Wall clock time and date at job start Tue Mar 31 2020 13:00:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.47416 * 2 1 4 4 H 1.09004 * 109.46666 * 305.28924 * 3 2 1 5 5 C 1.50695 * 109.47007 * 185.28943 * 3 2 1 6 6 H 1.08000 * 119.99717 * 239.99826 * 5 3 2 7 7 C 1.37881 * 120.00251 * 60.00010 * 5 3 2 8 8 N 1.31513 * 119.99804 * 359.97438 * 7 5 3 9 9 Si 1.86804 * 119.99779 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47200 * 89.99987 * 9 7 5 11 11 H 1.48508 * 109.46761 * 209.99673 * 9 7 5 12 12 H 1.48496 * 109.47167 * 329.99809 * 9 7 5 13 13 N 1.46898 * 109.47021 * 65.28572 * 3 2 1 14 14 C 1.46893 * 110.99976 * 260.27661 * 13 3 2 15 15 H 1.09002 * 109.47578 * 26.20350 * 14 13 3 16 16 C 1.50700 * 109.47099 * 146.20945 * 14 13 3 17 17 C 1.38271 * 119.94369 * 219.99663 * 16 14 13 18 18 C 1.38140 * 120.05501 * 179.97438 * 17 16 14 19 19 C 1.38729 * 119.94437 * 0.02562 * 18 17 16 20 20 O 1.35900 * 120.05842 * 179.97438 * 19 18 17 21 21 C 1.42901 * 117.00468 * 180.02562 * 20 19 18 22 22 C 1.38729 * 119.89025 * 359.97438 * 19 18 17 23 23 C 1.38146 * 119.94258 * 0.02562 * 22 19 18 24 24 C 1.53004 * 109.47017 * 266.20653 * 14 13 3 25 25 F 1.39899 * 109.47447 * 300.00264 * 24 14 13 26 26 F 1.39898 * 109.46860 * 60.00243 * 24 14 13 27 27 F 1.39904 * 109.47159 * 180.02562 * 24 14 13 28 28 H 1.09003 * 109.46790 * 57.96931 * 1 2 3 29 29 H 1.08993 * 109.47313 * 177.97137 * 1 2 3 30 30 H 1.08997 * 109.47100 * 297.97872 * 1 2 3 31 31 H 1.09006 * 109.47044 * 240.00345 * 2 1 3 32 32 H 1.08999 * 109.47299 * 120.00489 * 2 1 3 33 33 H 0.97000 * 119.99888 * 180.02562 * 8 7 5 34 34 H 1.00900 * 110.99653 * 136.32107 * 13 3 2 35 35 H 1.07997 * 119.96953 * 0.27902 * 17 16 14 36 36 H 1.08003 * 120.02488 * 180.02562 * 18 17 16 37 37 H 1.09002 * 109.46688 * 299.99763 * 21 20 19 38 38 H 1.08999 * 109.47057 * 59.99538 * 21 20 19 39 39 H 1.09004 * 109.47053 * 179.97438 * 21 20 19 40 40 H 1.08003 * 120.03125 * 179.97438 * 22 19 18 41 41 H 1.07998 * 119.96808 * 179.97438 * 23 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6014 1.9829 -0.8389 5 6 3.5413 1.4444 -0.1310 6 1 4.1503 1.8877 0.6430 7 6 4.1375 0.8803 -1.2389 8 7 3.3959 0.3402 -2.1812 9 14 5.9985 0.8821 -1.4008 10 1 6.5502 -0.3510 -0.7841 11 1 6.3702 0.9259 -2.8380 12 1 6.5544 2.0728 -0.7092 13 7 1.6574 2.0972 1.2581 14 6 0.4659 2.9362 1.0737 15 1 -0.1237 2.5523 0.2412 16 6 -0.3648 2.9123 2.3308 17 6 -1.7437 2.8533 2.2459 18 6 -2.5074 2.8307 3.3968 19 6 -1.8898 2.8677 4.6385 20 8 -2.6389 2.8460 5.7722 21 6 -1.9357 2.8872 7.0155 22 6 -0.5063 2.9268 4.7210 23 6 0.2530 2.9492 3.5672 24 6 0.8958 4.3737 0.7739 25 9 1.6525 4.8667 1.8424 26 9 1.6670 4.3960 -0.3931 27 9 -0.2390 5.1730 0.5989 28 1 -0.3633 0.5451 -0.8713 29 1 -0.3633 -1.0269 -0.0364 30 1 -0.3633 0.4821 0.9075 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 3.8153 -0.0570 -2.9605 34 1 2.4240 2.6352 1.6335 35 1 -2.2237 2.8200 1.2791 36 1 -3.5843 2.7842 3.3299 37 1 -1.2723 2.0252 7.0863 38 1 -1.3479 3.8035 7.0702 39 1 -2.6504 2.8647 7.8382 40 1 -0.0231 2.9561 5.6865 41 1 1.3301 2.9957 3.6309 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255157251.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:00:50 Heat of formation + Delta-G solvation = -169.279430 kcal Electronic energy + Delta-G solvation = -28031.786452 eV Core-core repulsion = 23689.836390 eV Total energy + Delta-G solvation = -4341.950062 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.134 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.64433 -47.17796 -47.07024 -40.12090 -38.04288 -36.26772 -33.24800 -31.43629 -30.98212 -29.97530 -28.03356 -26.90967 -25.74744 -23.27332 -22.86958 -22.24260 -20.75771 -19.62037 -18.20213 -18.03816 -17.92388 -17.57641 -16.52624 -16.14820 -15.79656 -15.06842 -14.92662 -14.43753 -14.14727 -13.91100 -13.87209 -13.71304 -13.54915 -13.36625 -13.25217 -13.19808 -13.08913 -12.75898 -12.54149 -12.39884 -12.06554 -11.93036 -11.65403 -11.45036 -11.17845 -11.01008 -10.85572 -10.76235 -10.67869 -10.22593 -9.83018 -9.58796 -8.96556 -8.88265 -8.53891 -8.06522 -7.70866 -6.09586 -4.17573 1.40641 1.49559 3.20192 3.22055 3.26574 3.33484 3.36334 3.82855 4.25118 4.36611 4.43031 4.51411 4.81363 4.91528 4.96854 5.00919 5.05138 5.20067 5.28589 5.31823 5.46997 5.52486 5.57840 5.79095 6.13677 6.26945 6.29281 6.36028 6.43430 6.53796 6.73434 6.79515 6.89130 7.02946 7.27588 7.33294 7.38228 7.67982 7.75671 8.01669 8.17886 8.40106 8.88297 9.48377 10.95536 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.017142 B = 0.004168 C = 0.003938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1633.066390 B = 6716.397318 C = 7107.680696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.106 4.106 3 C 0.213 3.787 4 H 0.020 0.980 5 C -0.528 4.528 6 H 0.059 0.941 7 C 0.068 3.932 8 N -0.884 5.884 9 Si 0.896 3.104 10 H -0.280 1.280 11 H -0.286 1.286 12 H -0.274 1.274 13 N -0.660 5.660 14 C 0.097 3.903 15 H 0.120 0.880 16 C -0.112 4.112 17 C -0.061 4.061 18 C -0.156 4.156 19 C 0.126 3.874 20 O -0.321 6.321 21 C 0.028 3.972 22 C -0.212 4.212 23 C -0.036 4.036 24 C 0.417 3.583 25 F -0.187 7.187 26 F -0.172 7.172 27 F -0.192 7.192 28 H 0.036 0.964 29 H 0.031 0.969 30 H 0.046 0.954 31 H 0.093 0.907 32 H 0.039 0.961 33 H 0.262 0.738 34 H 0.342 0.658 35 H 0.130 0.870 36 H 0.129 0.871 37 H 0.056 0.944 38 H 0.054 0.946 39 H 0.096 0.904 40 H 0.126 0.874 41 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.994 5.450 11.995 16.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.144 4.144 3 C 0.106 3.894 4 H 0.038 0.962 5 C -0.566 4.566 6 H 0.078 0.922 7 C -0.135 4.135 8 N -0.522 5.522 9 Si 0.723 3.277 10 H -0.206 1.206 11 H -0.212 1.212 12 H -0.199 1.199 13 N -0.291 5.291 14 C -0.017 4.017 15 H 0.138 0.862 16 C -0.113 4.113 17 C -0.080 4.080 18 C -0.174 4.174 19 C 0.081 3.919 20 O -0.234 6.234 21 C -0.067 4.067 22 C -0.231 4.231 23 C -0.055 4.055 24 C 0.361 3.639 25 F -0.168 7.168 26 F -0.153 7.153 27 F -0.174 7.174 28 H 0.055 0.945 29 H 0.050 0.950 30 H 0.065 0.935 31 H 0.111 0.889 32 H 0.058 0.942 33 H 0.072 0.928 34 H 0.163 0.837 35 H 0.147 0.853 36 H 0.147 0.853 37 H 0.074 0.926 38 H 0.073 0.927 39 H 0.115 0.885 40 H 0.144 0.856 41 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -10.489 4.813 12.050 16.685 hybrid contribution 1.751 0.934 -0.564 2.063 sum -8.738 5.747 11.486 15.534 Atomic orbital electron populations 1.21878 0.99578 0.99272 0.99815 1.21551 0.91531 0.99090 1.02256 1.19384 0.95045 0.91407 0.83566 0.96245 1.21299 0.90957 1.38837 1.05548 0.92244 1.24867 0.98303 0.94869 0.95478 1.69869 1.34954 1.38037 1.09372 0.86535 0.85396 0.78474 0.77245 1.20585 1.21200 1.19904 1.60971 1.05709 1.29961 1.32429 1.21883 0.96711 0.85229 0.97854 0.86231 1.19410 0.93119 1.04933 0.93815 1.20817 0.92657 0.96497 0.98011 1.20277 1.00227 1.07595 0.89340 1.19043 0.89933 0.96521 0.86432 1.86039 1.35591 1.88800 1.13000 1.23027 0.98331 1.01458 0.83912 1.21190 0.92524 1.09753 0.99606 1.20800 1.00255 0.93657 0.90752 1.22123 0.75277 0.92024 0.74521 1.93113 1.77257 1.89689 1.56754 1.93259 1.76000 1.96929 1.49094 1.93131 1.51601 1.77303 1.95338 0.94497 0.94975 0.93530 0.88904 0.94211 0.92758 0.83748 0.85256 0.85294 0.92578 0.92704 0.88514 0.85577 0.85150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.86 8.73 37.16 0.32 -2.53 16 2 C -0.11 -2.42 5.45 -26.73 -0.15 -2.57 16 3 C 0.21 4.96 1.73 -68.87 -0.12 4.85 16 4 H 0.02 0.51 6.75 -51.93 -0.35 0.16 16 5 C -0.53 -13.73 8.60 -34.44 -0.30 -14.03 16 6 H 0.06 1.53 7.42 -52.49 -0.39 1.14 16 7 C 0.07 1.80 5.29 -17.82 -0.09 1.70 16 8 N -0.88 -24.25 11.29 55.43 0.63 -23.63 16 9 Si 0.90 20.77 29.54 -169.99 -5.02 15.75 16 10 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 11 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 12 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 13 N -0.66 -12.89 5.16 -102.17 -0.53 -13.42 16 14 C 0.10 1.66 1.20 -68.87 -0.08 1.58 16 15 H 0.12 2.08 6.09 -51.93 -0.32 1.76 16 16 C -0.11 -1.71 4.40 -104.60 -0.46 -2.17 16 17 C -0.06 -0.84 9.66 -39.61 -0.38 -1.22 16 18 C -0.16 -2.02 9.99 -39.44 -0.39 -2.41 16 19 C 0.13 1.65 6.69 -39.22 -0.26 1.39 16 20 O -0.32 -3.82 10.50 -19.43 -0.20 -4.03 16 21 C 0.03 0.22 9.81 101.05 0.99 1.21 16 22 C -0.21 -2.74 9.04 -39.43 -0.36 -3.10 16 23 C -0.04 -0.53 8.56 -39.61 -0.34 -0.87 16 24 C 0.42 7.35 2.69 37.16 0.10 7.45 16 25 F -0.19 -3.21 15.54 2.25 0.04 -3.18 16 26 F -0.17 -3.48 16.15 2.25 0.04 -3.44 16 27 F -0.19 -3.20 17.02 2.25 0.04 -3.16 16 28 H 0.04 0.69 8.04 -51.93 -0.42 0.28 16 29 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.05 0.85 6.62 -51.93 -0.34 0.50 16 31 H 0.09 2.39 5.95 -51.93 -0.31 2.08 16 32 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.26 6.90 8.31 -40.82 -0.34 6.57 16 34 H 0.34 6.74 6.73 -39.29 -0.26 6.48 16 35 H 0.13 1.54 8.03 -52.49 -0.42 1.12 16 36 H 0.13 1.43 8.06 -52.48 -0.42 1.00 16 37 H 0.06 0.42 7.66 -51.93 -0.40 0.02 16 38 H 0.05 0.40 7.66 -51.93 -0.40 0.00 16 39 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.13 1.33 6.30 -52.48 -0.33 1.00 16 41 H 0.13 1.89 7.40 -52.49 -0.39 1.50 16 LS Contribution 343.79 15.07 5.18 5.18 Total: -1.00 -27.95 343.79 -6.50 -34.46 By element: Atomic # 1 Polarization: 11.33 SS G_CDS: -5.15 Total: 6.18 kcal Atomic # 6 Polarization: -9.20 SS G_CDS: -1.52 Total: -10.71 kcal Atomic # 7 Polarization: -37.14 SS G_CDS: 0.10 Total: -37.04 kcal Atomic # 8 Polarization: -3.82 SS G_CDS: -0.20 Total: -4.03 kcal Atomic # 9 Polarization: -9.89 SS G_CDS: 0.11 Total: -9.78 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -27.95 -6.50 -34.46 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255157251.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -134.822 kcal (2) G-P(sol) polarization free energy of solvation -27.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds