Wall clock time and date at job start Tue Mar 31 2020 13:01:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53002 * 109.47080 * 2 1 4 4 H 1.08994 * 109.47321 * 304.29664 * 3 2 1 5 5 C 1.50702 * 109.47271 * 184.28977 * 3 2 1 6 6 H 1.07999 * 120.00117 * 240.00040 * 5 3 2 7 7 C 1.37879 * 119.99402 * 60.00061 * 5 3 2 8 8 N 1.31508 * 120.00518 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 119.99648 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47337 * 60.00261 * 9 7 5 11 11 H 1.48501 * 109.47142 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47381 * 300.00315 * 9 7 5 13 13 N 1.46906 * 109.46860 * 64.29389 * 3 2 1 14 14 C 1.46904 * 110.99575 * 206.22840 * 13 3 2 15 15 H 1.09004 * 109.46975 * 328.70920 * 14 13 3 16 16 C 1.50704 * 109.46655 * 208.71723 * 14 13 3 17 17 C 1.38165 * 120.02845 * 339.71884 * 16 14 13 18 18 C 1.38245 * 120.05227 * 179.76949 * 17 16 14 19 19 C 1.38286 * 120.11258 * 0.51484 * 18 17 16 20 20 C 1.38126 * 120.05844 * 359.73846 * 19 18 17 21 21 C 1.38715 * 120.02551 * 160.00025 * 16 14 13 22 22 O 1.35904 * 120.05571 * 359.97438 * 21 16 14 23 23 C 1.42896 * 116.99921 * 180.02562 * 22 21 16 24 24 C 1.52995 * 109.47196 * 88.71698 * 14 13 3 25 25 F 1.39894 * 109.47252 * 63.25668 * 24 14 13 26 26 F 1.39907 * 109.47061 * 183.25466 * 24 14 13 27 27 F 1.39902 * 109.47081 * 303.24934 * 24 14 13 28 28 H 1.08997 * 109.47676 * 304.76545 * 1 2 3 29 29 H 1.09001 * 109.47390 * 64.76078 * 1 2 3 30 30 H 1.09001 * 109.47153 * 184.75852 * 1 2 3 31 31 H 1.08994 * 109.47499 * 239.99861 * 2 1 3 32 32 H 1.09005 * 109.46961 * 119.99998 * 2 1 3 33 33 H 0.97003 * 120.00407 * 179.97438 * 8 7 5 34 34 H 1.00899 * 111.00248 * 82.27819 * 13 3 2 35 35 H 1.07995 * 119.97476 * 0.03039 * 17 16 14 36 36 H 1.08004 * 119.94466 * 180.25702 * 18 17 16 37 37 H 1.07996 * 119.97225 * 179.76896 * 19 18 17 38 38 H 1.07998 * 120.02958 * 180.02562 * 20 19 18 39 39 H 1.08999 * 109.47299 * 59.99926 * 23 22 21 40 40 H 1.09000 * 109.47421 * 180.02562 * 23 22 21 41 41 H 1.09006 * 109.47186 * 300.00253 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6151 1.9781 -0.8489 5 6 3.5432 1.4439 -0.1063 6 1 4.1394 1.8917 0.6750 7 6 4.1573 0.8734 -1.2010 8 7 3.4313 0.3286 -2.1527 9 14 6.0206 0.8757 -1.3332 10 1 6.5999 0.1465 -0.1765 11 1 6.4282 0.2071 -2.5949 12 1 6.5152 2.2760 -1.3335 13 7 1.6367 2.1044 1.2480 14 6 1.5317 3.5579 1.0628 15 1 2.2528 3.8816 0.3122 16 6 1.8198 4.2528 2.3686 17 6 1.7103 3.5602 3.5592 18 6 1.9791 4.1958 4.7571 19 6 2.3478 5.5286 4.7678 20 6 2.4536 6.2268 3.5807 21 6 2.1895 5.5897 2.3767 22 8 2.2928 6.2744 1.2073 23 6 2.6787 7.6477 1.2916 24 6 0.1177 3.9119 0.5978 25 9 -0.8014 3.5639 1.5933 26 9 0.0387 5.2866 0.3501 27 9 -0.1770 3.2091 -0.5754 28 1 -0.3634 0.5860 0.8442 29 1 -0.3634 0.4382 -0.9295 30 1 -0.3633 -1.0241 0.0853 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 3.8634 -0.0724 -2.9230 34 1 2.2734 1.8806 1.9981 35 1 1.4186 2.5205 3.5537 36 1 1.8970 3.6517 5.6864 37 1 2.5537 6.0239 5.7052 38 1 2.7420 7.2675 3.5896 39 1 3.6593 7.7214 1.7618 40 1 2.7227 8.0750 0.2898 41 1 1.9480 8.1946 1.8877 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255163554.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:01:05 Heat of formation + Delta-G solvation = -165.330206 kcal Electronic energy + Delta-G solvation = -28766.845725 eV Core-core repulsion = 24425.066915 eV Total energy + Delta-G solvation = -4341.778811 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.134 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.32117 -46.84272 -46.77996 -40.19510 -37.57182 -36.33261 -33.53619 -31.60556 -30.09371 -30.04110 -27.68586 -27.11833 -25.76643 -23.35247 -22.67775 -21.91617 -20.68516 -19.62553 -18.14040 -17.81718 -17.59882 -16.93523 -16.34309 -16.07602 -15.62060 -15.44625 -14.79685 -14.32567 -14.15687 -13.90624 -13.65072 -13.56107 -13.32076 -13.24454 -13.12339 -13.00170 -12.92015 -12.69849 -12.41771 -12.14959 -11.86419 -11.58027 -11.44386 -11.19388 -11.06333 -11.04957 -10.96297 -10.69855 -10.62338 -10.20181 -9.60612 -9.56046 -9.14430 -8.78912 -8.39298 -8.08403 -7.61437 -6.03580 -4.16557 1.33287 1.52485 3.26729 3.32225 3.34275 3.34791 3.46811 3.86775 4.35985 4.49300 4.53699 4.76746 4.87280 4.96717 5.10731 5.14501 5.20396 5.24897 5.33498 5.44909 5.49147 5.64105 5.77012 5.93957 6.13488 6.34101 6.42308 6.47869 6.55793 6.59769 6.74075 6.86640 7.07170 7.20464 7.33609 7.44876 7.52983 7.73533 7.90681 8.04269 8.18742 8.46670 8.92095 9.51040 10.97660 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.012081 B = 0.005837 C = 0.005066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2317.037060 B = 4795.924533 C = 5525.727942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.103 4.103 3 C 0.207 3.793 4 H 0.047 0.953 5 C -0.551 4.551 6 H 0.054 0.946 7 C 0.071 3.929 8 N -0.881 5.881 9 Si 0.889 3.111 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.278 1.278 13 N -0.675 5.675 14 C 0.103 3.897 15 H 0.103 0.897 16 C -0.127 4.127 17 C -0.052 4.052 18 C -0.162 4.162 19 C -0.078 4.078 20 C -0.215 4.215 21 C 0.146 3.854 22 O -0.303 6.303 23 C 0.029 3.971 24 C 0.461 3.539 25 F -0.184 7.184 26 F -0.188 7.188 27 F -0.175 7.175 28 H 0.049 0.951 29 H 0.038 0.962 30 H 0.025 0.975 31 H 0.092 0.908 32 H 0.031 0.969 33 H 0.263 0.737 34 H 0.346 0.654 35 H 0.144 0.856 36 H 0.124 0.876 37 H 0.122 0.878 38 H 0.127 0.873 39 H 0.053 0.947 40 H 0.099 0.901 41 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.237 11.217 10.360 15.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.142 4.142 3 C 0.100 3.900 4 H 0.065 0.935 5 C -0.590 4.590 6 H 0.072 0.928 7 C -0.132 4.132 8 N -0.518 5.518 9 Si 0.717 3.283 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.204 1.204 13 N -0.307 5.307 14 C -0.010 4.010 15 H 0.121 0.879 16 C -0.128 4.128 17 C -0.070 4.070 18 C -0.180 4.180 19 C -0.096 4.096 20 C -0.234 4.234 21 C 0.099 3.901 22 O -0.215 6.215 23 C -0.066 4.066 24 C 0.406 3.594 25 F -0.166 7.166 26 F -0.169 7.169 27 F -0.157 7.157 28 H 0.068 0.932 29 H 0.057 0.943 30 H 0.044 0.956 31 H 0.111 0.889 32 H 0.050 0.950 33 H 0.073 0.927 34 H 0.167 0.833 35 H 0.162 0.838 36 H 0.142 0.858 37 H 0.140 0.860 38 H 0.145 0.855 39 H 0.072 0.928 40 H 0.118 0.882 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -3.954 10.928 9.843 15.230 hybrid contribution 1.898 0.548 -0.135 1.980 sum -2.056 11.476 9.709 15.172 Atomic orbital electron populations 1.21729 0.98812 0.98500 1.00666 1.21465 0.92221 0.98638 1.01836 1.19442 0.93138 0.91761 0.85642 0.93536 1.21759 0.92292 1.38801 1.06179 0.92764 1.24894 0.97981 0.94820 0.95537 1.69865 1.35042 1.37535 1.09401 0.86709 0.85976 0.78217 0.77401 1.20253 1.21187 1.20375 1.60886 1.56025 1.02142 1.11685 1.20998 0.90952 0.93260 0.95819 0.87927 1.19068 1.06994 0.91534 0.95245 1.21025 0.94942 1.00594 0.90482 1.21037 1.03906 0.95051 0.98025 1.20927 0.97129 0.94401 0.97166 1.21132 1.09365 1.00781 0.92124 1.18860 0.94843 0.91188 0.85170 1.86193 1.83247 1.24157 1.27947 1.23037 0.99324 0.80351 1.03926 1.20649 0.89887 0.73602 0.75269 1.93108 1.69861 1.91926 1.61691 1.93142 1.96919 1.32448 1.94425 1.93173 1.94440 1.78727 1.49338 0.93216 0.94282 0.95606 0.88939 0.95013 0.92691 0.83312 0.83826 0.85770 0.86034 0.85549 0.92829 0.88249 0.92846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.93 9.85 37.15 0.37 -2.56 16 2 C -0.10 -2.43 5.45 -26.73 -0.15 -2.58 16 3 C 0.21 4.98 1.52 -68.86 -0.10 4.88 16 4 H 0.05 1.25 6.23 -51.93 -0.32 0.93 16 5 C -0.55 -14.44 8.34 -34.44 -0.29 -14.73 16 6 H 0.05 1.41 7.72 -52.49 -0.41 1.00 16 7 C 0.07 1.91 5.29 -17.82 -0.09 1.81 16 8 N -0.88 -24.53 11.30 55.43 0.63 -23.91 16 9 Si 0.89 20.87 29.54 -169.99 -5.02 15.85 16 10 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 11 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 12 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 13 N -0.67 -13.66 4.74 -102.16 -0.48 -14.14 16 14 C 0.10 1.98 1.91 -68.86 -0.13 1.85 16 15 H 0.10 2.23 7.36 -51.93 -0.38 1.85 16 16 C -0.13 -2.14 4.63 -104.47 -0.48 -2.62 16 17 C -0.05 -0.77 8.85 -39.61 -0.35 -1.12 16 18 C -0.16 -2.00 10.04 -39.56 -0.40 -2.40 16 19 C -0.08 -0.90 10.04 -39.60 -0.40 -1.30 16 20 C -0.22 -2.72 9.04 -39.43 -0.36 -3.08 16 21 C 0.15 2.26 6.32 -39.21 -0.25 2.01 16 22 O -0.30 -4.68 8.19 -19.44 -0.16 -4.83 16 23 C 0.03 0.30 9.81 101.05 0.99 1.29 16 24 C 0.46 8.97 2.82 37.15 0.10 9.08 16 25 F -0.18 -3.50 16.91 2.25 0.04 -3.46 16 26 F -0.19 -3.51 15.25 2.25 0.03 -3.47 16 27 F -0.18 -3.74 15.32 2.25 0.03 -3.71 16 28 H 0.05 1.01 7.60 -51.93 -0.39 0.62 16 29 H 0.04 0.84 8.14 -51.93 -0.42 0.41 16 30 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.09 2.44 5.97 -51.93 -0.31 2.13 16 32 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 34 H 0.35 6.71 6.41 -39.29 -0.25 6.46 16 35 H 0.14 2.07 6.64 -52.49 -0.35 1.72 16 36 H 0.12 1.22 8.06 -52.48 -0.42 0.80 16 37 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 38 H 0.13 1.26 6.30 -52.49 -0.33 0.93 16 39 H 0.05 0.48 7.66 -51.93 -0.40 0.09 16 40 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.05 0.47 7.66 -51.93 -0.40 0.08 16 LS Contribution 343.03 15.07 5.17 5.17 Total: -1.00 -28.77 343.03 -6.51 -35.27 By element: Atomic # 1 Polarization: 11.91 SS G_CDS: -5.21 Total: 6.70 kcal Atomic # 6 Polarization: -7.93 SS G_CDS: -1.53 Total: -9.47 kcal Atomic # 7 Polarization: -38.19 SS G_CDS: 0.14 Total: -38.05 kcal Atomic # 8 Polarization: -4.68 SS G_CDS: -0.16 Total: -4.83 kcal Atomic # 9 Polarization: -10.75 SS G_CDS: 0.11 Total: -10.65 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -28.77 -6.51 -35.27 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255163554.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -130.055 kcal (2) G-P(sol) polarization free energy of solvation -28.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds