Wall clock time and date at job start Tue Mar 31 2020 12:15:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50702 * 120.00515 * 2 1 4 4 C 1.50702 * 119.99775 * 180.02562 * 2 1 3 5 5 H 1.09000 * 110.33151 * 131.12021 * 4 2 1 6 6 O 1.44422 * 110.37480 * 8.74863 * 4 2 1 7 7 C 1.44424 * 105.28050 * 200.65912 * 6 4 2 8 8 C 1.54489 * 104.80041 * 40.50977 * 7 6 4 9 9 C 1.54484 * 110.37323 * 253.36750 * 4 2 1 10 10 H 1.08997 * 110.51319 * 261.59355 * 9 4 2 11 11 C 1.50705 * 110.50749 * 24.16261 * 9 4 2 12 12 O 1.21295 * 119.99866 * 84.54862 * 11 9 4 13 13 N 1.34777 * 120.00169 * 264.54175 * 11 9 4 14 14 C 1.39989 * 119.99776 * 185.68390 * 13 11 9 15 15 C 1.38917 * 120.00548 * 34.72461 * 14 13 11 16 16 C 1.38004 * 120.00311 * 180.29873 * 15 14 13 17 17 C 1.38918 * 119.99524 * 359.45235 * 16 15 14 18 18 O 1.35778 * 119.99375 * 180.27367 * 17 16 15 19 19 C 1.34808 * 117.00260 * 354.48894 * 18 17 16 20 20 H 1.07997 * 120.00058 * 5.04984 * 19 18 17 21 21 C 1.38632 * 119.99875 * 185.05414 * 19 18 17 22 22 N 1.31567 * 120.00226 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 119.99776 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.47480 * 0.02562 * 23 21 19 25 25 H 1.48502 * 109.46996 * 119.99844 * 23 21 19 26 26 H 1.48503 * 109.47200 * 239.99808 * 23 21 19 27 27 C 1.38904 * 120.00214 * 0.30034 * 17 16 15 28 28 C 1.38001 * 120.00405 * 359.97172 * 27 17 16 29 29 H 1.08004 * 119.99575 * 359.97438 * 1 2 3 30 30 H 1.08001 * 120.00107 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.47098 * 184.91825 * 3 2 1 32 32 H 1.09001 * 109.46909 * 304.91863 * 3 2 1 33 33 H 1.09003 * 109.46939 * 64.91827 * 3 2 1 34 34 H 1.08995 * 110.37729 * 159.33688 * 7 6 4 35 35 H 1.08997 * 110.36926 * 281.57383 * 7 6 4 36 36 H 1.08998 * 110.50893 * 217.37779 * 8 7 6 37 37 H 1.08996 * 110.50966 * 94.66812 * 8 7 6 38 38 H 0.96993 * 119.99476 * 5.68596 * 13 11 9 39 39 H 1.08007 * 120.00138 * 0.02562 * 15 14 13 40 40 H 1.07999 * 120.00539 * 179.72768 * 16 15 14 41 41 H 0.97000 * 120.00230 * 179.97438 * 22 21 19 42 42 H 1.08003 * 119.99883 * 180.02562 * 27 17 16 43 43 H 1.08002 * 120.00093 * 180.02562 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 2.0634 -1.3051 -0.0006 5 1 2.8349 -1.2967 -0.7705 6 8 1.1560 -2.4095 -0.2070 7 6 1.8515 -3.5723 0.2930 8 6 2.5487 -3.0900 1.5846 9 6 2.6913 -1.5643 1.3869 10 1 3.7416 -1.2730 1.3913 11 6 1.9340 -0.8202 2.4564 12 8 0.9391 -1.3104 2.9476 13 7 2.3622 0.3899 2.8673 14 6 1.7306 1.0283 3.9413 15 6 1.2321 0.2786 4.9992 16 6 0.6040 0.9074 6.0550 17 6 0.4805 2.2911 6.0652 18 8 -0.1324 2.9101 7.1066 19 6 -0.6989 2.1203 8.0408 20 1 -0.5825 1.0481 7.9840 21 6 -1.4309 2.6844 9.0741 22 7 -1.5724 3.9906 9.1435 23 14 -2.2164 1.5898 10.3681 24 1 -1.9104 0.1684 10.0662 25 1 -1.6753 1.9387 11.7063 26 1 -3.6876 1.7922 10.3609 27 6 0.9836 3.0411 5.0099 28 6 1.6067 2.4119 3.9514 29 1 -0.5400 0.9354 0.0004 30 1 -0.5400 -0.9353 -0.0004 31 1 3.1319 1.1077 -0.0881 32 1 1.7359 1.9138 -0.8427 33 1 1.8680 1.8375 0.9308 34 1 1.1438 -4.3698 0.5191 35 1 2.5889 -3.9146 -0.4330 36 1 3.5291 -3.5553 1.6859 37 1 1.9304 -3.3061 2.4558 38 1 3.1078 0.8184 2.4188 39 1 1.3320 -0.7968 4.9934 40 1 0.2125 0.3243 6.8754 41 1 -2.0848 4.3852 9.8664 42 1 0.8880 4.1169 5.0181 43 1 1.9982 2.9952 3.1310 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001262167116.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:15 Heat of formation + Delta-G solvation = -77.627790 kcal Electronic energy + Delta-G solvation = -26583.248860 eV Core-core repulsion = 22787.129852 eV Total energy + Delta-G solvation = -3796.119008 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.98957 -40.76772 -39.65612 -38.03671 -36.15301 -35.23438 -34.18084 -33.28064 -31.87574 -30.13866 -29.17122 -28.06969 -27.30604 -25.11709 -24.03377 -23.52021 -22.38002 -21.17764 -20.03553 -19.60501 -19.06584 -18.23432 -18.04263 -17.24481 -16.84115 -16.46568 -16.29703 -16.23692 -15.58870 -15.49284 -15.43421 -15.02350 -14.64617 -14.60421 -14.20904 -14.13459 -13.97769 -13.60876 -13.39655 -13.21931 -13.02955 -12.85431 -12.71981 -12.60968 -12.45635 -12.29313 -12.13235 -12.12318 -11.80626 -11.34641 -11.15249 -10.87931 -10.69704 -10.51146 -9.94903 -9.84417 -8.59543 -8.48286 -6.14961 0.50966 0.54647 1.22807 1.33420 1.40071 1.51259 1.66287 2.12147 2.17467 2.80760 2.89275 3.14375 3.36677 3.51056 3.67000 3.80367 4.00732 4.07167 4.10346 4.19017 4.24957 4.29679 4.37411 4.46567 4.57375 4.63889 4.69911 4.78500 4.83959 4.85936 4.90131 5.03349 5.06947 5.10784 5.15626 5.18279 5.34335 5.44330 5.59381 5.60659 5.69389 5.72311 6.01207 6.06279 6.17086 6.57823 6.96534 7.29625 7.76270 8.74633 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.021501 B = 0.003030 C = 0.002835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.969157 B = 9239.929613 C = 9874.970863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.146 4.146 3 C -0.119 4.119 4 C 0.126 3.874 5 H 0.124 0.876 6 O -0.394 6.394 7 C 0.044 3.956 8 C -0.143 4.143 9 C -0.129 4.129 10 H 0.151 0.849 11 C 0.519 3.481 12 O -0.564 6.564 13 N -0.646 5.646 14 C 0.071 3.929 15 C -0.076 4.076 16 C -0.228 4.228 17 C 0.105 3.895 18 O -0.228 6.228 19 C -0.413 4.413 20 H 0.095 0.905 21 C -0.020 4.020 22 N -0.917 5.917 23 Si 1.015 2.985 24 H -0.257 1.257 25 H -0.264 1.264 26 H -0.268 1.268 27 C -0.179 4.179 28 C -0.078 4.078 29 H 0.095 0.905 30 H 0.083 0.917 31 H 0.095 0.905 32 H 0.076 0.924 33 H 0.067 0.933 34 H 0.088 0.912 35 H 0.093 0.907 36 H 0.118 0.882 37 H 0.061 0.939 38 H 0.424 0.576 39 H 0.118 0.882 40 H 0.114 0.886 41 H 0.273 0.727 42 H 0.128 0.872 43 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.772 -11.272 -21.003 28.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.146 4.146 3 C -0.176 4.176 4 C 0.068 3.932 5 H 0.141 0.859 6 O -0.313 6.313 7 C -0.032 4.032 8 C -0.180 4.180 9 C -0.151 4.151 10 H 0.169 0.831 11 C 0.308 3.692 12 O -0.441 6.441 13 N -0.294 5.294 14 C -0.022 4.022 15 C -0.096 4.096 16 C -0.248 4.248 17 C 0.055 3.945 18 O -0.135 6.135 19 C -0.489 4.489 20 H 0.113 0.887 21 C -0.218 4.218 22 N -0.556 5.556 23 Si 0.835 3.165 24 H -0.181 1.181 25 H -0.189 1.189 26 H -0.193 1.193 27 C -0.198 4.198 28 C -0.098 4.098 29 H 0.114 0.886 30 H 0.101 0.899 31 H 0.114 0.886 32 H 0.095 0.905 33 H 0.085 0.915 34 H 0.106 0.894 35 H 0.111 0.889 36 H 0.137 0.863 37 H 0.079 0.921 38 H 0.263 0.737 39 H 0.135 0.865 40 H 0.131 0.869 41 H 0.082 0.918 42 H 0.146 0.854 43 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 13.771 -11.266 -20.599 27.219 hybrid contribution -0.642 -0.157 1.015 1.212 sum 13.129 -11.423 -19.584 26.199 Atomic orbital electron populations 1.23650 0.96742 1.01245 1.00298 1.21890 0.95432 0.95754 1.01535 1.20954 1.01208 0.92497 1.02912 1.21986 0.91342 0.85434 0.94395 0.85883 1.89157 1.41287 1.17578 1.83315 1.23578 0.96798 0.88571 0.94240 1.23003 1.03462 0.92115 0.99468 1.22860 1.02535 0.96637 0.93045 0.83122 1.20965 0.84366 0.81149 0.82729 1.90727 1.27050 1.68196 1.58127 1.43254 1.35160 1.19258 1.31696 1.17331 1.03982 0.91518 0.89391 1.20727 0.97726 0.99367 0.91827 1.21063 1.08018 0.94121 1.01613 1.19915 0.93543 0.92017 0.89034 1.83932 1.63743 1.35898 1.29883 1.21784 1.31863 0.91174 1.04127 0.88718 1.26506 0.96934 0.98089 1.00237 1.70174 1.40294 1.11695 1.33413 0.84579 0.77900 0.77523 0.76514 1.18070 1.18883 1.19258 1.20338 1.05611 0.99984 0.93894 1.20783 0.98700 0.92323 0.98004 0.88628 0.89857 0.88590 0.90487 0.91456 0.89366 0.88862 0.86339 0.92057 0.73691 0.86456 0.86859 0.91766 0.85396 0.81563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.68 13.66 67.78 0.93 -3.76 16 2 C -0.15 -2.81 3.74 -16.48 -0.06 -2.87 16 3 C -0.12 -1.47 8.93 71.24 0.64 -0.83 16 4 C 0.13 2.02 3.46 30.35 0.11 2.12 16 5 H 0.12 1.09 8.14 -2.39 -0.02 1.07 16 6 O -0.39 -8.68 9.84 -148.98 -1.47 -10.15 16 7 C 0.04 0.67 7.63 72.49 0.55 1.22 16 8 C -0.14 -2.16 6.60 31.61 0.21 -1.95 16 9 C -0.13 -1.95 3.41 -10.52 -0.04 -1.99 16 10 H 0.15 0.88 8.14 -2.39 -0.02 0.86 16 11 C 0.52 13.09 4.98 87.66 0.44 13.53 16 12 O -0.56 -20.57 13.59 -3.08 -0.04 -20.61 16 13 N -0.65 -14.57 4.01 -303.37 -1.22 -15.79 16 14 C 0.07 2.32 6.25 38.16 0.24 2.56 16 15 C -0.08 -3.07 8.64 22.38 0.19 -2.88 16 16 C -0.23 -10.83 9.16 22.38 0.20 -10.63 16 17 C 0.11 5.36 6.65 22.59 0.15 5.51 16 18 O -0.23 -13.93 9.75 -22.83 -0.22 -14.15 16 19 C -0.41 -24.86 9.48 67.91 0.64 -24.21 16 20 H 0.10 5.38 5.20 -2.91 -0.02 5.36 16 21 C -0.02 -1.16 5.49 84.83 0.47 -0.70 16 22 N -0.92 -56.91 13.67 21.61 0.30 -56.62 16 23 Si 1.02 44.36 29.55 68.60 2.03 46.38 16 24 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 25 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 26 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 27 C -0.18 -7.35 9.98 22.37 0.22 -7.13 16 28 C -0.08 -2.45 9.96 22.38 0.22 -2.23 16 29 H 0.10 2.38 8.05 -2.91 -0.02 2.35 16 30 H 0.08 2.52 6.93 -2.91 -0.02 2.50 16 31 H 0.10 0.52 8.01 -2.39 -0.02 0.50 16 32 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.07 0.96 6.99 -2.39 -0.02 0.95 16 34 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 35 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 36 H 0.12 0.94 8.14 -2.39 -0.02 0.92 16 37 H 0.06 1.38 6.93 -2.39 -0.02 1.36 16 38 H 0.42 5.63 7.89 -92.71 -0.73 4.89 16 39 H 0.12 4.70 6.53 -2.91 -0.02 4.69 16 40 H 0.11 5.60 5.63 -2.91 -0.02 5.59 16 41 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 42 H 0.13 5.02 8.06 -2.91 -0.02 5.00 16 43 H 0.17 3.50 8.06 -2.91 -0.02 3.47 16 Total: -1.00 -83.39 355.21 4.79 -78.60 By element: Atomic # 1 Polarization: 26.26 SS G_CDS: 0.31 Total: 26.57 kcal Atomic # 6 Polarization: -39.34 SS G_CDS: 5.11 Total: -34.23 kcal Atomic # 7 Polarization: -71.49 SS G_CDS: -0.92 Total: -72.41 kcal Atomic # 8 Polarization: -43.18 SS G_CDS: -1.73 Total: -44.91 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.38 kcal Total: -83.39 4.79 -78.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262167116.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.972 kcal (2) G-P(sol) polarization free energy of solvation -83.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds