Wall clock time and date at job start Tue Mar 31 2020 13:00:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47221 * 2 1 4 4 H 1.09001 * 109.46950 * 54.58288 * 3 2 1 5 5 C 1.50701 * 109.47291 * 174.58309 * 3 2 1 6 6 H 1.08000 * 120.00181 * 121.14755 * 5 3 2 7 7 C 1.37883 * 119.99515 * 301.14606 * 5 3 2 8 8 N 1.31517 * 119.99546 * 165.25501 * 7 5 3 9 9 Si 1.86798 * 120.00248 * 344.98262 * 7 5 3 10 10 H 1.48503 * 109.47087 * 264.90705 * 9 7 5 11 11 H 1.48503 * 109.47055 * 24.90825 * 9 7 5 12 12 H 1.48503 * 109.46992 * 144.91090 * 9 7 5 13 13 N 1.46902 * 109.47171 * 294.58477 * 3 2 1 14 14 C 1.46903 * 111.00188 * 101.96618 * 13 3 2 15 15 H 1.09005 * 109.46741 * 334.54851 * 14 13 3 16 16 C 1.50699 * 109.46855 * 214.55325 * 14 13 3 17 17 C 1.38268 * 119.94401 * 319.72318 * 16 14 13 18 18 C 1.38143 * 120.05410 * 179.73288 * 17 16 14 19 19 C 1.38729 * 119.94395 * 0.54287 * 18 17 16 20 20 O 1.35901 * 120.05716 * 179.75414 * 19 18 17 21 21 C 1.42901 * 117.00045 * 359.97438 * 20 19 18 22 22 C 1.38735 * 119.88832 * 359.72773 * 19 18 17 23 23 C 1.38144 * 119.94561 * 0.02562 * 22 19 18 24 24 C 1.52997 * 109.47127 * 94.55070 * 14 13 3 25 25 F 1.39896 * 109.47386 * 59.99866 * 24 14 13 26 26 F 1.39905 * 109.46947 * 180.02562 * 24 14 13 27 27 F 1.39904 * 109.47110 * 299.99921 * 24 14 13 28 28 H 1.08997 * 109.46982 * 305.41754 * 1 2 3 29 29 H 1.09000 * 109.47078 * 65.41698 * 1 2 3 30 30 H 1.09000 * 109.47045 * 185.41454 * 1 2 3 31 31 H 1.08999 * 109.46802 * 240.00286 * 2 1 3 32 32 H 1.09000 * 109.47251 * 120.00122 * 2 1 3 33 33 H 0.96994 * 119.99752 * 179.71890 * 8 7 5 34 34 H 1.00904 * 110.99741 * 225.91854 * 13 3 2 35 35 H 1.08003 * 119.96951 * 0.02562 * 17 16 14 36 36 H 1.08000 * 120.02934 * 180.27043 * 18 17 16 37 37 H 1.08995 * 109.47538 * 179.97438 * 21 20 19 38 38 H 1.08995 * 109.47387 * 300.00760 * 21 20 19 39 39 H 1.09003 * 109.46776 * 60.00485 * 21 20 19 40 40 H 1.08004 * 120.02859 * 179.97438 * 22 19 18 41 41 H 1.07994 * 119.97281 * 180.02562 * 23 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5996 1.9836 0.8375 5 6 3.5411 1.4446 0.1341 6 1 4.1509 1.9037 -0.6299 7 6 4.1358 0.8604 1.2324 8 7 5.4250 0.6003 1.2214 9 14 3.1121 0.4454 2.7387 10 1 3.2072 1.5536 3.7226 11 1 1.6943 0.2597 2.3378 12 1 3.6209 -0.8071 3.3532 13 7 1.6600 2.0963 -1.2594 14 6 0.5001 2.9769 -1.0665 15 1 -0.0817 2.6295 -0.2126 16 6 -0.3601 2.9528 -2.3036 17 6 0.2295 2.9496 -3.5542 18 6 -0.5567 2.9220 -4.6897 19 6 -1.9392 2.9089 -4.5746 20 8 -2.7149 2.8868 -5.6902 21 6 -2.0399 2.8787 -6.9498 22 6 -2.5284 2.9179 -3.3187 23 6 -1.7377 2.9403 -2.1861 24 6 0.9820 4.4058 -0.8080 25 9 1.7287 4.8515 -1.9038 26 9 -0.1226 5.2443 -0.6236 27 9 1.7806 4.4280 0.3405 28 1 -0.3633 0.5955 0.8375 29 1 -0.3633 0.4275 -0.9345 30 1 -0.3633 -1.0231 0.0970 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 5.8441 0.1931 1.9955 34 1 2.4383 2.6043 -1.6523 35 1 1.3058 2.9639 -3.6433 36 1 -0.0957 2.9151 -5.6664 37 1 -2.7739 2.8604 -7.7553 38 1 -1.4250 3.7743 -7.0382 39 1 -1.4058 1.9946 -7.0164 40 1 -3.6044 2.9081 -3.2264 41 1 -2.1959 2.9469 -1.2082 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255157250.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:00:45 Heat of formation + Delta-G solvation = -177.936885 kcal Electronic energy + Delta-G solvation = -28115.990518 eV Core-core repulsion = 23773.665040 eV Total energy + Delta-G solvation = -4342.325477 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.134 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -51.10119 -48.60222 -48.57585 -41.10293 -39.29165 -37.83339 -34.91941 -33.66048 -32.01004 -31.39862 -29.43747 -28.05393 -27.59632 -24.59034 -24.22820 -23.41332 -21.99900 -21.57759 -19.61514 -19.41420 -19.27408 -19.05552 -18.38465 -17.30923 -16.93878 -16.59431 -16.42149 -15.69322 -15.56306 -15.43895 -15.27729 -15.03062 -15.00713 -14.75015 -14.74704 -14.64432 -14.46589 -14.27617 -14.13747 -13.80323 -13.65540 -13.50168 -13.01212 -12.85074 -12.73993 -12.66139 -12.52210 -12.09111 -11.87881 -11.67369 -11.64419 -11.19735 -10.97498 -10.59464 -9.91180 -9.51667 -9.10490 -8.32523 -6.32569 0.33627 0.45733 1.34184 1.40178 1.47452 1.80239 2.34625 2.40249 2.65213 2.80880 3.00963 3.05152 3.11265 3.43528 3.84143 3.90702 3.97712 4.13144 4.36277 4.43155 4.47435 4.48640 4.52566 4.57871 4.62477 4.75909 4.77585 4.87422 5.12499 5.20908 5.24563 5.25892 5.36311 5.42122 5.50511 5.64903 5.75298 5.79069 5.92151 6.22791 6.43799 6.46944 6.74404 7.31773 8.83840 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.017637 B = 0.004418 C = 0.004105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1587.192491 B = 6335.870425 C = 6819.872845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.113 4.113 3 C 0.195 3.805 4 H 0.014 0.986 5 C -0.536 4.536 6 H 0.037 0.963 7 C 0.025 3.975 8 N -0.938 5.938 9 Si 0.916 3.084 10 H -0.285 1.285 11 H -0.209 1.209 12 H -0.286 1.286 13 N -0.647 5.647 14 C 0.102 3.898 15 H 0.129 0.871 16 C -0.130 4.130 17 C -0.049 4.049 18 C -0.214 4.214 19 C 0.125 3.875 20 O -0.331 6.331 21 C 0.018 3.982 22 C -0.159 4.159 23 C -0.059 4.059 24 C 0.417 3.583 25 F -0.186 7.186 26 F -0.182 7.182 27 F -0.191 7.191 28 H 0.049 0.951 29 H 0.064 0.936 30 H 0.056 0.944 31 H 0.049 0.951 32 H 0.044 0.956 33 H 0.265 0.735 34 H 0.343 0.657 35 H 0.122 0.878 36 H 0.145 0.855 37 H 0.121 0.879 38 H 0.062 0.938 39 H 0.061 0.939 40 H 0.149 0.851 41 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.264 4.886 -10.793 21.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.152 4.152 3 C 0.086 3.914 4 H 0.031 0.969 5 C -0.574 4.574 6 H 0.056 0.944 7 C -0.174 4.174 8 N -0.577 5.577 9 Si 0.740 3.260 10 H -0.212 1.212 11 H -0.132 1.132 12 H -0.212 1.212 13 N -0.277 5.277 14 C -0.011 4.011 15 H 0.146 0.854 16 C -0.131 4.131 17 C -0.067 4.067 18 C -0.232 4.232 19 C 0.080 3.920 20 O -0.245 6.245 21 C -0.076 4.076 22 C -0.177 4.177 23 C -0.078 4.078 24 C 0.360 3.640 25 F -0.167 7.167 26 F -0.163 7.163 27 F -0.172 7.172 28 H 0.068 0.932 29 H 0.083 0.917 30 H 0.075 0.925 31 H 0.068 0.932 32 H 0.063 0.937 33 H 0.074 0.926 34 H 0.164 0.836 35 H 0.140 0.860 36 H 0.163 0.837 37 H 0.139 0.861 38 H 0.081 0.919 39 H 0.080 0.920 40 H 0.167 0.833 41 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -18.665 4.285 -10.953 22.062 hybrid contribution 1.538 0.858 1.198 2.130 sum -17.128 5.143 -9.754 20.370 Atomic orbital electron populations 1.21784 0.95102 1.01468 1.01662 1.21881 0.95862 0.97218 1.00203 1.19527 0.93026 0.92446 0.86420 0.96866 1.21430 0.91413 1.37568 1.06948 0.94431 1.25700 0.95757 0.94378 1.01560 1.70107 1.13006 1.43532 1.31057 0.86433 0.82852 0.77422 0.79262 1.21211 1.13172 1.21217 1.60753 1.08147 1.30682 1.28139 1.21904 0.95180 0.84039 0.99964 0.85375 1.19250 0.93618 1.07539 0.92729 1.20847 1.00148 0.94320 0.91433 1.21366 0.92555 1.09169 1.00121 1.19248 0.89725 0.95536 0.87515 1.86038 1.35958 1.88494 1.13960 1.23330 0.99814 1.02140 0.82362 1.20555 1.01291 1.06868 0.89035 1.21000 0.91584 0.95733 0.99453 1.22187 0.75659 0.92404 0.73702 1.93122 1.77907 1.91101 1.54608 1.93148 1.53159 1.74925 1.95110 1.93224 1.75316 1.97045 1.51638 0.93227 0.91673 0.92485 0.93217 0.93733 0.92577 0.83634 0.86027 0.83709 0.86112 0.91924 0.92013 0.83323 0.83252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.41 8.75 71.98 0.63 -3.78 16 2 C -0.11 -4.52 4.74 30.59 0.14 -4.37 16 3 C 0.19 8.40 1.25 44.17 0.06 8.46 16 4 H 0.01 0.59 5.87 -2.39 -0.01 0.58 16 5 C -0.54 -29.13 9.11 25.60 0.23 -28.90 16 6 H 0.04 2.28 7.64 -2.91 -0.02 2.26 16 7 C 0.03 1.41 5.33 84.66 0.45 1.87 16 8 N -0.94 -57.40 13.96 21.45 0.30 -57.10 16 9 Si 0.92 42.00 25.68 68.60 1.76 43.76 16 10 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 11 H -0.21 -8.39 5.22 99.48 0.52 -7.87 16 12 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 13 N -0.65 -23.98 5.15 -477.14 -2.46 -26.43 16 14 C 0.10 3.15 1.30 44.17 0.06 3.21 16 15 H 0.13 3.69 6.29 -2.38 -0.01 3.67 16 16 C -0.13 -3.52 4.53 -19.85 -0.09 -3.61 16 17 C -0.05 -1.32 8.55 22.25 0.19 -1.13 16 18 C -0.21 -4.92 9.04 22.36 0.20 -4.71 16 19 C 0.13 2.83 6.69 22.51 0.15 2.98 16 20 O -0.33 -6.69 10.50 -92.43 -0.97 -7.66 16 21 C 0.02 0.22 9.81 113.37 1.11 1.34 16 22 C -0.16 -3.42 9.99 22.37 0.22 -3.19 16 23 C -0.06 -1.34 9.66 22.25 0.22 -1.13 16 24 C 0.42 13.74 2.68 71.98 0.19 13.94 16 25 F -0.19 -6.25 15.52 44.97 0.70 -5.55 16 26 F -0.18 -5.48 17.03 44.97 0.77 -4.71 16 27 F -0.19 -7.38 16.29 44.97 0.73 -6.65 16 28 H 0.05 1.42 7.97 -2.39 -0.02 1.40 16 29 H 0.06 1.91 7.16 -2.39 -0.02 1.90 16 30 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 32 H 0.04 1.87 4.14 -2.39 -0.01 1.86 16 33 H 0.27 15.28 8.31 -92.71 -0.77 14.50 16 34 H 0.34 13.66 6.72 -89.69 -0.60 13.06 16 35 H 0.12 3.43 7.42 -2.91 -0.02 3.41 16 36 H 0.15 2.67 6.30 -2.91 -0.02 2.65 16 37 H 0.12 0.94 8.14 -2.39 -0.02 0.92 16 38 H 0.06 0.71 7.66 -2.39 -0.02 0.69 16 39 H 0.06 0.72 7.66 -2.39 -0.02 0.71 16 40 H 0.15 2.56 8.06 -2.91 -0.02 2.54 16 41 H 0.15 2.68 8.03 -2.91 -0.02 2.66 16 Total: -1.00 -64.58 338.63 4.88 -59.70 By element: Atomic # 1 Polarization: 23.41 SS G_CDS: 0.28 Total: 23.69 kcal Atomic # 6 Polarization: -22.80 SS G_CDS: 3.77 Total: -19.04 kcal Atomic # 7 Polarization: -81.37 SS G_CDS: -2.16 Total: -83.53 kcal Atomic # 8 Polarization: -6.69 SS G_CDS: -0.97 Total: -7.66 kcal Atomic # 9 Polarization: -19.11 SS G_CDS: 2.20 Total: -16.91 kcal Atomic # 14 Polarization: 42.00 SS G_CDS: 1.76 Total: 43.76 kcal Total: -64.58 4.88 -59.70 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255157250.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.240 kcal (2) G-P(sol) polarization free energy of solvation -64.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -182.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds