Wall clock time and date at job start Tue Mar 31 2020 13:00:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.46856 * 2 1 4 4 H 1.08994 * 109.46881 * 54.31932 * 3 2 1 5 5 C 1.50701 * 109.46889 * 174.31338 * 3 2 1 6 6 H 1.08003 * 119.99423 * 119.99893 * 5 3 2 7 7 C 1.37871 * 120.00451 * 300.00258 * 5 3 2 8 8 N 1.31514 * 120.00183 * 179.97438 * 7 5 3 9 9 Si 1.86805 * 119.99830 * 0.02562 * 7 5 3 10 10 H 1.48492 * 109.47032 * 90.00115 * 9 7 5 11 11 H 1.48504 * 109.47000 * 209.99949 * 9 7 5 12 12 H 1.48494 * 109.47031 * 329.99998 * 9 7 5 13 13 N 1.46896 * 109.47059 * 294.31814 * 3 2 1 14 14 C 1.46900 * 110.99928 * 155.99324 * 13 3 2 15 15 H 1.09001 * 109.46863 * 30.05603 * 14 13 3 16 16 C 1.50697 * 109.47186 * 150.05561 * 14 13 3 17 17 C 1.38166 * 120.02779 * 25.00371 * 16 14 13 18 18 C 1.38244 * 120.05482 * 179.97438 * 17 16 14 19 19 C 1.38286 * 120.11580 * 0.02562 * 18 17 16 20 20 C 1.38118 * 120.05125 * 0.02562 * 19 18 17 21 21 C 1.38708 * 120.03133 * 204.72273 * 16 14 13 22 22 O 1.35910 * 120.05344 * 0.02562 * 21 16 14 23 23 C 1.42895 * 117.00103 * 180.02562 * 22 21 16 24 24 C 1.53003 * 109.47130 * 270.05708 * 14 13 3 25 25 F 1.39902 * 109.46873 * 64.29895 * 24 14 13 26 26 F 1.39896 * 109.46923 * 184.29947 * 24 14 13 27 27 F 1.39898 * 109.46743 * 304.30271 * 24 14 13 28 28 H 1.08999 * 109.47306 * 306.48377 * 1 2 3 29 29 H 1.08995 * 109.47215 * 66.48871 * 1 2 3 30 30 H 1.09003 * 109.46901 * 186.48852 * 1 2 3 31 31 H 1.08998 * 109.47038 * 240.00436 * 2 1 3 32 32 H 1.08995 * 109.47412 * 120.00018 * 2 1 3 33 33 H 0.97002 * 120.00260 * 179.97438 * 8 7 5 34 34 H 1.00894 * 111.00336 * 32.03547 * 13 3 2 35 35 H 1.08002 * 119.97258 * 359.97108 * 17 16 14 36 36 H 1.08003 * 119.94178 * 179.97438 * 18 17 16 37 37 H 1.08002 * 119.97745 * 180.02562 * 19 18 17 38 38 H 1.08010 * 120.02700 * 179.97438 * 20 19 18 39 39 H 1.09003 * 109.46750 * 299.99845 * 23 22 21 40 40 H 1.09000 * 109.47636 * 59.99827 * 23 22 21 41 41 H 1.08998 * 109.47177 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5959 1.9848 0.8347 5 6 3.5404 1.4449 0.1408 6 1 4.1543 1.8864 -0.6303 7 6 4.1293 0.8834 1.2538 8 7 5.4387 0.8851 1.3764 9 14 3.0673 0.1191 2.5871 10 1 2.8501 -1.3182 2.2835 11 1 3.7499 0.2502 3.8994 12 1 1.7580 0.8177 2.6381 13 7 1.6654 2.0943 -1.2621 14 6 1.6076 3.5536 -1.1041 15 1 2.3197 3.8648 -0.3397 16 6 1.9549 4.2148 -2.4130 17 6 1.7597 3.5390 -3.6022 18 6 2.0775 4.1451 -4.8033 19 6 2.5919 5.4287 -4.8179 20 6 2.7899 6.1081 -3.6318 21 6 2.4652 5.5045 -2.4254 22 8 2.6533 6.1734 -1.2573 23 6 3.1818 7.4980 -1.3460 24 6 0.1954 3.9655 -0.6834 25 9 -0.0900 3.4312 0.5777 26 9 0.1137 5.3610 -0.6281 27 9 -0.7287 3.4808 -1.6152 28 1 -0.3634 0.6110 0.8262 29 1 -0.3633 0.4099 -0.9423 30 1 -0.3633 -1.0211 0.1161 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 5.8530 0.4904 2.1596 34 1 0.7897 1.7333 -1.6096 35 1 1.3585 2.5362 -3.5933 36 1 1.9246 3.6150 -5.7317 37 1 2.8391 5.9003 -5.7576 38 1 3.1920 7.1105 -3.6437 39 1 4.1596 7.4675 -1.8268 40 1 2.5069 8.1199 -1.9342 41 1 3.2825 7.9168 -0.3447 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255163547.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:00:54 Heat of formation + Delta-G solvation = -155.816430 kcal Electronic energy + Delta-G solvation = -28829.114963 eV Core-core repulsion = 24487.748700 eV Total energy + Delta-G solvation = -4341.366262 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.134 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.71871 -47.23341 -47.16302 -40.09299 -37.55829 -36.70051 -33.65123 -31.99886 -30.27609 -29.97863 -27.88571 -27.06876 -26.38116 -23.48193 -22.57379 -21.91784 -20.80596 -20.03187 -18.22269 -18.07682 -17.82034 -17.47288 -16.61484 -16.05060 -15.69538 -15.54396 -14.90504 -14.38529 -14.20148 -14.12816 -14.03552 -13.80362 -13.63308 -13.49543 -13.34248 -13.33103 -12.93180 -12.75772 -12.67238 -12.37488 -12.17205 -11.92258 -11.81518 -11.65708 -11.26822 -11.00386 -10.96732 -10.75055 -10.54342 -10.31570 -10.09373 -9.48124 -9.29943 -8.69475 -8.55108 -7.99883 -7.79158 -6.06483 -4.04764 1.43334 1.63201 3.17829 3.25094 3.37819 3.38352 3.42821 3.88587 4.23662 4.38314 4.39359 4.43855 4.79344 4.92494 5.10295 5.16296 5.21202 5.22230 5.25664 5.46872 5.55301 5.58859 5.69816 5.76294 5.82903 5.93074 5.96766 6.16462 6.43108 6.45375 6.53595 6.57364 6.60132 6.66735 6.76939 6.95817 7.04576 7.53024 7.59157 7.65404 7.95188 8.63307 9.05324 9.55228 11.06410 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.013865 B = 0.005674 C = 0.005227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2019.032489 B = 4933.891336 C = 5355.501282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.135 4.135 3 C 0.180 3.820 4 H 0.017 0.983 5 C -0.500 4.500 6 H 0.084 0.916 7 C 0.071 3.929 8 N -0.897 5.897 9 Si 0.877 3.123 10 H -0.278 1.278 11 H -0.296 1.296 12 H -0.265 1.265 13 N -0.648 5.648 14 C 0.109 3.891 15 H 0.138 0.862 16 C -0.111 4.111 17 C -0.037 4.037 18 C -0.166 4.166 19 C -0.078 4.078 20 C -0.217 4.217 21 C 0.148 3.852 22 O -0.306 6.306 23 C 0.029 3.971 24 C 0.417 3.583 25 F -0.182 7.182 26 F -0.182 7.182 27 F -0.189 7.189 28 H 0.049 0.951 29 H 0.048 0.952 30 H 0.048 0.952 31 H 0.070 0.930 32 H 0.058 0.942 33 H 0.264 0.736 34 H 0.330 0.670 35 H 0.137 0.863 36 H 0.122 0.878 37 H 0.121 0.879 38 H 0.126 0.874 39 H 0.055 0.945 40 H 0.052 0.948 41 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.959 9.843 -8.931 16.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.172 4.172 3 C 0.072 3.928 4 H 0.035 0.965 5 C -0.539 4.539 6 H 0.102 0.898 7 C -0.131 4.131 8 N -0.535 5.535 9 Si 0.707 3.293 10 H -0.205 1.205 11 H -0.224 1.224 12 H -0.190 1.190 13 N -0.279 5.279 14 C -0.004 4.004 15 H 0.156 0.844 16 C -0.112 4.112 17 C -0.055 4.055 18 C -0.184 4.184 19 C -0.096 4.096 20 C -0.235 4.235 21 C 0.101 3.899 22 O -0.219 6.219 23 C -0.066 4.066 24 C 0.360 3.640 25 F -0.164 7.164 26 F -0.163 7.163 27 F -0.171 7.171 28 H 0.068 0.932 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.089 0.911 32 H 0.076 0.924 33 H 0.074 0.926 34 H 0.150 0.850 35 H 0.154 0.846 36 H 0.140 0.860 37 H 0.139 0.861 38 H 0.144 0.856 39 H 0.073 0.927 40 H 0.071 0.929 41 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -8.223 9.704 -8.832 15.485 hybrid contribution -1.349 -0.144 1.252 1.846 sum -9.572 9.560 -7.580 15.507 Atomic orbital electron populations 1.21947 0.98026 1.00871 1.00917 1.22105 0.93059 0.99901 1.02181 1.19923 0.97568 0.89865 0.85434 0.96543 1.20961 0.88627 1.38132 1.06150 0.89832 1.24914 0.94743 0.95798 0.97633 1.69877 1.08916 1.45494 1.29216 0.87019 0.81037 0.79885 0.81379 1.20475 1.22363 1.18964 1.60662 1.35557 0.99039 1.32637 1.21508 0.89437 0.91857 0.97606 0.84401 1.18790 1.05911 0.91833 0.94669 1.20869 0.95104 0.99194 0.90371 1.21020 1.03673 0.95772 0.97965 1.20897 0.96957 0.94608 0.97145 1.21095 1.08789 1.01563 0.92084 1.18816 0.94602 0.91338 0.85103 1.86147 1.79134 1.28482 1.28146 1.23029 0.98027 0.81669 1.03857 1.22238 0.91757 0.75150 0.74834 1.93176 1.94837 1.86041 1.42313 1.93158 1.96941 1.30050 1.96163 1.93104 1.69953 1.87932 1.66082 0.93231 0.93285 0.93335 0.91079 0.92409 0.92648 0.84980 0.84570 0.85955 0.86129 0.85600 0.92673 0.92944 0.88313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.76 9.62 37.16 0.36 -2.41 16 2 C -0.13 -2.82 5.02 -26.73 -0.13 -2.95 16 3 C 0.18 4.10 1.30 -68.86 -0.09 4.01 16 4 H 0.02 0.41 5.38 -51.93 -0.28 0.13 16 5 C -0.50 -13.74 9.05 -34.44 -0.31 -14.05 16 6 H 0.08 2.55 8.06 -52.48 -0.42 2.12 16 7 C 0.07 2.02 5.45 -17.82 -0.10 1.92 16 8 N -0.90 -27.14 13.96 55.43 0.77 -26.36 16 9 Si 0.88 21.65 24.41 -169.99 -4.15 17.50 16 10 H -0.28 -6.65 6.82 56.52 0.39 -6.27 16 11 H -0.30 -7.38 7.11 56.52 0.40 -6.97 16 12 H -0.26 -6.32 6.53 56.52 0.37 -5.95 16 13 N -0.65 -12.74 4.94 -102.17 -0.50 -13.25 16 14 C 0.11 2.06 1.89 -68.86 -0.13 1.93 16 15 H 0.14 2.95 7.12 -51.93 -0.37 2.58 16 16 C -0.11 -1.90 4.73 -104.48 -0.49 -2.39 16 17 C -0.04 -0.57 9.32 -39.61 -0.37 -0.94 16 18 C -0.17 -2.16 10.04 -39.56 -0.40 -2.56 16 19 C -0.08 -0.95 10.04 -39.61 -0.40 -1.35 16 20 C -0.22 -2.87 9.04 -39.43 -0.36 -3.23 16 21 C 0.15 2.36 6.22 -39.22 -0.24 2.12 16 22 O -0.31 -4.84 8.65 -19.46 -0.17 -5.01 16 23 C 0.03 0.32 9.81 101.05 0.99 1.31 16 24 C 0.42 7.43 2.76 37.16 0.10 7.53 16 25 F -0.18 -3.47 15.60 2.25 0.04 -3.44 16 26 F -0.18 -3.18 15.56 2.25 0.04 -3.15 16 27 F -0.19 -3.14 16.22 2.25 0.04 -3.10 16 28 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.05 0.76 6.68 -51.93 -0.35 0.41 16 30 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.07 1.46 8.14 -51.93 -0.42 1.03 16 32 H 0.06 1.30 3.21 -51.93 -0.17 1.14 16 33 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 34 H 0.33 5.80 5.22 -39.29 -0.21 5.59 16 35 H 0.14 2.00 7.04 -52.49 -0.37 1.63 16 36 H 0.12 1.28 8.06 -52.48 -0.42 0.86 16 37 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 38 H 0.13 1.33 6.30 -52.48 -0.33 1.00 16 39 H 0.05 0.54 7.65 -51.93 -0.40 0.14 16 40 H 0.05 0.48 7.68 -51.93 -0.40 0.08 16 41 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 335.42 15.07 5.05 5.05 Total: -1.00 -30.70 335.42 -5.46 -36.17 By element: Atomic # 1 Polarization: 11.66 SS G_CDS: -5.01 Total: 6.65 kcal Atomic # 6 Polarization: -9.49 SS G_CDS: -1.57 Total: -11.06 kcal Atomic # 7 Polarization: -39.88 SS G_CDS: 0.27 Total: -39.61 kcal Atomic # 8 Polarization: -4.84 SS G_CDS: -0.17 Total: -5.01 kcal Atomic # 9 Polarization: -9.79 SS G_CDS: 0.11 Total: -9.69 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -4.15 Total: 17.50 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -30.70 -5.46 -36.17 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255163547.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.649 kcal (2) G-P(sol) polarization free energy of solvation -30.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds