Wall clock time and date at job start Tue Mar 31 2020 13:01:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53002 * 109.47080 * 2 1 4 4 H 1.08994 * 109.47321 * 304.29664 * 3 2 1 5 5 C 1.50702 * 109.47271 * 184.28977 * 3 2 1 6 6 H 1.07999 * 120.00117 * 240.00040 * 5 3 2 7 7 C 1.37879 * 119.99402 * 60.00061 * 5 3 2 8 8 N 1.31508 * 120.00518 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 119.99648 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47337 * 60.00261 * 9 7 5 11 11 H 1.48501 * 109.47142 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47381 * 300.00315 * 9 7 5 13 13 N 1.46906 * 109.46860 * 64.29389 * 3 2 1 14 14 C 1.46904 * 110.99575 * 206.22840 * 13 3 2 15 15 H 1.09004 * 109.46975 * 328.70920 * 14 13 3 16 16 C 1.50704 * 109.46655 * 208.71723 * 14 13 3 17 17 C 1.38165 * 120.02845 * 339.71884 * 16 14 13 18 18 C 1.38245 * 120.05227 * 179.76949 * 17 16 14 19 19 C 1.38286 * 120.11258 * 0.51484 * 18 17 16 20 20 C 1.38126 * 120.05844 * 359.73846 * 19 18 17 21 21 C 1.38715 * 120.02551 * 160.00025 * 16 14 13 22 22 O 1.35904 * 120.05571 * 359.97438 * 21 16 14 23 23 C 1.42896 * 116.99921 * 180.02562 * 22 21 16 24 24 C 1.52995 * 109.47196 * 88.71698 * 14 13 3 25 25 F 1.39894 * 109.47252 * 63.25668 * 24 14 13 26 26 F 1.39907 * 109.47061 * 183.25466 * 24 14 13 27 27 F 1.39902 * 109.47081 * 303.24934 * 24 14 13 28 28 H 1.08997 * 109.47676 * 304.76545 * 1 2 3 29 29 H 1.09001 * 109.47390 * 64.76078 * 1 2 3 30 30 H 1.09001 * 109.47153 * 184.75852 * 1 2 3 31 31 H 1.08994 * 109.47499 * 239.99861 * 2 1 3 32 32 H 1.09005 * 109.46961 * 119.99998 * 2 1 3 33 33 H 0.97003 * 120.00407 * 179.97438 * 8 7 5 34 34 H 1.00899 * 111.00248 * 82.27819 * 13 3 2 35 35 H 1.07995 * 119.97476 * 0.03039 * 17 16 14 36 36 H 1.08004 * 119.94466 * 180.25702 * 18 17 16 37 37 H 1.07996 * 119.97225 * 179.76896 * 19 18 17 38 38 H 1.07998 * 120.02958 * 180.02562 * 20 19 18 39 39 H 1.08999 * 109.47299 * 59.99926 * 23 22 21 40 40 H 1.09000 * 109.47421 * 180.02562 * 23 22 21 41 41 H 1.09006 * 109.47186 * 300.00253 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6151 1.9781 -0.8489 5 6 3.5432 1.4439 -0.1063 6 1 4.1394 1.8917 0.6750 7 6 4.1573 0.8734 -1.2010 8 7 3.4313 0.3286 -2.1527 9 14 6.0206 0.8757 -1.3332 10 1 6.5999 0.1465 -0.1765 11 1 6.4282 0.2071 -2.5949 12 1 6.5152 2.2760 -1.3335 13 7 1.6367 2.1044 1.2480 14 6 1.5317 3.5579 1.0628 15 1 2.2528 3.8816 0.3122 16 6 1.8198 4.2528 2.3686 17 6 1.7103 3.5602 3.5592 18 6 1.9791 4.1958 4.7571 19 6 2.3478 5.5286 4.7678 20 6 2.4536 6.2268 3.5807 21 6 2.1895 5.5897 2.3767 22 8 2.2928 6.2744 1.2073 23 6 2.6787 7.6477 1.2916 24 6 0.1177 3.9119 0.5978 25 9 -0.8014 3.5639 1.5933 26 9 0.0387 5.2866 0.3501 27 9 -0.1770 3.2091 -0.5754 28 1 -0.3634 0.5860 0.8442 29 1 -0.3634 0.4382 -0.9295 30 1 -0.3633 -1.0241 0.0853 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 3.8634 -0.0724 -2.9230 34 1 2.2734 1.8806 1.9981 35 1 1.4186 2.5205 3.5537 36 1 1.8970 3.6517 5.6864 37 1 2.5537 6.0239 5.7052 38 1 2.7420 7.2675 3.5896 39 1 3.6593 7.7214 1.7618 40 1 2.7227 8.0750 0.2898 41 1 1.9480 8.1946 1.8877 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255163554.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:01:04 Heat of formation + Delta-G solvation = -181.237506 kcal Electronic energy + Delta-G solvation = -28767.535518 eV Core-core repulsion = 24425.066915 eV Total energy + Delta-G solvation = -4342.468603 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.134 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -50.91240 -48.43763 -48.37442 -41.25851 -38.80996 -37.82805 -35.20113 -33.48903 -31.45388 -31.10217 -29.20522 -28.05839 -27.61017 -24.95377 -24.22716 -23.01569 -22.02928 -21.43222 -19.52551 -19.39839 -18.98326 -18.58488 -18.04814 -17.21635 -16.73932 -16.67093 -16.55109 -15.62469 -15.44977 -15.38861 -15.19242 -15.13506 -14.85254 -14.79230 -14.61292 -14.53695 -14.48798 -14.19499 -13.70975 -13.60452 -13.21075 -13.06801 -12.94714 -12.87679 -12.75798 -12.51649 -12.25487 -12.13232 -11.96399 -11.78154 -11.52218 -11.37471 -11.06523 -10.44633 -9.86451 -9.39618 -9.12525 -8.07803 -6.28367 0.27604 0.50502 1.39503 1.39800 1.47409 1.94428 2.39741 2.41258 2.74115 2.94258 3.11844 3.16323 3.25573 3.68198 3.90226 4.02648 4.12041 4.27740 4.40054 4.41488 4.46867 4.56727 4.61948 4.73106 4.76684 4.80272 4.92863 5.01873 5.15500 5.32881 5.40483 5.43720 5.50200 5.57494 5.62239 5.76152 5.89382 6.06261 6.07593 6.24858 6.46731 6.61237 6.91886 7.42357 8.91104 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.012081 B = 0.005837 C = 0.005066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2317.037060 B = 4795.924533 C = 5525.727942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.099 4.099 3 C 0.216 3.784 4 H 0.013 0.987 5 C -0.562 4.562 6 H 0.052 0.948 7 C 0.024 3.976 8 N -0.908 5.908 9 Si 0.949 3.051 10 H -0.269 1.269 11 H -0.284 1.284 12 H -0.277 1.277 13 N -0.662 5.662 14 C 0.113 3.887 15 H 0.070 0.930 16 C -0.160 4.160 17 C -0.064 4.064 18 C -0.160 4.160 19 C -0.068 4.068 20 C -0.213 4.213 21 C 0.128 3.872 22 O -0.335 6.335 23 C 0.019 3.981 24 C 0.462 3.538 25 F -0.180 7.180 26 F -0.183 7.183 27 F -0.191 7.191 28 H 0.054 0.946 29 H 0.025 0.975 30 H 0.048 0.952 31 H 0.064 0.936 32 H 0.035 0.965 33 H 0.263 0.737 34 H 0.352 0.648 35 H 0.140 0.860 36 H 0.153 0.847 37 H 0.161 0.839 38 H 0.155 0.845 39 H 0.068 0.932 40 H 0.109 0.891 41 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.563 12.428 12.937 18.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.137 4.137 3 C 0.108 3.892 4 H 0.031 0.969 5 C -0.601 4.601 6 H 0.070 0.930 7 C -0.177 4.177 8 N -0.547 5.547 9 Si 0.775 3.225 10 H -0.194 1.194 11 H -0.209 1.209 12 H -0.203 1.203 13 N -0.295 5.295 14 C 0.000 4.000 15 H 0.088 0.912 16 C -0.161 4.161 17 C -0.083 4.083 18 C -0.178 4.178 19 C -0.086 4.086 20 C -0.232 4.232 21 C 0.082 3.918 22 O -0.249 6.249 23 C -0.075 4.075 24 C 0.407 3.593 25 F -0.161 7.161 26 F -0.164 7.164 27 F -0.172 7.172 28 H 0.073 0.927 29 H 0.044 0.956 30 H 0.067 0.933 31 H 0.082 0.918 32 H 0.054 0.946 33 H 0.072 0.928 34 H 0.173 0.827 35 H 0.157 0.843 36 H 0.171 0.829 37 H 0.178 0.822 38 H 0.172 0.828 39 H 0.086 0.914 40 H 0.127 0.873 41 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -3.283 12.153 12.439 17.697 hybrid contribution 1.666 0.276 -0.883 1.906 sum -1.617 12.429 11.556 17.048 Atomic orbital electron populations 1.21582 0.96755 0.99912 1.00166 1.21327 0.94007 0.97912 1.00501 1.19166 0.91964 0.91981 0.86098 0.96894 1.22057 0.93549 1.38343 1.06125 0.92972 1.25618 1.02050 0.94673 0.95348 1.70000 1.36556 1.38289 1.09818 0.85759 0.81115 0.78114 0.77524 1.19440 1.20931 1.20266 1.60740 1.55641 1.03027 1.10088 1.20760 0.89830 0.92460 0.96907 0.91247 1.19021 1.10124 0.92671 0.94273 1.21103 0.95655 1.00577 0.90923 1.21387 1.02652 0.95710 0.98008 1.21421 0.94847 0.94004 0.98318 1.21495 1.08268 1.02126 0.91290 1.19079 0.95436 0.90982 0.86292 1.86148 1.83619 1.26376 1.28727 1.23329 1.00547 0.78368 1.05244 1.20701 0.90181 0.73679 0.74786 1.93105 1.69688 1.91926 1.61392 1.93140 1.96916 1.31996 1.94382 1.93144 1.94590 1.79148 1.50337 0.92683 0.95552 0.93336 0.91795 0.94647 0.92799 0.82693 0.84252 0.82908 0.82156 0.82768 0.91355 0.87297 0.91117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.33 9.85 71.98 0.71 -4.62 16 2 C -0.10 -4.76 5.45 30.59 0.17 -4.59 16 3 C 0.22 10.75 1.52 44.17 0.07 10.82 16 4 H 0.01 0.74 6.23 -2.39 -0.01 0.73 16 5 C -0.56 -30.16 8.34 25.60 0.21 -29.95 16 6 H 0.05 2.76 7.72 -2.91 -0.02 2.73 16 7 C 0.02 1.30 5.29 84.66 0.45 1.75 16 8 N -0.91 -51.97 11.30 21.45 0.24 -51.73 16 9 Si 0.95 43.26 29.54 68.60 2.03 45.29 16 10 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 11 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 12 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 13 N -0.66 -27.49 4.74 -477.13 -2.26 -29.75 16 14 C 0.11 4.53 1.91 44.17 0.08 4.62 16 15 H 0.07 3.21 7.36 -2.38 -0.02 3.19 16 16 C -0.16 -5.35 4.63 -19.77 -0.09 -5.44 16 17 C -0.06 -1.83 8.85 22.25 0.20 -1.63 16 18 C -0.16 -3.45 10.04 22.28 0.22 -3.22 16 19 C -0.07 -1.30 10.04 22.25 0.22 -1.07 16 20 C -0.21 -4.74 9.04 22.37 0.20 -4.54 16 21 C 0.13 3.86 6.32 22.51 0.14 4.00 16 22 O -0.34 -10.29 8.19 -92.47 -0.76 -11.05 16 23 C 0.02 0.37 9.81 113.37 1.11 1.48 16 24 C 0.46 18.46 2.82 71.98 0.20 18.67 16 25 F -0.18 -6.85 16.91 44.97 0.76 -6.09 16 26 F -0.18 -6.98 15.25 44.97 0.69 -6.30 16 27 F -0.19 -8.49 15.32 44.97 0.69 -7.80 16 28 H 0.05 2.23 7.60 -2.39 -0.02 2.21 16 29 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 31 H 0.06 3.47 5.97 -2.39 -0.01 3.46 16 32 H 0.03 1.63 8.14 -2.38 -0.02 1.61 16 33 H 0.26 14.38 8.31 -92.71 -0.77 13.61 16 34 H 0.35 13.87 6.41 -89.69 -0.58 13.30 16 35 H 0.14 3.94 6.64 -2.91 -0.02 3.92 16 36 H 0.15 2.38 8.06 -2.91 -0.02 2.35 16 37 H 0.16 1.83 8.06 -2.91 -0.02 1.80 16 38 H 0.15 2.46 6.30 -2.91 -0.02 2.45 16 39 H 0.07 1.09 7.66 -2.39 -0.02 1.07 16 40 H 0.11 1.82 8.14 -2.39 -0.02 1.80 16 41 H 0.07 1.09 7.66 -2.38 -0.02 1.07 16 Total: -1.00 -63.74 343.03 5.78 -57.97 By element: Atomic # 1 Polarization: 22.72 SS G_CDS: 0.49 Total: 23.21 kcal Atomic # 6 Polarization: -17.64 SS G_CDS: 3.90 Total: -13.74 kcal Atomic # 7 Polarization: -79.47 SS G_CDS: -2.02 Total: -81.48 kcal Atomic # 8 Polarization: -10.29 SS G_CDS: -0.76 Total: -11.05 kcal Atomic # 9 Polarization: -22.32 SS G_CDS: 2.13 Total: -20.19 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.29 kcal Total: -63.74 5.78 -57.97 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255163554.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.270 kcal (2) G-P(sol) polarization free energy of solvation -63.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -187.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds