Wall clock time and date at job start Tue Mar 31 2020 13:00:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.46856 * 2 1 4 4 H 1.08994 * 109.46881 * 54.31932 * 3 2 1 5 5 C 1.50701 * 109.46889 * 174.31338 * 3 2 1 6 6 H 1.08003 * 119.99423 * 119.99893 * 5 3 2 7 7 C 1.37871 * 120.00451 * 300.00258 * 5 3 2 8 8 N 1.31514 * 120.00183 * 179.97438 * 7 5 3 9 9 Si 1.86805 * 119.99830 * 0.02562 * 7 5 3 10 10 H 1.48492 * 109.47032 * 90.00115 * 9 7 5 11 11 H 1.48504 * 109.47000 * 209.99949 * 9 7 5 12 12 H 1.48494 * 109.47031 * 329.99998 * 9 7 5 13 13 N 1.46896 * 109.47059 * 294.31814 * 3 2 1 14 14 C 1.46900 * 110.99928 * 155.99324 * 13 3 2 15 15 H 1.09001 * 109.46863 * 30.05603 * 14 13 3 16 16 C 1.50697 * 109.47186 * 150.05561 * 14 13 3 17 17 C 1.38166 * 120.02779 * 25.00371 * 16 14 13 18 18 C 1.38244 * 120.05482 * 179.97438 * 17 16 14 19 19 C 1.38286 * 120.11580 * 0.02562 * 18 17 16 20 20 C 1.38118 * 120.05125 * 0.02562 * 19 18 17 21 21 C 1.38708 * 120.03133 * 204.72273 * 16 14 13 22 22 O 1.35910 * 120.05344 * 0.02562 * 21 16 14 23 23 C 1.42895 * 117.00103 * 180.02562 * 22 21 16 24 24 C 1.53003 * 109.47130 * 270.05708 * 14 13 3 25 25 F 1.39902 * 109.46873 * 64.29895 * 24 14 13 26 26 F 1.39896 * 109.46923 * 184.29947 * 24 14 13 27 27 F 1.39898 * 109.46743 * 304.30271 * 24 14 13 28 28 H 1.08999 * 109.47306 * 306.48377 * 1 2 3 29 29 H 1.08995 * 109.47215 * 66.48871 * 1 2 3 30 30 H 1.09003 * 109.46901 * 186.48852 * 1 2 3 31 31 H 1.08998 * 109.47038 * 240.00436 * 2 1 3 32 32 H 1.08995 * 109.47412 * 120.00018 * 2 1 3 33 33 H 0.97002 * 120.00260 * 179.97438 * 8 7 5 34 34 H 1.00894 * 111.00336 * 32.03547 * 13 3 2 35 35 H 1.08002 * 119.97258 * 359.97108 * 17 16 14 36 36 H 1.08003 * 119.94178 * 179.97438 * 18 17 16 37 37 H 1.08002 * 119.97745 * 180.02562 * 19 18 17 38 38 H 1.08010 * 120.02700 * 179.97438 * 20 19 18 39 39 H 1.09003 * 109.46750 * 299.99845 * 23 22 21 40 40 H 1.09000 * 109.47636 * 59.99827 * 23 22 21 41 41 H 1.08998 * 109.47177 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5959 1.9848 0.8347 5 6 3.5404 1.4449 0.1408 6 1 4.1543 1.8864 -0.6303 7 6 4.1293 0.8834 1.2538 8 7 5.4387 0.8851 1.3764 9 14 3.0673 0.1191 2.5871 10 1 2.8501 -1.3182 2.2835 11 1 3.7499 0.2502 3.8994 12 1 1.7580 0.8177 2.6381 13 7 1.6654 2.0943 -1.2621 14 6 1.6076 3.5536 -1.1041 15 1 2.3197 3.8648 -0.3397 16 6 1.9549 4.2148 -2.4130 17 6 1.7597 3.5390 -3.6022 18 6 2.0775 4.1451 -4.8033 19 6 2.5919 5.4287 -4.8179 20 6 2.7899 6.1081 -3.6318 21 6 2.4652 5.5045 -2.4254 22 8 2.6533 6.1734 -1.2573 23 6 3.1818 7.4980 -1.3460 24 6 0.1954 3.9655 -0.6834 25 9 -0.0900 3.4312 0.5777 26 9 0.1137 5.3610 -0.6281 27 9 -0.7287 3.4808 -1.6152 28 1 -0.3634 0.6110 0.8262 29 1 -0.3633 0.4099 -0.9423 30 1 -0.3633 -1.0211 0.1161 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 5.8530 0.4904 2.1596 34 1 0.7897 1.7333 -1.6096 35 1 1.3585 2.5362 -3.5933 36 1 1.9246 3.6150 -5.7317 37 1 2.8391 5.9003 -5.7576 38 1 3.1920 7.1105 -3.6437 39 1 4.1596 7.4675 -1.8268 40 1 2.5069 8.1199 -1.9342 41 1 3.2825 7.9168 -0.3447 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255163547.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:00:53 Heat of formation + Delta-G solvation = -175.418317 kcal Electronic energy + Delta-G solvation = -28829.964964 eV Core-core repulsion = 24487.748700 eV Total energy + Delta-G solvation = -4342.216264 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.134 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -51.16338 -48.67626 -48.59995 -41.19798 -38.94276 -38.03868 -35.22395 -34.00610 -31.56814 -31.03709 -29.47975 -28.10798 -28.00306 -24.89191 -24.23086 -23.03274 -22.08415 -21.77954 -19.62627 -19.51448 -19.22094 -18.81273 -18.54421 -17.27117 -16.94339 -16.67309 -16.56359 -15.91253 -15.62112 -15.48025 -15.33864 -15.23682 -15.06783 -14.86541 -14.78410 -14.75370 -14.53646 -14.25416 -13.87802 -13.82676 -13.64351 -13.52553 -13.05360 -12.85477 -12.77180 -12.52536 -12.26228 -12.18286 -11.94549 -11.92641 -11.61852 -11.33705 -11.26253 -10.69556 -9.80097 -9.47921 -9.08568 -8.27609 -6.29589 0.32512 0.55302 1.27611 1.34857 1.43461 1.74501 2.30673 2.43530 2.66290 2.77540 2.96500 3.05091 3.08046 3.37294 3.83934 3.99668 4.14380 4.18392 4.23889 4.30738 4.34985 4.41525 4.42469 4.49723 4.60497 4.73892 4.78614 4.84246 4.97937 5.05548 5.08017 5.13356 5.33358 5.38993 5.52585 5.61900 5.66129 5.86879 5.94043 6.21916 6.49517 6.64174 6.77897 7.33922 8.89240 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.013865 B = 0.005674 C = 0.005227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2019.032489 B = 4933.891336 C = 5355.501282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.135 4.135 3 C 0.186 3.814 4 H 0.007 0.993 5 C -0.498 4.498 6 H 0.037 0.963 7 C 0.015 3.985 8 N -0.946 5.946 9 Si 0.938 3.062 10 H -0.261 1.261 11 H -0.299 1.299 12 H -0.252 1.252 13 N -0.647 5.647 14 C 0.116 3.884 15 H 0.101 0.899 16 C -0.144 4.144 17 C -0.052 4.052 18 C -0.166 4.166 19 C -0.071 4.071 20 C -0.217 4.217 21 C 0.127 3.873 22 O -0.337 6.337 23 C 0.020 3.980 24 C 0.424 3.576 25 F -0.190 7.190 26 F -0.179 7.179 27 F -0.178 7.178 28 H 0.044 0.956 29 H 0.066 0.934 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.044 0.956 33 H 0.265 0.735 34 H 0.343 0.657 35 H 0.136 0.864 36 H 0.151 0.849 37 H 0.159 0.841 38 H 0.153 0.847 39 H 0.064 0.936 40 H 0.072 0.928 41 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.873 10.147 -10.439 18.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.173 4.173 3 C 0.078 3.922 4 H 0.024 0.976 5 C -0.537 4.537 6 H 0.055 0.945 7 C -0.182 4.182 8 N -0.587 5.587 9 Si 0.765 3.235 10 H -0.187 1.187 11 H -0.227 1.227 12 H -0.176 1.176 13 N -0.279 5.279 14 C 0.003 3.997 15 H 0.119 0.881 16 C -0.146 4.146 17 C -0.070 4.070 18 C -0.184 4.184 19 C -0.088 4.088 20 C -0.236 4.236 21 C 0.081 3.919 22 O -0.251 6.251 23 C -0.074 4.074 24 C 0.367 3.633 25 F -0.172 7.172 26 F -0.160 7.160 27 F -0.160 7.160 28 H 0.063 0.937 29 H 0.085 0.915 30 H 0.093 0.907 31 H 0.091 0.909 32 H 0.062 0.938 33 H 0.074 0.926 34 H 0.166 0.834 35 H 0.154 0.846 36 H 0.169 0.831 37 H 0.177 0.823 38 H 0.171 0.829 39 H 0.083 0.917 40 H 0.091 0.909 41 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -10.167 10.019 -10.364 17.640 hybrid contribution -0.681 -0.098 1.589 1.732 sum -10.849 9.921 -8.775 17.121 Atomic orbital electron populations 1.21885 0.94697 1.02732 1.01746 1.22004 0.96017 0.97660 1.01579 1.19673 0.94375 0.91661 0.86510 0.97590 1.21157 0.91035 1.36732 1.04727 0.94455 1.25702 0.95823 0.96590 1.00117 1.70030 1.10945 1.47400 1.30287 0.86010 0.79597 0.79905 0.77942 1.18658 1.22733 1.17587 1.60494 1.36616 0.99735 1.31067 1.21264 0.89173 0.91172 0.98083 0.88083 1.18854 1.08515 0.93017 0.94166 1.21010 0.95857 0.99356 0.90825 1.21386 1.02634 0.96306 0.98072 1.21386 0.95028 0.94141 0.98291 1.21468 1.07969 1.02750 0.91369 1.19075 0.95236 0.91377 0.86193 1.86102 1.79627 1.30517 1.28868 1.23319 0.98822 0.80044 1.05252 1.21985 0.91448 0.75238 0.74582 1.93157 1.94871 1.86186 1.42957 1.93156 1.96907 1.29835 1.96139 1.93117 1.69436 1.87803 1.65623 0.93689 0.91534 0.90659 0.90923 0.93791 0.92624 0.83432 0.84638 0.83095 0.82319 0.82921 0.91741 0.90911 0.87205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.85 9.62 71.98 0.69 -4.16 16 2 C -0.13 -5.47 5.02 30.60 0.15 -5.32 16 3 C 0.19 8.60 1.30 44.17 0.06 8.66 16 4 H 0.01 0.32 5.38 -2.39 -0.01 0.30 16 5 C -0.50 -28.50 9.05 25.60 0.23 -28.27 16 6 H 0.04 2.42 8.06 -2.91 -0.02 2.40 16 7 C 0.01 0.87 5.45 84.65 0.46 1.33 16 8 N -0.95 -59.54 13.96 21.44 0.30 -59.24 16 9 Si 0.94 45.20 24.41 68.60 1.67 46.87 16 10 H -0.26 -11.78 6.82 99.48 0.68 -11.10 16 11 H -0.30 -14.48 7.11 99.48 0.71 -13.77 16 12 H -0.25 -11.48 6.53 99.48 0.65 -10.83 16 13 N -0.65 -25.78 4.94 -477.16 -2.36 -28.13 16 14 C 0.12 4.52 1.89 44.17 0.08 4.61 16 15 H 0.10 4.64 7.12 -2.39 -0.02 4.62 16 16 C -0.14 -5.01 4.73 -19.77 -0.09 -5.10 16 17 C -0.05 -1.57 9.32 22.25 0.21 -1.36 16 18 C -0.17 -3.92 10.04 22.28 0.22 -3.69 16 19 C -0.07 -1.50 10.04 22.25 0.22 -1.28 16 20 C -0.22 -5.30 9.04 22.36 0.20 -5.10 16 21 C 0.13 4.06 6.22 22.51 0.14 4.20 16 22 O -0.34 -10.86 8.65 -92.54 -0.80 -11.66 16 23 C 0.02 0.41 9.81 113.37 1.11 1.53 16 24 C 0.42 15.11 2.76 71.98 0.20 15.31 16 25 F -0.19 -7.21 15.60 44.97 0.70 -6.51 16 26 F -0.18 -6.28 15.56 44.97 0.70 -5.58 16 27 F -0.18 -5.72 16.22 44.97 0.73 -4.99 16 28 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 29 H 0.07 1.86 6.68 -2.39 -0.02 1.84 16 30 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 31 H 0.07 2.90 8.14 -2.39 -0.02 2.88 16 32 H 0.04 1.91 3.21 -2.39 -0.01 1.90 16 33 H 0.26 15.65 8.31 -92.71 -0.77 14.88 16 34 H 0.34 11.82 5.22 -89.70 -0.47 11.36 16 35 H 0.14 3.91 7.04 -2.91 -0.02 3.89 16 36 H 0.15 2.63 8.06 -2.91 -0.02 2.60 16 37 H 0.16 2.15 8.06 -2.91 -0.02 2.12 16 38 H 0.15 2.78 6.30 -2.91 -0.02 2.76 16 39 H 0.06 1.20 7.65 -2.39 -0.02 1.18 16 40 H 0.07 1.20 7.68 -2.39 -0.02 1.18 16 41 H 0.11 1.97 8.14 -2.39 -0.02 1.95 16 Total: -1.00 -69.66 335.42 5.36 -64.30 By element: Atomic # 1 Polarization: 23.08 SS G_CDS: 0.52 Total: 23.60 kcal Atomic # 6 Polarization: -22.54 SS G_CDS: 3.89 Total: -18.65 kcal Atomic # 7 Polarization: -85.31 SS G_CDS: -2.06 Total: -87.37 kcal Atomic # 8 Polarization: -10.86 SS G_CDS: -0.80 Total: -11.66 kcal Atomic # 9 Polarization: -19.22 SS G_CDS: 2.13 Total: -17.09 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 1.67 Total: 46.87 kcal Total: -69.66 5.36 -64.30 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255163547.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.115 kcal (2) G-P(sol) polarization free energy of solvation -69.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -180.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds