Wall clock time and date at job start Tue Mar 31 2020 13:00:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47221 * 2 1 4 4 H 1.09001 * 109.46950 * 54.58288 * 3 2 1 5 5 C 1.50701 * 109.47291 * 174.58309 * 3 2 1 6 6 H 1.08000 * 120.00181 * 121.14755 * 5 3 2 7 7 C 1.37883 * 119.99515 * 301.14606 * 5 3 2 8 8 N 1.31517 * 119.99546 * 165.25501 * 7 5 3 9 9 Si 1.86798 * 120.00248 * 344.98262 * 7 5 3 10 10 H 1.48503 * 109.47087 * 264.90705 * 9 7 5 11 11 H 1.48503 * 109.47055 * 24.90825 * 9 7 5 12 12 H 1.48503 * 109.46992 * 144.91090 * 9 7 5 13 13 N 1.46902 * 109.47171 * 294.58477 * 3 2 1 14 14 C 1.46903 * 111.00188 * 101.96618 * 13 3 2 15 15 H 1.09005 * 109.46741 * 334.54851 * 14 13 3 16 16 C 1.50699 * 109.46855 * 214.55325 * 14 13 3 17 17 C 1.38268 * 119.94401 * 319.72318 * 16 14 13 18 18 C 1.38143 * 120.05410 * 179.73288 * 17 16 14 19 19 C 1.38729 * 119.94395 * 0.54287 * 18 17 16 20 20 O 1.35901 * 120.05716 * 179.75414 * 19 18 17 21 21 C 1.42901 * 117.00045 * 359.97438 * 20 19 18 22 22 C 1.38735 * 119.88832 * 359.72773 * 19 18 17 23 23 C 1.38144 * 119.94561 * 0.02562 * 22 19 18 24 24 C 1.52997 * 109.47127 * 94.55070 * 14 13 3 25 25 F 1.39896 * 109.47386 * 59.99866 * 24 14 13 26 26 F 1.39905 * 109.46947 * 180.02562 * 24 14 13 27 27 F 1.39904 * 109.47110 * 299.99921 * 24 14 13 28 28 H 1.08997 * 109.46982 * 305.41754 * 1 2 3 29 29 H 1.09000 * 109.47078 * 65.41698 * 1 2 3 30 30 H 1.09000 * 109.47045 * 185.41454 * 1 2 3 31 31 H 1.08999 * 109.46802 * 240.00286 * 2 1 3 32 32 H 1.09000 * 109.47251 * 120.00122 * 2 1 3 33 33 H 0.96994 * 119.99752 * 179.71890 * 8 7 5 34 34 H 1.00904 * 110.99741 * 225.91854 * 13 3 2 35 35 H 1.08003 * 119.96951 * 0.02562 * 17 16 14 36 36 H 1.08000 * 120.02934 * 180.27043 * 18 17 16 37 37 H 1.08995 * 109.47538 * 179.97438 * 21 20 19 38 38 H 1.08995 * 109.47387 * 300.00760 * 21 20 19 39 39 H 1.09003 * 109.46776 * 60.00485 * 21 20 19 40 40 H 1.08004 * 120.02859 * 179.97438 * 22 19 18 41 41 H 1.07994 * 119.97281 * 180.02562 * 23 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5996 1.9836 0.8375 5 6 3.5411 1.4446 0.1341 6 1 4.1509 1.9037 -0.6299 7 6 4.1358 0.8604 1.2324 8 7 5.4250 0.6003 1.2214 9 14 3.1121 0.4454 2.7387 10 1 3.2072 1.5536 3.7226 11 1 1.6943 0.2597 2.3378 12 1 3.6209 -0.8071 3.3532 13 7 1.6600 2.0963 -1.2594 14 6 0.5001 2.9769 -1.0665 15 1 -0.0817 2.6295 -0.2126 16 6 -0.3601 2.9528 -2.3036 17 6 0.2295 2.9496 -3.5542 18 6 -0.5567 2.9220 -4.6897 19 6 -1.9392 2.9089 -4.5746 20 8 -2.7149 2.8868 -5.6902 21 6 -2.0399 2.8787 -6.9498 22 6 -2.5284 2.9179 -3.3187 23 6 -1.7377 2.9403 -2.1861 24 6 0.9820 4.4058 -0.8080 25 9 1.7287 4.8515 -1.9038 26 9 -0.1226 5.2443 -0.6236 27 9 1.7806 4.4280 0.3405 28 1 -0.3633 0.5955 0.8375 29 1 -0.3633 0.4275 -0.9345 30 1 -0.3633 -1.0231 0.0970 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 5.8441 0.1931 1.9955 34 1 2.4383 2.6043 -1.6523 35 1 1.3058 2.9639 -3.6433 36 1 -0.0957 2.9151 -5.6664 37 1 -2.7739 2.8604 -7.7553 38 1 -1.4250 3.7743 -7.0382 39 1 -1.4058 1.9946 -7.0164 40 1 -3.6044 2.9081 -3.2264 41 1 -2.1959 2.9469 -1.2082 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255157250.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:00:46 Heat of formation + Delta-G solvation = -159.884415 kcal Electronic energy + Delta-G solvation = -28115.207704 eV Core-core repulsion = 23773.665040 eV Total energy + Delta-G solvation = -4341.542663 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.134 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -49.72612 -47.25484 -47.15753 -40.18078 -38.14709 -36.48577 -33.29033 -31.86317 -31.05338 -30.14775 -28.19238 -27.04211 -26.09682 -23.29725 -22.70692 -22.32916 -20.87263 -19.93886 -18.26369 -18.10123 -18.00776 -17.72775 -16.74067 -16.23216 -15.83817 -15.40299 -15.08042 -14.51232 -14.22458 -13.98896 -13.85062 -13.77714 -13.62483 -13.46534 -13.34325 -13.31124 -13.08586 -12.90693 -12.77286 -12.65296 -12.22603 -12.15081 -11.86176 -11.68343 -11.52827 -11.09957 -10.87305 -10.77105 -10.75571 -10.43560 -9.94523 -9.34056 -9.18786 -8.94906 -8.53456 -8.13094 -7.95611 -6.19661 -4.16452 1.33543 1.43193 3.11316 3.16648 3.23612 3.33001 3.36261 3.75684 4.15970 4.30444 4.34615 4.39921 4.76809 4.80007 4.88108 4.97975 4.99980 5.09106 5.20340 5.27483 5.35323 5.43960 5.49084 5.71427 5.96702 6.00445 6.07212 6.15301 6.22776 6.37567 6.51495 6.64996 6.67750 6.73006 6.86940 6.89381 7.29134 7.32205 7.43111 7.69153 7.98666 8.40996 8.84982 9.44445 10.93010 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.017637 B = 0.004418 C = 0.004105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1587.192491 B = 6335.870425 C = 6819.872845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.113 4.113 3 C 0.188 3.812 4 H 0.012 0.988 5 C -0.536 4.536 6 H 0.077 0.923 7 C 0.082 3.918 8 N -0.886 5.886 9 Si 0.858 3.142 10 H -0.282 1.282 11 H -0.243 1.243 12 H -0.286 1.286 13 N -0.651 5.651 14 C 0.095 3.905 15 H 0.118 0.882 16 C -0.114 4.114 17 C -0.035 4.035 18 C -0.211 4.211 19 C 0.127 3.873 20 O -0.320 6.320 21 C 0.028 3.972 22 C -0.156 4.156 23 C -0.061 4.061 24 C 0.418 3.582 25 F -0.184 7.184 26 F -0.191 7.191 27 F -0.172 7.172 28 H 0.037 0.963 29 H 0.056 0.944 30 H 0.037 0.963 31 H 0.062 0.938 32 H 0.056 0.944 33 H 0.265 0.735 34 H 0.350 0.650 35 H 0.132 0.868 36 H 0.127 0.873 37 H 0.097 0.903 38 H 0.055 0.945 39 H 0.056 0.944 40 H 0.129 0.871 41 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.909 5.077 -10.448 18.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.151 4.151 3 C 0.080 3.920 4 H 0.030 0.970 5 C -0.573 4.573 6 H 0.095 0.905 7 C -0.122 4.122 8 N -0.523 5.523 9 Si 0.685 3.315 10 H -0.209 1.209 11 H -0.167 1.167 12 H -0.212 1.212 13 N -0.282 5.282 14 C -0.018 4.018 15 H 0.136 0.864 16 C -0.115 4.115 17 C -0.053 4.053 18 C -0.230 4.230 19 C 0.082 3.918 20 O -0.234 6.234 21 C -0.068 4.068 22 C -0.175 4.175 23 C -0.080 4.080 24 C 0.361 3.639 25 F -0.165 7.165 26 F -0.172 7.172 27 F -0.154 7.154 28 H 0.056 0.944 29 H 0.075 0.925 30 H 0.056 0.944 31 H 0.080 0.920 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.172 0.828 35 H 0.150 0.850 36 H 0.145 0.855 37 H 0.115 0.885 38 H 0.074 0.926 39 H 0.075 0.925 40 H 0.147 0.853 41 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -15.275 4.467 -10.579 19.111 hybrid contribution 0.483 0.714 1.290 1.551 sum -14.792 5.181 -9.289 18.220 Atomic orbital electron populations 1.21873 0.98449 0.99841 1.00689 1.21973 0.92916 0.98879 1.01357 1.19682 0.96278 0.91022 0.85015 0.96999 1.21104 0.88862 1.39097 1.08273 0.90527 1.24850 0.94764 0.94122 0.98442 1.69968 1.10866 1.41407 1.30040 0.87360 0.82566 0.78044 0.83497 1.20854 1.16750 1.21169 1.60793 1.07659 1.29803 1.29980 1.21879 0.96238 0.85319 0.98400 0.86376 1.19356 0.93072 1.05430 0.93680 1.20822 1.00347 0.93417 0.90757 1.21204 0.92379 1.09621 0.99786 1.19056 0.89653 0.96308 0.86748 1.86042 1.35347 1.88816 1.13193 1.23036 0.98817 1.01533 0.83378 1.20277 1.00255 1.07626 0.89305 1.20794 0.92425 0.96588 0.98173 1.22033 0.75793 0.91661 0.74387 1.93127 1.77751 1.91024 1.54610 1.93138 1.53790 1.75124 1.95194 1.93260 1.74639 1.96920 1.50535 0.94384 0.92475 0.94373 0.91957 0.92558 0.92526 0.82807 0.85016 0.85474 0.88472 0.92642 0.92537 0.85270 0.85299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.60 8.75 37.16 0.33 -2.28 16 2 C -0.11 -2.35 4.74 -26.73 -0.13 -2.48 16 3 C 0.19 4.12 1.25 -68.86 -0.09 4.03 16 4 H 0.01 0.28 5.87 -51.93 -0.30 -0.03 16 5 C -0.54 -14.18 9.11 -34.44 -0.31 -14.49 16 6 H 0.08 2.20 7.64 -52.49 -0.40 1.80 16 7 C 0.08 2.27 5.33 -17.82 -0.09 2.17 16 8 N -0.89 -26.18 13.96 55.43 0.77 -25.41 16 9 Si 0.86 20.43 25.68 -169.99 -4.36 16.06 16 10 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.24 -5.35 5.22 56.52 0.30 -5.05 16 12 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 13 N -0.65 -12.15 5.15 -102.16 -0.53 -12.68 16 14 C 0.10 1.54 1.30 -68.86 -0.09 1.45 16 15 H 0.12 1.86 6.29 -51.93 -0.33 1.53 16 16 C -0.11 -1.65 4.53 -104.60 -0.47 -2.12 16 17 C -0.04 -0.49 8.55 -39.61 -0.34 -0.83 16 18 C -0.21 -2.62 9.04 -39.43 -0.36 -2.98 16 19 C 0.13 1.60 6.69 -39.22 -0.26 1.34 16 20 O -0.32 -3.67 10.50 -19.43 -0.20 -3.87 16 21 C 0.03 0.21 9.81 101.05 0.99 1.20 16 22 C -0.16 -1.91 9.99 -39.43 -0.39 -2.30 16 23 C -0.06 -0.78 9.66 -39.61 -0.38 -1.16 16 24 C 0.42 7.05 2.68 37.16 0.10 7.14 16 25 F -0.18 -3.09 15.52 2.25 0.03 -3.05 16 26 F -0.19 -3.03 17.03 2.25 0.04 -2.99 16 27 F -0.17 -3.35 16.29 2.25 0.04 -3.31 16 28 H 0.04 0.63 7.97 -51.93 -0.41 0.21 16 29 H 0.06 0.94 7.16 -51.93 -0.37 0.57 16 30 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 32 H 0.06 1.24 4.14 -51.93 -0.21 1.02 16 33 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 34 H 0.35 6.78 6.72 -39.29 -0.26 6.52 16 35 H 0.13 1.85 7.42 -52.48 -0.39 1.46 16 36 H 0.13 1.29 6.30 -52.49 -0.33 0.96 16 37 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.05 0.38 7.66 -51.93 -0.40 -0.02 16 39 H 0.06 0.40 7.66 -51.93 -0.40 0.00 16 40 H 0.13 1.34 8.06 -52.48 -0.42 0.92 16 41 H 0.13 1.40 8.03 -52.49 -0.42 0.98 16 LS Contribution 338.63 15.07 5.10 5.10 Total: -1.00 -29.41 338.63 -5.78 -35.18 By element: Atomic # 1 Polarization: 11.43 SS G_CDS: -5.17 Total: 6.27 kcal Atomic # 6 Polarization: -9.81 SS G_CDS: -1.50 Total: -11.31 kcal Atomic # 7 Polarization: -38.33 SS G_CDS: 0.25 Total: -38.09 kcal Atomic # 8 Polarization: -3.67 SS G_CDS: -0.20 Total: -3.87 kcal Atomic # 9 Polarization: -9.46 SS G_CDS: 0.11 Total: -9.35 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -4.36 Total: 16.06 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -29.41 -5.78 -35.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255157250.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.700 kcal (2) G-P(sol) polarization free energy of solvation -29.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds