Wall clock time and date at job start Tue Mar 31 2020 12:15:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50702 * 120.00515 * 2 1 4 4 C 1.50702 * 119.99775 * 180.02562 * 2 1 3 5 5 H 1.09000 * 110.33151 * 131.12021 * 4 2 1 6 6 O 1.44422 * 110.37480 * 8.74863 * 4 2 1 7 7 C 1.44424 * 105.28050 * 200.65912 * 6 4 2 8 8 C 1.54489 * 104.80041 * 40.50977 * 7 6 4 9 9 C 1.54484 * 110.37323 * 253.36750 * 4 2 1 10 10 H 1.08997 * 110.51319 * 261.59355 * 9 4 2 11 11 C 1.50705 * 110.50749 * 24.16261 * 9 4 2 12 12 O 1.21295 * 119.99866 * 84.54862 * 11 9 4 13 13 N 1.34777 * 120.00169 * 264.54175 * 11 9 4 14 14 C 1.39989 * 119.99776 * 185.68390 * 13 11 9 15 15 C 1.38917 * 120.00548 * 34.72461 * 14 13 11 16 16 C 1.38004 * 120.00311 * 180.29873 * 15 14 13 17 17 C 1.38918 * 119.99524 * 359.45235 * 16 15 14 18 18 O 1.35778 * 119.99375 * 180.27367 * 17 16 15 19 19 C 1.34808 * 117.00260 * 354.48894 * 18 17 16 20 20 H 1.07997 * 120.00058 * 5.04984 * 19 18 17 21 21 C 1.38632 * 119.99875 * 185.05414 * 19 18 17 22 22 N 1.31567 * 120.00226 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 119.99776 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.47480 * 0.02562 * 23 21 19 25 25 H 1.48502 * 109.46996 * 119.99844 * 23 21 19 26 26 H 1.48503 * 109.47200 * 239.99808 * 23 21 19 27 27 C 1.38904 * 120.00214 * 0.30034 * 17 16 15 28 28 C 1.38001 * 120.00405 * 359.97172 * 27 17 16 29 29 H 1.08004 * 119.99575 * 359.97438 * 1 2 3 30 30 H 1.08001 * 120.00107 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.47098 * 184.91825 * 3 2 1 32 32 H 1.09001 * 109.46909 * 304.91863 * 3 2 1 33 33 H 1.09003 * 109.46939 * 64.91827 * 3 2 1 34 34 H 1.08995 * 110.37729 * 159.33688 * 7 6 4 35 35 H 1.08997 * 110.36926 * 281.57383 * 7 6 4 36 36 H 1.08998 * 110.50893 * 217.37779 * 8 7 6 37 37 H 1.08996 * 110.50966 * 94.66812 * 8 7 6 38 38 H 0.96993 * 119.99476 * 5.68596 * 13 11 9 39 39 H 1.08007 * 120.00138 * 0.02562 * 15 14 13 40 40 H 1.07999 * 120.00539 * 179.72768 * 16 15 14 41 41 H 0.97000 * 120.00230 * 179.97438 * 22 21 19 42 42 H 1.08003 * 119.99883 * 180.02562 * 27 17 16 43 43 H 1.08002 * 120.00093 * 180.02562 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 2.0634 -1.3051 -0.0006 5 1 2.8349 -1.2967 -0.7705 6 8 1.1560 -2.4095 -0.2070 7 6 1.8515 -3.5723 0.2930 8 6 2.5487 -3.0900 1.5846 9 6 2.6913 -1.5643 1.3869 10 1 3.7416 -1.2730 1.3913 11 6 1.9340 -0.8202 2.4564 12 8 0.9391 -1.3104 2.9476 13 7 2.3622 0.3899 2.8673 14 6 1.7306 1.0283 3.9413 15 6 1.2321 0.2786 4.9992 16 6 0.6040 0.9074 6.0550 17 6 0.4805 2.2911 6.0652 18 8 -0.1324 2.9101 7.1066 19 6 -0.6989 2.1203 8.0408 20 1 -0.5825 1.0481 7.9840 21 6 -1.4309 2.6844 9.0741 22 7 -1.5724 3.9906 9.1435 23 14 -2.2164 1.5898 10.3681 24 1 -1.9104 0.1684 10.0662 25 1 -1.6753 1.9387 11.7063 26 1 -3.6876 1.7922 10.3609 27 6 0.9836 3.0411 5.0099 28 6 1.6067 2.4119 3.9514 29 1 -0.5400 0.9354 0.0004 30 1 -0.5400 -0.9353 -0.0004 31 1 3.1319 1.1077 -0.0881 32 1 1.7359 1.9138 -0.8427 33 1 1.8680 1.8375 0.9308 34 1 1.1438 -4.3698 0.5191 35 1 2.5889 -3.9146 -0.4330 36 1 3.5291 -3.5553 1.6859 37 1 1.9304 -3.3061 2.4558 38 1 3.1078 0.8184 2.4188 39 1 1.3320 -0.7968 4.9934 40 1 0.2125 0.3243 6.8754 41 1 -2.0848 4.3852 9.8664 42 1 0.8880 4.1169 5.0181 43 1 1.9982 2.9952 3.1310 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001262167116.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:16 Heat of formation + Delta-G solvation = -54.457571 kcal Electronic energy + Delta-G solvation = -26582.244124 eV Core-core repulsion = 22787.129852 eV Total energy + Delta-G solvation = -3795.114272 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.93868 -39.29171 -38.29355 -36.42428 -35.27656 -33.83635 -32.49867 -32.11354 -30.21197 -29.17817 -27.82552 -27.25980 -25.33416 -24.11320 -22.79268 -22.14361 -21.03867 -20.03732 -18.78951 -18.04500 -17.52622 -17.20289 -16.58117 -16.19800 -15.93547 -15.47361 -14.97254 -14.50531 -14.22368 -14.07456 -13.82185 -13.66865 -13.47437 -13.32269 -13.16532 -12.87155 -12.64975 -12.50851 -12.15243 -11.84125 -11.74984 -11.55755 -11.51839 -11.46470 -11.34863 -11.05493 -10.97947 -10.72775 -10.41417 -10.13737 -9.66071 -9.56438 -9.21547 -9.05745 -8.68855 -8.20645 -6.91334 -6.43482 -4.00993 2.07557 2.14360 2.20876 2.84456 3.14588 3.16468 3.21860 3.28262 3.59367 3.99005 4.15928 4.49016 4.55307 4.64482 4.76291 4.85488 4.95817 5.03805 5.07911 5.10252 5.24428 5.27011 5.34368 5.44501 5.50354 5.55066 5.66208 5.72889 5.82823 5.85734 5.99673 6.14824 6.18979 6.34216 6.40427 6.57442 6.73474 6.84543 6.87095 7.00999 7.11580 7.30768 7.44484 7.70784 7.79715 8.01764 8.42448 9.02576 9.71994 10.74584 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.021501 B = 0.003030 C = 0.002835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.969157 B = 9239.929613 C = 9874.970863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.160 4.160 3 C -0.117 4.117 4 C 0.132 3.868 5 H 0.084 0.916 6 O -0.360 6.360 7 C 0.049 3.951 8 C -0.143 4.143 9 C -0.137 4.137 10 H 0.102 0.898 11 C 0.522 3.478 12 O -0.515 6.515 13 N -0.660 5.660 14 C 0.041 3.959 15 C -0.064 4.064 16 C -0.218 4.218 17 C 0.146 3.854 18 O -0.178 6.178 19 C -0.390 4.390 20 H 0.093 0.907 21 C 0.039 3.961 22 N -0.863 5.863 23 Si 0.940 3.060 24 H -0.266 1.266 25 H -0.276 1.276 26 H -0.276 1.276 27 C -0.177 4.177 28 C -0.094 4.094 29 H 0.098 0.902 30 H 0.109 0.891 31 H 0.059 0.941 32 H 0.068 0.932 33 H 0.074 0.926 34 H 0.095 0.905 35 H 0.060 0.940 36 H 0.082 0.918 37 H 0.095 0.905 38 H 0.399 0.601 39 H 0.117 0.883 40 H 0.130 0.870 41 H 0.269 0.731 42 H 0.121 0.879 43 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.434 -10.141 -18.248 23.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.160 4.160 3 C -0.174 4.174 4 C 0.074 3.926 5 H 0.102 0.898 6 O -0.279 6.279 7 C -0.028 4.028 8 C -0.181 4.181 9 C -0.159 4.159 10 H 0.120 0.880 11 C 0.309 3.691 12 O -0.390 6.390 13 N -0.305 5.305 14 C -0.051 4.051 15 C -0.084 4.084 16 C -0.238 4.238 17 C 0.092 3.908 18 O -0.081 6.081 19 C -0.466 4.466 20 H 0.110 0.890 21 C -0.165 4.165 22 N -0.498 5.498 23 Si 0.765 3.235 24 H -0.191 1.191 25 H -0.202 1.202 26 H -0.201 1.201 27 C -0.197 4.197 28 C -0.114 4.114 29 H 0.116 0.884 30 H 0.127 0.873 31 H 0.078 0.922 32 H 0.087 0.913 33 H 0.093 0.907 34 H 0.113 0.887 35 H 0.078 0.922 36 H 0.101 0.899 37 H 0.113 0.887 38 H 0.233 0.767 39 H 0.135 0.865 40 H 0.147 0.853 41 H 0.079 0.921 42 H 0.139 0.861 43 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 10.366 -10.115 -17.770 22.925 hybrid contribution 0.215 -0.375 0.513 0.671 sum 10.581 -10.491 -17.257 22.799 Atomic orbital electron populations 1.23749 0.95461 1.02438 0.96290 1.21403 0.95879 0.93688 1.05015 1.20856 0.99358 0.94190 1.02955 1.21657 0.91001 0.86581 0.93383 0.89848 1.89162 1.39570 1.16153 1.82974 1.23385 0.96334 0.89489 0.93616 1.22968 1.02186 0.92195 1.00729 1.22737 1.00838 0.97063 0.95293 0.87969 1.20053 0.84909 0.81571 0.82591 1.90721 1.24672 1.67212 1.56358 1.43305 1.34827 1.19341 1.33012 1.17202 1.06991 0.91245 0.89674 1.20653 0.97149 0.99095 0.91469 1.21082 1.07224 0.94509 1.00978 1.19387 0.92139 0.90941 0.88329 1.83972 1.61178 1.34811 1.28131 1.21380 1.31128 0.90740 1.03364 0.89003 1.25278 0.96655 0.96468 0.98118 1.70050 1.38293 1.09617 1.31862 0.85655 0.78880 0.79384 0.79584 1.19054 1.20161 1.20117 1.19992 1.06133 0.99449 0.94108 1.20340 1.00714 0.92245 0.98147 0.88365 0.87317 0.92179 0.91324 0.90720 0.88717 0.92164 0.89943 0.88683 0.76655 0.86523 0.85260 0.92097 0.86115 0.86879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.85 13.66 29.02 0.40 -1.45 16 2 C -0.16 -1.78 3.74 -101.06 -0.38 -2.16 16 3 C -0.12 -1.01 8.93 36.01 0.32 -0.69 16 4 C 0.13 1.33 3.46 -27.10 -0.09 1.24 16 5 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 6 O -0.36 -4.32 9.84 -35.23 -0.35 -4.67 16 7 C 0.05 0.43 7.63 37.94 0.29 0.72 16 8 C -0.14 -1.32 6.60 -25.16 -0.17 -1.49 16 9 C -0.14 -1.36 3.41 -90.20 -0.31 -1.67 16 10 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 11 C 0.52 7.35 4.98 -10.98 -0.05 7.30 16 12 O -0.51 -9.53 13.59 5.54 0.08 -9.46 16 13 N -0.66 -8.80 4.01 -9.82 -0.04 -8.84 16 14 C 0.04 0.72 6.25 -83.63 -0.52 0.20 16 15 C -0.06 -1.28 8.64 -39.42 -0.34 -1.62 16 16 C -0.22 -4.95 9.16 -39.42 -0.36 -5.31 16 17 C 0.15 3.55 6.65 -39.08 -0.26 3.29 16 18 O -0.18 -5.09 9.75 0.02 0.00 -5.09 16 19 C -0.39 -11.04 9.48 30.88 0.29 -10.75 16 20 H 0.09 2.44 5.20 -52.49 -0.27 2.17 16 21 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 22 N -0.86 -25.47 13.67 55.48 0.76 -24.71 16 23 Si 0.94 20.87 29.55 -169.99 -5.02 15.85 16 24 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 25 H -0.28 -5.97 7.11 56.52 0.40 -5.56 16 26 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 27 C -0.18 -3.67 9.98 -39.42 -0.39 -4.07 16 28 C -0.09 -1.62 9.96 -39.42 -0.39 -2.01 16 29 H 0.10 1.20 8.05 -52.48 -0.42 0.78 16 30 H 0.11 1.56 6.93 -52.49 -0.36 1.19 16 31 H 0.06 0.38 8.01 -51.93 -0.42 -0.04 16 32 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.07 0.73 6.99 -51.93 -0.36 0.36 16 34 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 36 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.09 1.12 6.93 -51.93 -0.36 0.76 16 38 H 0.40 3.89 7.89 -40.82 -0.32 3.57 16 39 H 0.12 2.32 6.53 -52.48 -0.34 1.97 16 40 H 0.13 2.97 5.63 -52.49 -0.30 2.68 16 41 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 42 H 0.12 2.38 8.06 -52.48 -0.42 1.96 16 43 H 0.11 1.52 8.06 -52.49 -0.42 1.10 16 LS Contribution 355.21 15.07 5.35 5.35 Total: -1.00 -34.07 355.21 -6.96 -41.03 By element: Atomic # 1 Polarization: 13.69 SS G_CDS: -5.67 Total: 8.02 kcal Atomic # 6 Polarization: -15.42 SS G_CDS: -2.07 Total: -17.49 kcal Atomic # 7 Polarization: -34.26 SS G_CDS: 0.72 Total: -33.54 kcal Atomic # 8 Polarization: -18.95 SS G_CDS: -0.27 Total: -19.22 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -34.07 -6.96 -41.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262167116.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.424 kcal (2) G-P(sol) polarization free energy of solvation -34.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds