Wall clock time and date at job start Tue Mar 31 2020 13:00:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53008 * 109.46714 * 2 1 4 4 H 1.08995 * 109.46967 * 305.23528 * 3 2 1 5 5 C 1.50702 * 109.46861 * 185.23363 * 3 2 1 6 6 H 1.07998 * 120.00319 * 239.99700 * 5 3 2 7 7 C 1.37879 * 119.99779 * 60.00504 * 5 3 2 8 8 N 1.31516 * 120.00123 * 359.97438 * 7 5 3 9 9 Si 1.86792 * 120.00033 * 179.97438 * 7 5 3 10 10 H 1.48496 * 109.47462 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47592 * 119.99952 * 9 7 5 12 12 H 1.48502 * 109.47214 * 239.99537 * 9 7 5 13 13 N 1.46904 * 109.46915 * 65.24050 * 3 2 1 14 14 C 1.46901 * 110.99663 * 206.11954 * 13 3 2 15 15 H 1.09002 * 109.47328 * 328.79023 * 14 13 3 16 16 C 1.50698 * 109.46889 * 208.79389 * 14 13 3 17 17 C 1.38266 * 119.94355 * 319.72087 * 16 14 13 18 18 C 1.38149 * 120.05180 * 179.72965 * 17 16 14 19 19 C 1.38724 * 119.94750 * 0.54562 * 18 17 16 20 20 O 1.35897 * 120.06023 * 179.74819 * 19 18 17 21 21 C 1.42898 * 116.99712 * 359.97438 * 20 19 18 22 22 C 1.38739 * 119.89012 * 359.72894 * 19 18 17 23 23 C 1.38145 * 119.94104 * 0.02562 * 22 19 18 24 24 C 1.53003 * 109.47553 * 88.79074 * 14 13 3 25 25 F 1.39899 * 109.47302 * 175.39622 * 24 14 13 26 26 F 1.39903 * 109.46870 * 295.39759 * 24 14 13 27 27 F 1.39901 * 109.46563 * 55.39543 * 24 14 13 28 28 H 1.09001 * 109.47560 * 64.67874 * 1 2 3 29 29 H 1.09002 * 109.47083 * 184.67969 * 1 2 3 30 30 H 1.08999 * 109.47331 * 304.68070 * 1 2 3 31 31 H 1.08991 * 109.47093 * 240.00539 * 2 1 3 32 32 H 1.08994 * 109.47335 * 119.99397 * 2 1 3 33 33 H 0.96995 * 120.00487 * 180.02562 * 8 7 5 34 34 H 1.00896 * 111.00254 * 82.16487 * 13 3 2 35 35 H 1.07999 * 119.97313 * 0.02562 * 17 16 14 36 36 H 1.08002 * 120.02429 * 180.27812 * 18 17 16 37 37 H 1.09000 * 109.47057 * 299.99420 * 21 20 19 38 38 H 1.09004 * 109.47551 * 59.99557 * 21 20 19 39 39 H 1.09002 * 109.47253 * 180.02562 * 21 20 19 40 40 H 1.07997 * 120.03235 * 179.97438 * 22 19 18 41 41 H 1.07994 * 119.97328 * 180.02562 * 23 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6020 1.9827 -0.8394 5 6 3.5414 1.4446 -0.1296 6 1 4.1497 1.8882 0.6447 7 6 4.1385 0.8803 -1.2369 8 7 3.3977 0.3398 -2.1797 9 14 5.9994 0.8834 -1.3980 10 1 6.5978 1.5478 -0.2124 11 1 6.4913 -0.5152 -1.4830 12 1 6.3887 1.6205 -2.6269 13 7 1.6562 2.0976 1.2577 14 6 1.5508 3.5523 1.0828 15 1 2.2603 3.8793 0.3226 16 6 1.8610 4.2389 2.3879 17 6 1.3901 3.7096 3.5752 18 6 1.6779 4.3341 4.7734 19 6 2.4305 5.4994 4.7838 20 8 2.7106 6.1185 5.9607 21 6 2.1976 5.5141 7.1496 22 6 2.8971 6.0317 3.5905 23 6 2.6109 5.4007 2.3954 24 6 0.1301 3.9115 0.6426 25 9 -0.0001 5.3029 0.5775 26 9 -0.1207 3.3601 -0.6185 27 9 -0.7876 3.3999 1.5663 28 1 -0.3634 0.4395 -0.9289 29 1 -0.3633 -1.0243 0.0838 30 1 -0.3634 0.5847 0.8451 31 1 1.8933 -0.5137 -0.8900 32 1 1.8934 -0.5137 0.8900 33 1 3.8177 -0.0575 -2.9585 34 1 2.3034 1.8682 1.9970 35 1 0.8008 2.8046 3.5664 36 1 1.3136 3.9178 5.7010 37 1 1.1100 5.4690 7.0941 38 1 2.5986 4.5052 7.2466 39 1 2.4925 6.1075 8.0152 40 1 3.4829 6.9390 3.5958 41 1 2.9742 5.8143 1.4663 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255157249.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:00:42 Heat of formation + Delta-G solvation = -186.191854 kcal Electronic energy + Delta-G solvation = -28011.390457 eV Core-core repulsion = 23668.707017 eV Total energy + Delta-G solvation = -4342.683440 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.134 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -50.92461 -48.47060 -48.36679 -41.15141 -39.20172 -37.65882 -34.91114 -33.36564 -32.06018 -31.08704 -29.17384 -27.87216 -27.55597 -24.84856 -24.17632 -23.32741 -22.03324 -21.39448 -19.47219 -19.34355 -19.06596 -18.72071 -18.04880 -17.22603 -16.66344 -16.64419 -16.60569 -15.66072 -15.48449 -15.31968 -15.24910 -14.95706 -14.85361 -14.66023 -14.61773 -14.56563 -14.35977 -14.22466 -13.92967 -13.79946 -13.27804 -13.17470 -12.96264 -12.90773 -12.75035 -12.57142 -12.33060 -12.03370 -11.93349 -11.74812 -11.49844 -11.38621 -11.03787 -10.43788 -9.96519 -9.38070 -9.14469 -8.06399 -6.26645 0.29127 0.39434 1.38978 1.43055 1.51729 1.92185 2.36909 2.41338 2.69475 2.91091 3.11874 3.17952 3.27252 3.75003 3.84458 3.95231 3.99534 4.30845 4.37220 4.43559 4.46519 4.56325 4.62559 4.71376 4.76881 4.78171 4.93542 5.08498 5.16908 5.21097 5.34839 5.41178 5.47388 5.57603 5.63962 5.73780 5.77308 6.07024 6.09812 6.26549 6.43416 6.63232 6.94482 7.44640 8.92510 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.012385 B = 0.004904 C = 0.004106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2260.239799 B = 5708.157024 C = 6818.014691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.100 4.100 3 C 0.214 3.786 4 H 0.018 0.982 5 C -0.558 4.558 6 H 0.055 0.945 7 C 0.025 3.975 8 N -0.908 5.908 9 Si 0.948 3.052 10 H -0.269 1.269 11 H -0.282 1.282 12 H -0.284 1.284 13 N -0.661 5.661 14 C 0.104 3.896 15 H 0.082 0.918 16 C -0.151 4.151 17 C -0.052 4.052 18 C -0.208 4.208 19 C 0.129 3.871 20 O -0.331 6.331 21 C 0.017 3.983 22 C -0.161 4.161 23 C -0.062 4.062 24 C 0.460 3.540 25 F -0.187 7.187 26 F -0.192 7.192 27 F -0.177 7.177 28 H 0.026 0.974 29 H 0.046 0.954 30 H 0.055 0.945 31 H 0.063 0.937 32 H 0.033 0.967 33 H 0.262 0.738 34 H 0.352 0.648 35 H 0.138 0.862 36 H 0.154 0.846 37 H 0.065 0.935 38 H 0.064 0.936 39 H 0.120 0.880 40 H 0.146 0.854 41 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.795 9.263 14.911 17.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.139 4.139 3 C 0.106 3.894 4 H 0.036 0.964 5 C -0.597 4.597 6 H 0.073 0.927 7 C -0.176 4.176 8 N -0.547 5.547 9 Si 0.775 3.225 10 H -0.194 1.194 11 H -0.208 1.208 12 H -0.210 1.210 13 N -0.292 5.292 14 C -0.009 4.009 15 H 0.099 0.901 16 C -0.152 4.152 17 C -0.070 4.070 18 C -0.227 4.227 19 C 0.083 3.917 20 O -0.245 6.245 21 C -0.078 4.078 22 C -0.179 4.179 23 C -0.081 4.081 24 C 0.405 3.595 25 F -0.169 7.169 26 F -0.173 7.173 27 F -0.159 7.159 28 H 0.045 0.955 29 H 0.065 0.935 30 H 0.074 0.926 31 H 0.081 0.919 32 H 0.052 0.948 33 H 0.071 0.929 34 H 0.172 0.828 35 H 0.155 0.845 36 H 0.171 0.829 37 H 0.084 0.916 38 H 0.082 0.918 39 H 0.139 0.861 40 H 0.164 0.836 41 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -4.383 9.220 14.689 17.888 hybrid contribution 1.493 -0.144 -0.788 1.694 sum -2.890 9.076 13.901 16.852 Atomic orbital electron populations 1.21589 0.96804 0.99896 1.00192 1.21334 0.93977 0.98153 1.00392 1.19201 0.92190 0.91992 0.86043 0.96414 1.22121 0.93558 1.38408 1.05604 0.92688 1.25593 1.01732 0.94751 0.95533 1.70011 1.36267 1.38650 1.09749 0.85665 0.81382 0.77627 0.77865 1.19366 1.20811 1.21014 1.60666 1.55344 1.02971 1.10232 1.21059 0.89796 0.92864 0.97146 0.90061 1.19461 1.04390 0.98140 0.93207 1.20990 0.96231 0.98987 0.90838 1.21428 1.04264 0.97246 0.99737 1.19222 0.94312 0.91793 0.86371 1.86046 1.73095 1.51623 1.13725 1.23369 0.99863 1.00007 0.84521 1.20536 1.05031 1.02921 0.89451 1.21007 0.95279 0.93302 0.98511 1.20785 0.90599 0.73552 0.74572 1.93124 1.96736 1.30766 1.96251 1.93156 1.95370 1.85618 1.43187 1.93112 1.69708 1.86958 1.66077 0.95498 0.93535 0.92553 0.91855 0.94828 0.92900 0.82776 0.84458 0.82861 0.91648 0.91758 0.86137 0.83590 0.84418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.16 9.86 71.98 0.71 -4.45 16 2 C -0.10 -4.65 5.45 30.60 0.17 -4.48 16 3 C 0.21 10.10 1.63 44.17 0.07 10.17 16 4 H 0.02 0.95 6.24 -2.39 -0.01 0.94 16 5 C -0.56 -28.62 8.34 25.60 0.21 -28.40 16 6 H 0.05 2.78 7.72 -2.91 -0.02 2.75 16 7 C 0.02 1.29 5.29 84.65 0.45 1.74 16 8 N -0.91 -50.56 11.29 21.45 0.24 -50.31 16 9 Si 0.95 42.18 29.54 68.60 2.03 44.21 16 10 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 11 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 12 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 13 N -0.66 -25.55 4.73 -477.13 -2.26 -27.81 16 14 C 0.10 3.72 2.17 44.17 0.10 3.82 16 15 H 0.08 3.19 7.50 -2.39 -0.02 3.18 16 16 C -0.15 -4.59 4.32 -19.85 -0.09 -4.68 16 17 C -0.05 -1.42 8.28 22.26 0.18 -1.23 16 18 C -0.21 -4.80 9.04 22.37 0.20 -4.60 16 19 C 0.13 3.09 6.69 22.51 0.15 3.24 16 20 O -0.33 -7.01 10.50 -92.39 -0.97 -7.98 16 21 C 0.02 0.21 9.81 113.37 1.11 1.32 16 22 C -0.16 -3.99 9.99 22.37 0.22 -3.77 16 23 C -0.06 -1.72 9.66 22.26 0.22 -1.51 16 24 C 0.46 16.62 2.83 71.98 0.20 16.82 16 25 F -0.19 -6.34 16.91 44.97 0.76 -5.58 16 26 F -0.19 -7.87 15.53 44.97 0.70 -7.17 16 27 F -0.18 -6.20 16.30 44.97 0.73 -5.47 16 28 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 30 H 0.06 2.18 7.64 -2.39 -0.02 2.16 16 31 H 0.06 3.35 5.95 -2.39 -0.01 3.34 16 32 H 0.03 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.26 13.94 8.31 -92.71 -0.77 13.17 16 34 H 0.35 13.21 7.50 -89.70 -0.67 12.54 16 35 H 0.14 3.72 7.60 -2.91 -0.02 3.70 16 36 H 0.15 2.64 6.30 -2.91 -0.02 2.62 16 37 H 0.06 0.71 7.66 -2.39 -0.02 0.69 16 38 H 0.06 0.72 7.66 -2.39 -0.02 0.70 16 39 H 0.12 0.95 8.14 -2.39 -0.02 0.93 16 40 H 0.15 3.06 8.06 -2.91 -0.02 3.03 16 41 H 0.14 3.50 8.03 -2.91 -0.02 3.47 16 Total: -1.00 -58.74 348.20 5.53 -53.20 By element: Atomic # 1 Polarization: 22.52 SS G_CDS: 0.39 Total: 22.91 kcal Atomic # 6 Polarization: -19.92 SS G_CDS: 3.91 Total: -16.01 kcal Atomic # 7 Polarization: -76.11 SS G_CDS: -2.02 Total: -78.12 kcal Atomic # 8 Polarization: -7.01 SS G_CDS: -0.97 Total: -7.98 kcal Atomic # 9 Polarization: -20.41 SS G_CDS: 2.19 Total: -18.21 kcal Atomic # 14 Polarization: 42.18 SS G_CDS: 2.03 Total: 44.21 kcal Total: -58.74 5.53 -53.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255157249.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -132.988 kcal (2) G-P(sol) polarization free energy of solvation -58.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -191.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -186.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds