Wall clock time and date at job start Tue Mar 31 2020 13:01:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47011 * 2 1 4 4 H 1.08997 * 109.47005 * 174.00911 * 3 2 1 5 5 C 1.50699 * 109.47444 * 54.01061 * 3 2 1 6 6 H 1.08004 * 119.99531 * 240.00295 * 5 3 2 7 7 C 1.37876 * 120.00330 * 59.99635 * 5 3 2 8 8 N 1.31510 * 119.99819 * 0.02562 * 7 5 3 9 9 Si 1.86795 * 119.99866 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47762 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.47125 * 120.00294 * 9 7 5 12 12 H 1.48500 * 109.47195 * 240.00027 * 9 7 5 13 13 N 1.46900 * 109.46803 * 294.00713 * 3 2 1 14 14 C 1.46904 * 111.00003 * 274.10423 * 13 3 2 15 15 H 1.09000 * 109.47070 * 31.92299 * 14 13 3 16 16 C 1.50698 * 109.47208 * 151.92698 * 14 13 3 17 17 C 1.38164 * 120.02640 * 24.99702 * 16 14 13 18 18 C 1.38243 * 120.05295 * 180.02562 * 17 16 14 19 19 C 1.38284 * 120.11406 * 359.97438 * 18 17 16 20 20 C 1.38119 * 120.05640 * 0.02767 * 19 18 17 21 21 C 1.38711 * 120.02656 * 204.72605 * 16 14 13 22 22 O 1.35894 * 120.05609 * 0.02562 * 21 16 14 23 23 C 1.42900 * 116.99938 * 180.02562 * 22 21 16 24 24 C 1.52999 * 109.47143 * 271.92827 * 14 13 3 25 25 F 1.39907 * 109.47127 * 299.99463 * 24 14 13 26 26 F 1.39891 * 109.47775 * 59.99843 * 24 14 13 27 27 F 1.39905 * 109.47182 * 180.02562 * 24 14 13 28 28 H 1.09005 * 109.47162 * 178.74881 * 1 2 3 29 29 H 1.09000 * 109.47523 * 298.75761 * 1 2 3 30 30 H 1.08999 * 109.46850 * 58.75601 * 1 2 3 31 31 H 1.08992 * 109.47466 * 239.99305 * 2 1 3 32 32 H 1.09000 * 109.46788 * 119.99423 * 2 1 3 33 33 H 0.96998 * 119.99853 * 180.02562 * 8 7 5 34 34 H 1.00893 * 111.00062 * 38.05766 * 13 3 2 35 35 H 1.08001 * 119.97782 * 359.97438 * 17 16 14 36 36 H 1.08007 * 119.94396 * 179.97438 * 18 17 16 37 37 H 1.08008 * 119.97006 * 179.97438 * 19 18 17 38 38 H 1.07998 * 120.02670 * 179.97438 * 20 19 18 39 39 H 1.09000 * 109.47439 * 179.97438 * 23 22 21 40 40 H 1.09005 * 109.47027 * 299.99943 * 23 22 21 41 41 H 1.09001 * 109.47280 * 59.99200 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1246 1.4444 0.1073 5 6 1.4203 2.1945 1.1496 6 1 0.8136 3.0675 0.9593 7 6 1.6276 1.7679 2.4442 8 7 2.3667 0.7050 2.6759 9 14 0.8589 2.6996 3.8690 10 1 0.0788 3.8496 3.3452 11 1 -0.0431 1.7932 4.6241 12 1 1.9292 3.1966 4.7705 13 7 1.6719 2.0919 -1.2652 14 6 2.6747 1.8253 -2.3051 15 1 3.1123 0.8401 -2.1437 16 6 2.0166 1.8670 -3.6601 17 6 0.8603 2.6003 -3.8448 18 6 0.2558 2.6385 -5.0875 19 6 0.8068 1.9437 -6.1487 20 6 1.9626 1.2092 -5.9692 21 6 2.5744 1.1738 -4.7243 22 8 3.7144 0.4559 -4.5463 23 6 4.2324 -0.2322 -5.6865 24 6 3.7732 2.8882 -2.2387 25 9 3.2117 4.1528 -2.4457 26 9 4.3842 2.8496 -0.9808 27 9 4.7280 2.6347 -3.2293 28 1 -0.3634 -1.0275 -0.0224 29 1 -0.3634 0.4944 0.9009 30 1 -0.3633 0.5330 -0.8786 31 1 1.8934 -0.5139 -0.8898 32 1 1.8933 -0.5138 0.8900 33 1 2.5123 0.4047 3.5866 34 1 0.7533 1.8028 -1.5662 35 1 0.4277 3.1434 -3.0176 36 1 -0.6483 3.2119 -5.2299 37 1 0.3323 1.9749 -7.1185 38 1 2.3922 0.6665 -6.7982 39 1 5.1422 -0.7640 -5.4077 40 1 3.4912 -0.9447 -6.0486 41 1 4.4592 0.4874 -6.4732 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255163550.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:01:00 Heat of formation + Delta-G solvation = -178.294674 kcal Electronic energy + Delta-G solvation = -28645.649550 eV Core-core repulsion = 24303.308558 eV Total energy + Delta-G solvation = -4342.340992 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.134 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -50.92939 -48.46444 -48.38674 -41.29638 -38.95065 -37.98332 -35.26298 -33.27778 -31.26411 -31.10617 -29.04645 -28.05791 -27.64919 -25.29794 -24.52459 -22.99553 -22.21151 -21.26061 -19.54827 -19.41857 -18.94075 -18.16933 -18.07857 -17.23591 -16.83402 -16.60594 -16.56371 -15.80609 -15.48282 -15.33782 -15.22531 -15.22057 -14.86918 -14.73340 -14.60661 -14.56520 -14.36257 -14.23257 -14.01499 -13.78173 -13.51419 -12.97621 -12.81351 -12.80514 -12.58245 -12.43645 -12.33039 -11.98345 -11.94845 -11.88082 -11.60619 -11.42785 -10.97308 -10.41006 -9.89450 -9.28915 -9.15011 -8.04228 -6.11401 0.24875 0.48911 1.43169 1.46391 1.57140 1.92394 2.38502 2.46256 2.72689 2.93724 3.07661 3.24026 3.26299 3.63892 3.87736 4.01256 4.08660 4.19632 4.33965 4.42349 4.46106 4.52889 4.55184 4.59819 4.72419 4.73946 4.78303 5.00742 5.08853 5.23063 5.34027 5.39180 5.47710 5.58399 5.68974 5.74222 5.79111 5.87696 6.25727 6.44287 6.53099 6.62297 6.97190 7.54810 9.02371 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.016930 B = 0.004795 C = 0.004558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1653.478950 B = 5838.503987 C = 6141.155340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.138 4.138 3 C 0.213 3.787 4 H 0.012 0.988 5 C -0.495 4.495 6 H 0.055 0.945 7 C 0.015 3.985 8 N -0.920 5.920 9 Si 0.951 3.049 10 H -0.268 1.268 11 H -0.280 1.280 12 H -0.288 1.288 13 N -0.667 5.667 14 C 0.108 3.892 15 H 0.074 0.926 16 C -0.161 4.161 17 C -0.064 4.064 18 C -0.160 4.160 19 C -0.065 4.065 20 C -0.212 4.212 21 C 0.133 3.867 22 O -0.336 6.336 23 C 0.019 3.981 24 C 0.459 3.541 25 F -0.181 7.181 26 F -0.193 7.193 27 F -0.183 7.183 28 H 0.043 0.957 29 H 0.046 0.954 30 H 0.048 0.952 31 H 0.022 0.978 32 H 0.064 0.936 33 H 0.258 0.742 34 H 0.353 0.647 35 H 0.135 0.865 36 H 0.152 0.848 37 H 0.162 0.838 38 H 0.157 0.843 39 H 0.110 0.890 40 H 0.071 0.929 41 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.827 -1.004 -20.344 20.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.178 4.178 3 C 0.105 3.895 4 H 0.030 0.970 5 C -0.534 4.534 6 H 0.074 0.926 7 C -0.183 4.183 8 N -0.560 5.560 9 Si 0.778 3.222 10 H -0.192 1.192 11 H -0.206 1.206 12 H -0.215 1.215 13 N -0.301 5.301 14 C -0.004 4.004 15 H 0.092 0.908 16 C -0.163 4.163 17 C -0.083 4.083 18 C -0.177 4.177 19 C -0.083 4.083 20 C -0.231 4.231 21 C 0.087 3.913 22 O -0.250 6.250 23 C -0.075 4.075 24 C 0.403 3.597 25 F -0.163 7.163 26 F -0.174 7.174 27 F -0.164 7.164 28 H 0.062 0.938 29 H 0.065 0.935 30 H 0.067 0.933 31 H 0.041 0.959 32 H 0.083 0.917 33 H 0.068 0.932 34 H 0.177 0.823 35 H 0.152 0.848 36 H 0.169 0.831 37 H 0.179 0.821 38 H 0.174 0.826 39 H 0.128 0.872 40 H 0.089 0.911 41 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -1.363 -0.508 -19.840 19.893 hybrid contribution 0.205 -0.467 0.995 1.118 sum -1.158 -0.975 -18.845 18.905 Atomic orbital electron populations 1.21440 0.95551 0.99486 1.01027 1.21953 0.96849 0.99605 0.99386 1.19230 0.94975 0.89663 0.85607 0.97035 1.21193 1.30276 1.11353 0.90555 0.92632 1.25550 0.95990 0.95896 1.00873 1.70018 1.40156 1.25297 1.20546 0.85605 0.78138 0.78889 0.79585 1.19235 1.20621 1.21450 1.60619 1.04113 1.63049 1.02344 1.20869 0.92869 0.94290 0.92414 0.90787 1.18947 0.99837 1.05454 0.92022 1.21099 0.92911 0.95235 0.99030 1.21380 1.02035 1.02336 0.91998 1.21433 0.93675 0.93160 1.00025 1.21509 0.99667 1.06062 0.95820 1.19010 0.86640 0.91699 0.93926 1.86117 1.37952 1.61728 1.39183 1.23351 1.00200 0.96445 0.87537 1.20796 0.83058 0.83215 0.72586 1.93108 1.85049 1.43546 1.94574 1.93158 1.84896 1.96529 1.42848 1.93132 1.66849 1.94120 1.62336 0.93766 0.93528 0.93278 0.95946 0.91705 0.93238 0.82329 0.84767 0.83053 0.82078 0.82569 0.87162 0.91070 0.91266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.81 9.39 71.98 0.68 -4.14 16 2 C -0.14 -6.47 5.48 30.59 0.17 -6.30 16 3 C 0.21 10.64 1.92 44.17 0.08 10.72 16 4 H 0.01 0.67 6.16 -2.39 -0.01 0.65 16 5 C -0.49 -26.88 7.35 25.60 0.19 -26.69 16 6 H 0.06 3.05 7.81 -2.91 -0.02 3.03 16 7 C 0.02 0.83 5.22 84.66 0.44 1.28 16 8 N -0.92 -52.86 11.39 21.45 0.24 -52.62 16 9 Si 0.95 44.19 29.54 68.60 2.03 46.22 16 10 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 11 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 12 H -0.29 -13.43 7.11 99.48 0.71 -12.73 16 13 N -0.67 -28.01 5.30 -477.16 -2.53 -30.54 16 14 C 0.11 4.18 1.88 44.17 0.08 4.26 16 15 H 0.07 3.07 6.73 -2.39 -0.02 3.06 16 16 C -0.16 -5.13 4.56 -19.77 -0.09 -5.22 16 17 C -0.06 -1.79 8.78 22.25 0.20 -1.60 16 18 C -0.16 -3.29 10.04 22.28 0.22 -3.07 16 19 C -0.07 -1.14 10.04 22.25 0.22 -0.91 16 20 C -0.21 -4.27 9.04 22.37 0.20 -4.07 16 21 C 0.13 3.69 6.30 22.51 0.14 3.84 16 22 O -0.34 -9.35 8.62 -92.36 -0.80 -10.14 16 23 C 0.02 0.31 9.81 113.37 1.11 1.42 16 24 C 0.46 18.68 2.82 71.98 0.20 18.88 16 25 F -0.18 -7.33 16.90 44.97 0.76 -6.57 16 26 F -0.19 -9.03 15.33 44.97 0.69 -8.34 16 27 F -0.18 -6.88 15.69 44.97 0.71 -6.18 16 28 H 0.04 1.60 8.14 -2.38 -0.02 1.58 16 29 H 0.05 2.10 7.03 -2.39 -0.02 2.08 16 30 H 0.05 1.78 6.43 -2.39 -0.02 1.76 16 31 H 0.02 0.96 7.49 -2.39 -0.02 0.95 16 32 H 0.06 3.45 6.26 -2.39 -0.01 3.44 16 33 H 0.26 14.24 8.31 -92.71 -0.77 13.47 16 34 H 0.35 13.56 4.93 -89.70 -0.44 13.12 16 35 H 0.13 3.91 6.91 -2.91 -0.02 3.89 16 36 H 0.15 2.28 8.06 -2.91 -0.02 2.26 16 37 H 0.16 1.60 8.06 -2.91 -0.02 1.58 16 38 H 0.16 2.15 6.30 -2.91 -0.02 2.13 16 39 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16 40 H 0.07 0.92 7.65 -2.38 -0.02 0.90 16 41 H 0.07 0.93 7.68 -2.39 -0.02 0.91 16 Total: -1.00 -65.16 338.80 5.59 -59.57 By element: Atomic # 1 Polarization: 19.57 SS G_CDS: 0.63 Total: 20.20 kcal Atomic # 6 Polarization: -15.44 SS G_CDS: 3.85 Total: -11.59 kcal Atomic # 7 Polarization: -80.87 SS G_CDS: -2.28 Total: -83.16 kcal Atomic # 8 Polarization: -9.35 SS G_CDS: -0.80 Total: -10.14 kcal Atomic # 9 Polarization: -23.25 SS G_CDS: 2.16 Total: -21.09 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.22 kcal Total: -65.16 5.59 -59.57 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255163550.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.724 kcal (2) G-P(sol) polarization free energy of solvation -65.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -183.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds