832 35 H 0.157 0.843 36 H 0.145 0.855 37 H 0.073 0.927 38 H 0.074 0.926 39 H 0.115 0.885 40 H 0.148 0.852 41 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -4.692 8.560 12.472 15.838 hybrid contribution 1.616 -0.016 -0.222 1.631 sum -3.076 8.544 12.250 15.249 Atomic orbital electron populations 1.21734 0.98838 0.98592 1.00595 1.21468 0.92209 0.98667 1.01853 1.19472 0.93450 0.91875 0.85371 0.93530 1.21826 0.92294 1.39089 1.05813 0.92577 1.24906 0.97990 0.94780 0.95601 1.69884 1.34821 1.37764 1.09302 0.86590 0.85874 0.77814 0.78024 1.19876 1.20923 1.20978 1.60824 1.55707 1.01836 1.11969 1.21184 0.90450 0.93881 0.96065 0.88290 1.19591 1.02449 0.97161 0.94111 1.20960 0.96070 0.98841 0.90627 1.21205 1.04906 0.97596 0.99360 1.19074 0.94984 0.91902 0.85756 1.86047 1.72935 1.51163 1.13223 1.23035 0.99132 0.99137 0.85452 1.20326 1.05032 1.02434 0.89640 1.20899 0.95368 0.93532 0.97613 1.20765 0.90406 0.73318 0.75159 1.93117 1.96757 1.31382 1.96315 1.93181 1.95252 1.85306 1.42070 1.93113 1.69803 1.86944 1.66316 0.94309 0.95552 0.93232 0.88894 0.95015 0.92777 0.83200 0.84330 0.85456 0.92650 0.92568 0.88474 0.85198 0.84998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.87 9.86 37.16 0.37 -2.50 16 2 C -0.10 -2.39 5.45 -26.73 -0.15 -2.53 16 3 C 0.21 4.77 1.63 -68.86 -0.11 4.66 16 4 H 0.05 1.21 6.24 -51.93 -0.32 0.88 16 5 C -0.55 -14.01 8.34 -34.44 -0.29 -14.30 16 6 H 0.06 1.42 7.72 -52.49 -0.41 1.01 16 7 C 0.07 1.85 5.29 -17.82 -0.09 1.76 16 8 N -0.88 -24.03 11.29 55.43 0.63 -23.41 16 9 Si 0.89 20.46 29.54 -169.99 -5.02 15.44 16 10 H -0.27 -6.27 7.11 56.52 0.40 -5.86 16 11 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 12 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 13 N -0.67 -12.98 4.73 -102.16 -0.48 -13.46 16 14 C 0.10 1.73 2.17 -68.86 -0.15 1.58 16 15 H 0.10 1.89 7.50 -51.93 -0.39 1.50 16 16 C -0.13 -2.06 4.32 -104.60 -0.45 -2.51 16 17 C -0.05 -0.67 8.28 -39.60 -0.33 -1.00 16 18 C -0.21 -2.70 9.04 -39.43 -0.36 -3.06 16 19 C 0.13 1.68 6.69 -39.22 -0.26 1.42 16 20 O -0.32 -3.83 10.50 -19.42 -0.20 -4.03 16 21 C 0.03 0.22 9.81 101.05 0.99 1.21 16 22 C -0.16 -2.07 9.99 -39.43 -0.39 -2.46 16 23 C -0.06 -0.79 9.66 -39.60 -0.38 -1.17 16 24 C 0.46 8.28 2.83 37.16 0.11 8.39 16 25 F -0.19 -3.32 16.91 2.25 0.04 -3.28 16 26 F -0.18 -3.56 15.53 2.25 0.03 -3.52 16 27 F -0.18 -3.22 16.30 2.25 0.04 -3.18 16 28 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.05 0.98 7.64 -51.93 -0.40 0.59 16 31 H 0.09 2.41 5.95 -51.93 -0.31 2.10 16 32 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 34 H 0.35 6.60 7.50 -39.29 -0.29 6.30 16 35 H 0.14 1.97 7.60 -52.49 -0.40 1.58 16 36 H 0.13 1.31 6.30 -52.49 -0.33 0.97 16 37 H 0.05 0.39 7.66 -51.93 -0.40 0.00 16 38 H 0.06 0.41 7.66 -51.93 -0.40 0.01 16 39 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.13 1.49 8.06 -52.49 -0.42 1.07 16 41 H 0.13 1.70 8.03 -52.49 -0.42 1.28 16 LS Contribution 348.20 15.07 5.25 5.25 Total: -1.00 -27.64 348.20 -6.54 -34.18 By element: Atomic # 1 Polarization: 11.85 SS G_CDS: -5.31 Total: 6.53 kcal Atomic # 6 Polarization: -9.01 SS G_CDS: -1.50 Total: -10.51 kcal Atomic # 7 Polarization: -37.01 SS G_CDS: 0.14 Total: -36.87 kcal Atomic # 8 Polarization: -3.83 SS G_CDS: -0.20 Total: -4.03 kcal Atomic # 9 Polarization: -10.09 SS G_CDS: 0.11 Total: -9.98 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -27.64 -6.54 -34.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255157249.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -137.469 kcal (2) G-P(sol) polarization free energy of solvation -27.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds