Wall clock time and date at job start Tue Mar 31 2020 13:00:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.47416 * 2 1 4 4 H 1.09004 * 109.46666 * 305.28924 * 3 2 1 5 5 C 1.50695 * 109.47007 * 185.28943 * 3 2 1 6 6 H 1.08000 * 119.99717 * 239.99826 * 5 3 2 7 7 C 1.37881 * 120.00251 * 60.00010 * 5 3 2 8 8 N 1.31513 * 119.99804 * 359.97438 * 7 5 3 9 9 Si 1.86804 * 119.99779 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47200 * 89.99987 * 9 7 5 11 11 H 1.48508 * 109.46761 * 209.99673 * 9 7 5 12 12 H 1.48496 * 109.47167 * 329.99809 * 9 7 5 13 13 N 1.46898 * 109.47021 * 65.28572 * 3 2 1 14 14 C 1.46893 * 110.99976 * 260.27661 * 13 3 2 15 15 H 1.09002 * 109.47578 * 26.20350 * 14 13 3 16 16 C 1.50700 * 109.47099 * 146.20945 * 14 13 3 17 17 C 1.38271 * 119.94369 * 219.99663 * 16 14 13 18 18 C 1.38140 * 120.05501 * 179.97438 * 17 16 14 19 19 C 1.38729 * 119.94437 * 0.02562 * 18 17 16 20 20 O 1.35900 * 120.05842 * 179.97438 * 19 18 17 21 21 C 1.42901 * 117.00468 * 180.02562 * 20 19 18 22 22 C 1.38729 * 119.89025 * 359.97438 * 19 18 17 23 23 C 1.38146 * 119.94258 * 0.02562 * 22 19 18 24 24 C 1.53004 * 109.47017 * 266.20653 * 14 13 3 25 25 F 1.39899 * 109.47447 * 300.00264 * 24 14 13 26 26 F 1.39898 * 109.46860 * 60.00243 * 24 14 13 27 27 F 1.39904 * 109.47159 * 180.02562 * 24 14 13 28 28 H 1.09003 * 109.46790 * 57.96931 * 1 2 3 29 29 H 1.08993 * 109.47313 * 177.97137 * 1 2 3 30 30 H 1.08997 * 109.47100 * 297.97872 * 1 2 3 31 31 H 1.09006 * 109.47044 * 240.00345 * 2 1 3 32 32 H 1.08999 * 109.47299 * 120.00489 * 2 1 3 33 33 H 0.97000 * 119.99888 * 180.02562 * 8 7 5 34 34 H 1.00900 * 110.99653 * 136.32107 * 13 3 2 35 35 H 1.07997 * 119.96953 * 0.27902 * 17 16 14 36 36 H 1.08003 * 120.02488 * 180.02562 * 18 17 16 37 37 H 1.09002 * 109.46688 * 299.99763 * 21 20 19 38 38 H 1.08999 * 109.47057 * 59.99538 * 21 20 19 39 39 H 1.09004 * 109.47053 * 179.97438 * 21 20 19 40 40 H 1.08003 * 120.03125 * 179.97438 * 22 19 18 41 41 H 1.07998 * 119.96808 * 179.97438 * 23 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6014 1.9829 -0.8389 5 6 3.5413 1.4444 -0.1310 6 1 4.1503 1.8877 0.6430 7 6 4.1375 0.8803 -1.2389 8 7 3.3959 0.3402 -2.1812 9 14 5.9985 0.8821 -1.4008 10 1 6.5502 -0.3510 -0.7841 11 1 6.3702 0.9259 -2.8380 12 1 6.5544 2.0728 -0.7092 13 7 1.6574 2.0972 1.2581 14 6 0.4659 2.9362 1.0737 15 1 -0.1237 2.5523 0.2412 16 6 -0.3648 2.9123 2.3308 17 6 -1.7437 2.8533 2.2459 18 6 -2.5074 2.8307 3.3968 19 6 -1.8898 2.8677 4.6385 20 8 -2.6389 2.8460 5.7722 21 6 -1.9357 2.8872 7.0155 22 6 -0.5063 2.9268 4.7210 23 6 0.2530 2.9492 3.5672 24 6 0.8958 4.3737 0.7739 25 9 1.6525 4.8667 1.8424 26 9 1.6670 4.3960 -0.3931 27 9 -0.2390 5.1730 0.5989 28 1 -0.3633 0.5451 -0.8713 29 1 -0.3633 -1.0269 -0.0364 30 1 -0.3633 0.4821 0.9075 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 3.8153 -0.0570 -2.9605 34 1 2.4240 2.6352 1.6335 35 1 -2.2237 2.8200 1.2791 36 1 -3.5843 2.7842 3.3299 37 1 -1.2723 2.0252 7.0863 38 1 -1.3479 3.8035 7.0702 39 1 -2.6504 2.8647 7.8382 40 1 -0.0231 2.9561 5.6865 41 1 1.3301 2.9957 3.6309 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255157251.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:00:49 Heat of formation + Delta-G solvation = -184.462835 kcal Electronic energy + Delta-G solvation = -28032.444854 eV Core-core repulsion = 23689.836390 eV Total energy + Delta-G solvation = -4342.608464 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.134 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -51.09159 -48.58539 -48.56973 -41.09629 -39.22388 -37.71804 -34.93744 -33.18354 -32.00722 -31.33526 -29.27704 -27.90818 -27.43849 -24.82799 -24.28354 -23.36812 -21.96471 -21.38211 -19.57078 -19.40283 -19.14325 -19.04989 -18.19333 -17.19628 -16.73561 -16.58763 -16.39727 -15.73336 -15.55885 -15.43499 -15.30459 -15.00077 -14.80235 -14.74379 -14.69083 -14.63986 -14.37047 -14.12564 -14.03285 -13.63095 -13.54891 -13.21105 -12.92219 -12.83426 -12.70490 -12.67463 -12.56371 -12.11457 -11.86271 -11.67544 -11.56937 -11.36896 -10.87033 -10.52282 -9.91003 -9.38455 -9.09889 -8.11383 -6.25315 0.34380 0.45803 1.41966 1.43535 1.52273 1.81809 2.40386 2.41296 2.66608 2.89062 3.03761 3.11903 3.18346 3.51424 3.85688 3.95051 3.98790 4.16890 4.37527 4.44168 4.49071 4.59366 4.62758 4.72769 4.76166 4.77848 4.83169 5.08075 5.12979 5.26105 5.35862 5.40307 5.49562 5.55412 5.67129 5.69662 5.78895 5.87835 6.22302 6.29453 6.46936 6.55726 6.91413 7.43581 8.92390 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.017142 B = 0.004168 C = 0.003938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1633.066390 B = 6716.397318 C = 7107.680696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.101 4.101 3 C 0.221 3.779 4 H -0.007 1.007 5 C -0.544 4.544 6 H 0.057 0.943 7 C 0.022 3.978 8 N -0.909 5.909 9 Si 0.953 3.047 10 H -0.275 1.275 11 H -0.285 1.285 12 H -0.271 1.271 13 N -0.652 5.652 14 C 0.105 3.895 15 H 0.117 0.883 16 C -0.130 4.130 17 C -0.063 4.063 18 C -0.159 4.159 19 C 0.125 3.875 20 O -0.331 6.331 21 C 0.018 3.982 22 C -0.212 4.212 23 C -0.048 4.048 24 C 0.418 3.582 25 F -0.184 7.184 26 F -0.191 7.191 27 F -0.184 7.184 28 H 0.036 0.964 29 H 0.046 0.954 30 H 0.058 0.942 31 H 0.063 0.937 32 H 0.030 0.970 33 H 0.262 0.738 34 H 0.340 0.660 35 H 0.144 0.856 36 H 0.148 0.852 37 H 0.062 0.938 38 H 0.063 0.937 39 H 0.121 0.879 40 H 0.148 0.852 41 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.894 5.656 13.699 18.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.139 4.139 3 C 0.114 3.886 4 H 0.011 0.989 5 C -0.582 4.582 6 H 0.075 0.925 7 C -0.178 4.178 8 N -0.548 5.548 9 Si 0.779 3.221 10 H -0.201 1.201 11 H -0.211 1.211 12 H -0.196 1.196 13 N -0.282 5.282 14 C -0.009 4.009 15 H 0.134 0.866 16 C -0.131 4.131 17 C -0.082 4.082 18 C -0.178 4.178 19 C 0.080 3.920 20 O -0.245 6.245 21 C -0.077 4.077 22 C -0.230 4.230 23 C -0.066 4.066 24 C 0.362 3.638 25 F -0.165 7.165 26 F -0.172 7.172 27 F -0.166 7.166 28 H 0.055 0.945 29 H 0.066 0.934 30 H 0.077 0.923 31 H 0.081 0.919 32 H 0.049 0.951 33 H 0.071 0.929 34 H 0.160 0.840 35 H 0.162 0.838 36 H 0.166 0.834 37 H 0.080 0.920 38 H 0.082 0.918 39 H 0.139 0.861 40 H 0.166 0.834 41 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -11.399 5.028 13.778 18.576 hybrid contribution 1.961 0.918 -0.977 2.375 sum -9.438 5.946 12.801 16.980 Atomic orbital electron populations 1.21734 0.96694 1.00459 1.00424 1.21385 0.94099 0.98213 1.00247 1.19123 0.93597 0.91740 0.84183 0.98910 1.21663 0.92598 1.38482 1.05472 0.92524 1.25576 1.02129 0.94761 0.95383 1.69991 1.36351 1.38723 1.09729 0.85634 0.80869 0.78515 0.77069 1.20090 1.21108 1.19589 1.60878 1.06344 1.30742 1.30277 1.21823 0.95640 0.84300 0.99107 0.86558 1.19286 0.93606 1.07279 0.92892 1.20985 0.92008 0.96031 0.99152 1.20530 1.01216 1.06924 0.89109 1.19218 0.90079 0.95596 0.87145 1.86038 1.36297 1.88433 1.13708 1.23342 0.99297 1.02176 0.82855 1.21380 0.92629 1.09025 1.00001 1.20849 1.00255 0.94341 0.91205 1.22179 0.75185 0.92548 0.73904 1.93114 1.77255 1.89687 1.56465 1.93223 1.76627 1.97045 1.50321 1.93139 1.51061 1.77101 1.95273 0.94475 0.93443 0.92287 0.91887 0.95077 0.92856 0.83978 0.83837 0.83427 0.91960 0.91837 0.86113 0.83402 0.85677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.13 8.73 71.98 0.63 -4.50 16 2 C -0.10 -4.66 5.45 30.60 0.17 -4.49 16 3 C 0.22 10.51 1.73 44.17 0.08 10.59 16 4 H -0.01 -0.36 6.75 -2.38 -0.02 -0.37 16 5 C -0.54 -28.73 8.60 25.60 0.22 -28.50 16 6 H 0.06 2.95 7.42 -2.91 -0.02 2.93 16 7 C 0.02 1.17 5.29 84.66 0.45 1.62 16 8 N -0.91 -50.81 11.29 21.45 0.24 -50.57 16 9 Si 0.95 42.91 29.54 68.60 2.03 44.94 16 10 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 11 H -0.29 -12.72 7.11 99.48 0.71 -12.01 16 12 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 13 N -0.65 -25.60 5.16 -477.16 -2.46 -28.06 16 14 C 0.10 3.56 1.20 44.17 0.05 3.61 16 15 H 0.12 4.02 6.09 -2.39 -0.01 4.01 16 16 C -0.13 -3.81 4.40 -19.85 -0.09 -3.90 16 17 C -0.06 -1.62 9.66 22.25 0.22 -1.40 16 18 C -0.16 -3.75 9.99 22.36 0.22 -3.53 16 19 C 0.13 2.98 6.69 22.50 0.15 3.13 16 20 O -0.33 -6.98 10.50 -92.43 -0.97 -7.95 16 21 C 0.02 0.23 9.81 113.37 1.11 1.34 16 22 C -0.21 -5.04 9.04 22.37 0.20 -4.83 16 23 C -0.05 -1.34 8.56 22.25 0.19 -1.15 16 24 C 0.42 14.68 2.69 71.98 0.19 14.87 16 25 F -0.18 -6.26 15.54 44.97 0.70 -5.57 16 26 F -0.19 -7.86 16.15 44.97 0.73 -7.13 16 27 F -0.18 -6.00 17.02 44.97 0.77 -5.24 16 28 H 0.04 1.38 8.04 -2.39 -0.02 1.36 16 29 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 30 H 0.06 2.07 6.62 -2.39 -0.02 2.05 16 31 H 0.06 3.31 5.95 -2.38 -0.01 3.30 16 32 H 0.03 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.26 14.02 8.31 -92.71 -0.77 13.25 16 34 H 0.34 13.54 6.73 -89.69 -0.60 12.94 16 35 H 0.14 3.14 8.03 -2.91 -0.02 3.12 16 36 H 0.15 2.85 8.06 -2.91 -0.02 2.83 16 37 H 0.06 0.75 7.66 -2.39 -0.02 0.73 16 38 H 0.06 0.73 7.66 -2.39 -0.02 0.71 16 39 H 0.12 0.98 8.14 -2.39 -0.02 0.96 16 40 H 0.15 2.74 6.30 -2.91 -0.02 2.72 16 41 H 0.13 3.55 7.40 -2.91 -0.02 3.53 16 Total: -1.00 -59.61 343.79 5.28 -54.33 By element: Atomic # 1 Polarization: 21.95 SS G_CDS: 0.46 Total: 22.41 kcal Atomic # 6 Polarization: -20.95 SS G_CDS: 3.79 Total: -17.16 kcal Atomic # 7 Polarization: -76.41 SS G_CDS: -2.22 Total: -78.63 kcal Atomic # 8 Polarization: -6.98 SS G_CDS: -0.97 Total: -7.95 kcal Atomic # 9 Polarization: -20.12 SS G_CDS: 2.19 Total: -17.93 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 2.03 Total: 44.94 kcal Total: -59.61 5.28 -54.33 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255157251.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -130.137 kcal (2) G-P(sol) polarization free energy of solvation -59.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -189.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -184.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds