Wall clock time and date at job start Tue Mar 31 2020 13:01:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47011 * 2 1 4 4 H 1.08997 * 109.47005 * 174.00911 * 3 2 1 5 5 C 1.50699 * 109.47444 * 54.01061 * 3 2 1 6 6 H 1.08004 * 119.99531 * 240.00295 * 5 3 2 7 7 C 1.37876 * 120.00330 * 59.99635 * 5 3 2 8 8 N 1.31510 * 119.99819 * 0.02562 * 7 5 3 9 9 Si 1.86795 * 119.99866 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47762 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.47125 * 120.00294 * 9 7 5 12 12 H 1.48500 * 109.47195 * 240.00027 * 9 7 5 13 13 N 1.46900 * 109.46803 * 294.00713 * 3 2 1 14 14 C 1.46904 * 111.00003 * 274.10423 * 13 3 2 15 15 H 1.09000 * 109.47070 * 31.92299 * 14 13 3 16 16 C 1.50698 * 109.47208 * 151.92698 * 14 13 3 17 17 C 1.38164 * 120.02640 * 24.99702 * 16 14 13 18 18 C 1.38243 * 120.05295 * 180.02562 * 17 16 14 19 19 C 1.38284 * 120.11406 * 359.97438 * 18 17 16 20 20 C 1.38119 * 120.05640 * 0.02767 * 19 18 17 21 21 C 1.38711 * 120.02656 * 204.72605 * 16 14 13 22 22 O 1.35894 * 120.05609 * 0.02562 * 21 16 14 23 23 C 1.42900 * 116.99938 * 180.02562 * 22 21 16 24 24 C 1.52999 * 109.47143 * 271.92827 * 14 13 3 25 25 F 1.39907 * 109.47127 * 299.99463 * 24 14 13 26 26 F 1.39891 * 109.47775 * 59.99843 * 24 14 13 27 27 F 1.39905 * 109.47182 * 180.02562 * 24 14 13 28 28 H 1.09005 * 109.47162 * 178.74881 * 1 2 3 29 29 H 1.09000 * 109.47523 * 298.75761 * 1 2 3 30 30 H 1.08999 * 109.46850 * 58.75601 * 1 2 3 31 31 H 1.08992 * 109.47466 * 239.99305 * 2 1 3 32 32 H 1.09000 * 109.46788 * 119.99423 * 2 1 3 33 33 H 0.96998 * 119.99853 * 180.02562 * 8 7 5 34 34 H 1.00893 * 111.00062 * 38.05766 * 13 3 2 35 35 H 1.08001 * 119.97782 * 359.97438 * 17 16 14 36 36 H 1.08007 * 119.94396 * 179.97438 * 18 17 16 37 37 H 1.08008 * 119.97006 * 179.97438 * 19 18 17 38 38 H 1.07998 * 120.02670 * 179.97438 * 20 19 18 39 39 H 1.09000 * 109.47439 * 179.97438 * 23 22 21 40 40 H 1.09005 * 109.47027 * 299.99943 * 23 22 21 41 41 H 1.09001 * 109.47280 * 59.99200 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1246 1.4444 0.1073 5 6 1.4203 2.1945 1.1496 6 1 0.8136 3.0675 0.9593 7 6 1.6276 1.7679 2.4442 8 7 2.3667 0.7050 2.6759 9 14 0.8589 2.6996 3.8690 10 1 0.0788 3.8496 3.3452 11 1 -0.0431 1.7932 4.6241 12 1 1.9292 3.1966 4.7705 13 7 1.6719 2.0919 -1.2652 14 6 2.6747 1.8253 -2.3051 15 1 3.1123 0.8401 -2.1437 16 6 2.0166 1.8670 -3.6601 17 6 0.8603 2.6003 -3.8448 18 6 0.2558 2.6385 -5.0875 19 6 0.8068 1.9437 -6.1487 20 6 1.9626 1.2092 -5.9692 21 6 2.5744 1.1738 -4.7243 22 8 3.7144 0.4559 -4.5463 23 6 4.2324 -0.2322 -5.6865 24 6 3.7732 2.8882 -2.2387 25 9 3.2117 4.1528 -2.4457 26 9 4.3842 2.8496 -0.9808 27 9 4.7280 2.6347 -3.2293 28 1 -0.3634 -1.0275 -0.0224 29 1 -0.3634 0.4944 0.9009 30 1 -0.3633 0.5330 -0.8786 31 1 1.8934 -0.5139 -0.8898 32 1 1.8933 -0.5138 0.8900 33 1 2.5123 0.4047 3.5866 34 1 0.7533 1.8028 -1.5662 35 1 0.4277 3.1434 -3.0176 36 1 -0.6483 3.2119 -5.2299 37 1 0.3323 1.9749 -7.1185 38 1 2.3922 0.6665 -6.7982 39 1 5.1422 -0.7640 -5.4077 40 1 3.4912 -0.9447 -6.0486 41 1 4.4592 0.4874 -6.4732 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255163550.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:01:01 Heat of formation + Delta-G solvation = -161.521086 kcal Electronic energy + Delta-G solvation = -28644.922192 eV Core-core repulsion = 24303.308558 eV Total energy + Delta-G solvation = -4341.613635 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.134 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.31153 -46.84979 -46.74398 -40.28993 -37.69460 -36.59114 -33.62836 -31.45470 -30.15822 -29.87204 -27.58757 -27.14947 -25.77395 -23.47418 -23.18543 -21.99340 -20.90928 -19.44354 -18.24772 -17.82290 -17.61557 -16.66409 -16.37384 -16.05350 -15.70005 -15.36527 -14.76093 -14.47804 -14.36961 -13.91545 -13.62770 -13.60026 -13.41709 -13.22643 -13.04092 -12.95799 -12.86639 -12.70968 -12.52450 -12.28666 -12.09474 -11.93817 -11.53295 -11.21242 -11.14239 -10.95608 -10.86079 -10.62788 -10.52857 -10.05443 -9.87419 -9.58479 -9.02232 -8.86104 -8.33214 -8.17082 -7.56775 -5.96858 -3.97908 1.25452 1.45126 3.25238 3.33583 3.41910 3.42983 3.46792 3.80838 4.36740 4.45860 4.54391 4.73301 4.80819 4.91415 5.04400 5.06184 5.16322 5.28099 5.35874 5.37665 5.41212 5.58141 5.66827 5.82623 5.99495 6.25554 6.31567 6.33088 6.41323 6.52489 6.53946 6.79749 6.85688 7.12735 7.20347 7.35579 7.45777 7.63205 7.84724 8.18169 8.32767 8.50389 9.06038 9.64900 11.10812 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.016930 B = 0.004795 C = 0.004558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1653.478950 B = 5838.503987 C = 6141.155340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.146 4.146 3 C 0.206 3.794 4 H 0.048 0.952 5 C -0.486 4.486 6 H 0.064 0.936 7 C 0.059 3.941 8 N -0.894 5.894 9 Si 0.894 3.106 10 H -0.273 1.273 11 H -0.287 1.287 12 H -0.286 1.286 13 N -0.668 5.668 14 C 0.097 3.903 15 H 0.091 0.909 16 C -0.132 4.132 17 C -0.051 4.051 18 C -0.161 4.161 19 C -0.076 4.076 20 C -0.216 4.216 21 C 0.147 3.853 22 O -0.306 6.306 23 C 0.029 3.971 24 C 0.462 3.538 25 F -0.180 7.180 26 F -0.172 7.172 27 F -0.191 7.191 28 H 0.023 0.977 29 H 0.068 0.932 30 H 0.028 0.972 31 H 0.011 0.989 32 H 0.096 0.904 33 H 0.259 0.741 34 H 0.344 0.656 35 H 0.146 0.854 36 H 0.126 0.874 37 H 0.123 0.877 38 H 0.127 0.873 39 H 0.099 0.901 40 H 0.053 0.947 41 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.296 -0.999 -17.751 17.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.185 4.185 3 C 0.099 3.901 4 H 0.066 0.934 5 C -0.525 4.525 6 H 0.082 0.918 7 C -0.142 4.142 8 N -0.534 5.534 9 Si 0.722 3.278 10 H -0.197 1.197 11 H -0.213 1.213 12 H -0.212 1.212 13 N -0.303 5.303 14 C -0.016 4.016 15 H 0.109 0.891 16 C -0.133 4.133 17 C -0.069 4.069 18 C -0.180 4.180 19 C -0.094 4.094 20 C -0.234 4.234 21 C 0.100 3.900 22 O -0.219 6.219 23 C -0.067 4.067 24 C 0.407 3.593 25 F -0.162 7.162 26 F -0.153 7.153 27 F -0.173 7.173 28 H 0.042 0.958 29 H 0.087 0.913 30 H 0.047 0.953 31 H 0.030 0.970 32 H 0.114 0.886 33 H 0.069 0.931 34 H 0.167 0.833 35 H 0.163 0.837 36 H 0.144 0.856 37 H 0.141 0.859 38 H 0.145 0.855 39 H 0.118 0.882 40 H 0.072 0.928 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.175 -0.505 -17.225 17.233 hybrid contribution -0.328 -0.467 0.329 0.659 sum -0.152 -0.971 -16.896 16.924 Atomic orbital electron populations 1.21561 0.97530 0.98144 1.01229 1.22118 0.95172 1.00797 1.00451 1.19529 0.97333 0.88830 0.84414 0.93442 1.20983 1.30546 1.11541 0.89463 0.91811 1.24879 0.95514 0.95159 0.98661 1.69887 1.39104 1.24138 1.20242 0.86501 0.78987 0.79879 0.82413 1.19724 1.21296 1.21187 1.60838 1.03184 1.63412 1.02826 1.21058 0.93743 0.95831 0.90982 0.89107 1.19053 0.98462 1.02662 0.93122 1.21086 0.92946 0.94942 0.97892 1.21065 1.01475 1.02447 0.92964 1.20951 0.94534 0.95144 0.98805 1.21136 0.99697 1.06322 0.96275 1.18838 0.86230 0.91586 0.93313 1.86158 1.37787 1.61311 1.36650 1.23049 0.99372 0.95937 0.88302 1.20549 0.82671 0.82855 0.73245 1.93123 1.85035 1.43389 1.94628 1.93199 1.84423 1.96415 1.41297 1.93130 1.67086 1.94170 1.62870 0.95789 0.91331 0.95300 0.97041 0.88606 0.93132 0.83305 0.83659 0.85646 0.85930 0.85486 0.88213 0.92791 0.92729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.63 9.39 37.16 0.35 -2.29 16 2 C -0.15 -3.34 5.48 -26.73 -0.15 -3.49 16 3 C 0.21 4.97 1.92 -68.87 -0.13 4.84 16 4 H 0.05 1.29 6.16 -51.93 -0.32 0.97 16 5 C -0.49 -12.91 7.35 -34.44 -0.25 -13.17 16 6 H 0.06 1.72 7.81 -52.48 -0.41 1.31 16 7 C 0.06 1.59 5.22 -17.82 -0.09 1.49 16 8 N -0.89 -25.01 11.39 55.43 0.63 -24.38 16 9 Si 0.89 21.27 29.54 -169.99 -5.02 16.25 16 10 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 11 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 12 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 13 N -0.67 -13.73 5.30 -102.17 -0.54 -14.27 16 14 C 0.10 1.82 1.88 -68.86 -0.13 1.69 16 15 H 0.09 1.80 6.73 -51.93 -0.35 1.45 16 16 C -0.13 -2.13 4.56 -104.48 -0.48 -2.60 16 17 C -0.05 -0.73 8.78 -39.61 -0.35 -1.08 16 18 C -0.16 -1.92 10.04 -39.56 -0.40 -2.32 16 19 C -0.08 -0.83 10.04 -39.61 -0.40 -1.23 16 20 C -0.22 -2.55 9.04 -39.43 -0.36 -2.90 16 21 C 0.15 2.14 6.30 -39.21 -0.25 1.89 16 22 O -0.31 -4.39 8.62 -19.41 -0.17 -4.56 16 23 C 0.03 0.27 9.81 101.05 0.99 1.26 16 24 C 0.46 9.13 2.82 37.16 0.10 9.24 16 25 F -0.18 -3.58 16.90 2.25 0.04 -3.54 16 26 F -0.17 -3.84 15.33 2.25 0.03 -3.80 16 27 F -0.19 -3.53 15.69 2.25 0.04 -3.50 16 28 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.07 1.55 7.03 -51.93 -0.37 1.19 16 30 H 0.03 0.53 6.43 -51.93 -0.33 0.20 16 31 H 0.01 0.24 7.49 -51.93 -0.39 -0.15 16 32 H 0.10 2.47 6.26 -51.93 -0.32 2.15 16 33 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 34 H 0.34 6.58 4.93 -39.30 -0.19 6.39 16 35 H 0.15 2.14 6.91 -52.49 -0.36 1.78 16 36 H 0.13 1.19 8.06 -52.48 -0.42 0.77 16 37 H 0.12 0.98 8.06 -52.48 -0.42 0.56 16 38 H 0.13 1.16 6.30 -52.49 -0.33 0.83 16 39 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.05 0.43 7.65 -51.93 -0.40 0.03 16 41 H 0.05 0.44 7.68 -51.93 -0.40 0.04 16 LS Contribution 338.80 15.07 5.11 5.11 Total: -1.00 -29.30 338.80 -6.42 -35.72 By element: Atomic # 1 Polarization: 10.64 SS G_CDS: -5.00 Total: 5.64 kcal Atomic # 6 Polarization: -7.14 SS G_CDS: -1.53 Total: -8.67 kcal Atomic # 7 Polarization: -38.74 SS G_CDS: 0.09 Total: -38.65 kcal Atomic # 8 Polarization: -4.39 SS G_CDS: -0.17 Total: -4.56 kcal Atomic # 9 Polarization: -10.95 SS G_CDS: 0.11 Total: -10.84 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -29.30 -6.42 -35.72 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255163550.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.806 kcal (2) G-P(sol) polarization free energy of solvation -29.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds