Wall clock time and date at job start Tue Mar 31 2020 11:15:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50704 * 109.47200 * 2 1 4 4 C 1.31884 * 124.30172 * 89.99822 * 3 2 1 5 5 C 1.45079 * 114.81197 * 179.97438 * 4 3 2 6 6 C 1.39756 * 111.99532 * 359.97438 * 5 4 3 7 7 N 1.33895 * 119.10868 * 180.02562 * 6 5 4 8 8 C 1.31291 * 121.03731 * 0.02562 * 7 6 5 9 9 C 1.50704 * 118.91009 * 179.97438 * 8 7 6 10 10 N 1.32086 * 122.18508 * 0.02562 * 8 7 6 11 11 C 1.32475 * 121.18499 * 359.97438 * 10 8 7 12 12 N 1.38324 * 120.53090 * 179.73067 * 11 10 8 13 13 C 1.46506 * 119.99962 * 355.12924 * 12 11 10 14 14 C 1.52995 * 109.47101 * 182.89886 * 13 12 11 15 15 C 1.50693 * 115.55177 * 279.96534 * 14 13 12 16 16 H 1.08005 * 119.99932 * 144.29285 * 15 14 13 17 17 C 1.37878 * 120.00466 * 324.29849 * 15 14 13 18 18 N 1.31523 * 119.99406 * 338.43801 * 17 15 14 19 19 Si 1.86797 * 120.00539 * 158.44133 * 17 15 14 20 20 H 1.48494 * 109.47343 * 89.99982 * 19 17 15 21 21 H 1.48502 * 109.46950 * 210.00190 * 19 17 15 22 22 H 1.48503 * 109.46774 * 329.99859 * 19 17 15 23 23 C 1.53004 * 117.49640 * 134.26566 * 14 13 12 24 24 C 1.53001 * 117.49837 * 65.64142 * 14 13 12 25 25 S 1.75352 * 124.30312 * 270.01924 * 3 2 1 26 26 H 1.08997 * 109.46657 * 60.00211 * 1 2 3 27 27 H 1.09002 * 109.47119 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47015 * 299.99992 * 1 2 3 29 29 H 1.08995 * 109.47495 * 239.99597 * 2 1 3 30 30 H 1.09004 * 109.47035 * 119.99815 * 2 1 3 31 31 H 1.08004 * 122.59998 * 359.95599 * 4 3 2 32 32 H 1.09005 * 109.46843 * 270.02226 * 9 8 7 33 33 H 1.09003 * 109.47065 * 30.01697 * 9 8 7 34 34 H 1.08992 * 109.47235 * 150.02353 * 9 8 7 35 35 H 0.97002 * 120.00367 * 175.12874 * 12 11 10 36 36 H 1.09000 * 109.46960 * 302.90028 * 13 12 11 37 37 H 1.09005 * 109.46842 * 62.89922 * 13 12 11 38 38 H 0.97002 * 119.99745 * 182.49162 * 18 17 15 39 39 H 1.09004 * 117.49677 * 359.97438 * 23 14 13 40 40 H 1.08994 * 117.50407 * 145.02117 * 23 14 13 41 41 H 1.08994 * 117.49886 * 214.97287 * 24 14 13 42 42 H 1.08998 * 117.49946 * 359.97438 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2801 2.1216 1.0895 5 6 2.7576 3.4705 0.8503 6 6 2.8595 3.7554 -0.5141 7 7 3.2884 4.9648 -0.8967 8 6 3.6124 5.8792 -0.0121 9 6 4.0900 7.2242 -0.4960 10 7 3.5347 5.6592 1.2880 11 6 3.1213 4.4936 1.7630 12 7 3.0504 4.2761 3.1271 13 6 3.5340 5.2987 4.0582 14 6 3.4089 4.7822 5.4929 15 6 2.0323 4.8740 6.0990 16 1 1.6852 4.1022 6.7700 17 6 1.2158 5.9432 5.7969 18 7 1.7389 7.0648 5.3518 19 14 -0.6332 5.7988 6.0199 20 1 -1.0009 6.2254 7.3939 21 1 -1.3203 6.6679 5.0311 22 1 -1.0481 4.3882 5.8118 23 6 4.6061 4.9855 6.4237 24 6 4.2786 3.5885 5.8924 25 16 2.3613 2.3527 -1.4485 26 1 -0.3632 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 2.1382 1.7223 2.0829 32 1 5.1736 7.2046 -0.6125 33 1 3.6254 7.4509 -1.4557 34 1 3.8164 7.9896 0.2300 35 1 2.6805 3.4464 3.4674 36 1 4.5788 5.5218 3.8421 37 1 2.9380 6.2043 3.9447 38 1 1.1684 7.8288 5.1737 39 1 5.4829 5.4868 6.0138 40 1 4.3981 5.1857 7.4748 41 1 3.8552 2.8698 6.5939 42 1 4.9396 3.1709 5.1329 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001307110132.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:15:08 Heat of formation + Delta-G solvation = 78.374534 kcal Electronic energy + Delta-G solvation = -23973.914646 eV Core-core repulsion = 20659.606028 eV Total energy + Delta-G solvation = -3314.308618 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 317.126 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.61186 -37.37675 -36.80275 -35.01806 -33.53616 -32.35282 -31.45573 -30.34101 -27.40500 -26.17869 -25.41056 -24.01253 -23.04938 -21.83139 -21.20437 -20.42391 -19.33751 -17.87763 -16.98917 -16.50285 -16.00337 -15.40966 -15.21035 -14.80349 -14.39399 -14.12848 -13.85873 -13.71062 -13.44716 -13.24548 -13.03639 -12.75064 -12.56062 -12.26508 -12.16331 -11.78328 -11.63333 -11.36902 -11.27987 -11.03229 -10.98970 -10.71534 -10.63648 -10.53136 -10.48049 -10.34278 -9.54463 -9.37866 -8.93976 -8.84043 -8.73218 -8.29046 -8.12393 -7.26736 -6.24943 -4.21817 0.81440 1.34748 1.62834 2.01230 2.37429 3.17134 3.27619 3.30085 3.60198 4.14934 4.24885 4.38604 4.51857 4.77414 4.91017 4.94037 5.08063 5.13193 5.17581 5.40750 5.48722 5.66805 5.67294 5.75454 5.78670 5.84933 5.89841 6.00909 6.05424 6.07290 6.19599 6.37334 6.42034 6.51120 6.52615 6.59261 6.84331 6.92954 7.19027 7.21205 7.47657 7.74908 7.83899 8.04878 8.24622 8.68691 8.75482 9.35364 10.77722 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.010902 B = 0.004666 C = 0.004055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2567.710872 B = 5999.680066 C = 6902.744124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.048 4.048 3 C -0.192 4.192 4 C -0.077 4.077 5 C -0.252 4.252 6 C 0.129 3.871 7 N -0.555 5.555 8 C 0.379 3.621 9 C -0.080 4.080 10 N -0.579 5.579 11 C 0.493 3.507 12 N -0.665 5.665 13 C 0.147 3.853 14 C 0.037 3.963 15 C -0.503 4.503 16 H 0.063 0.937 17 C 0.078 3.922 18 N -0.860 5.860 19 Si 0.884 3.116 20 H -0.279 1.279 21 H -0.284 1.284 22 H -0.272 1.272 23 C -0.190 4.190 24 C -0.211 4.211 25 S 0.132 5.868 26 H 0.056 0.944 27 H 0.059 0.941 28 H 0.060 0.940 29 H 0.073 0.927 30 H 0.082 0.918 31 H 0.142 0.858 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.087 0.913 35 H 0.409 0.591 36 H 0.038 0.962 37 H 0.124 0.876 38 H 0.266 0.734 39 H 0.066 0.934 40 H 0.081 0.919 41 H 0.077 0.923 42 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.222 -8.843 -11.371 14.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.087 4.087 3 C -0.308 4.308 4 C -0.107 4.107 5 C -0.270 4.270 6 C -0.121 4.121 7 N -0.280 5.280 8 C 0.107 3.893 9 C -0.139 4.139 10 N -0.307 5.307 11 C 0.238 3.762 12 N -0.289 5.289 13 C 0.025 3.975 14 C 0.036 3.964 15 C -0.539 4.539 16 H 0.081 0.919 17 C -0.127 4.127 18 N -0.495 5.495 19 Si 0.710 3.290 20 H -0.205 1.205 21 H -0.209 1.209 22 H -0.196 1.196 23 C -0.228 4.228 24 C -0.249 4.249 25 S 0.389 5.611 26 H 0.076 0.924 27 H 0.078 0.922 28 H 0.079 0.921 29 H 0.092 0.908 30 H 0.101 0.899 31 H 0.160 0.840 32 H 0.102 0.898 33 H 0.100 0.900 34 H 0.106 0.894 35 H 0.246 0.754 36 H 0.056 0.944 37 H 0.141 0.859 38 H 0.076 0.924 39 H 0.085 0.915 40 H 0.100 0.900 41 H 0.096 0.904 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 1.412 -7.989 -13.101 15.410 hybrid contribution -1.198 -0.767 2.224 2.640 sum 0.214 -8.756 -10.877 13.965 Atomic orbital electron populations 1.21809 0.94403 1.01815 1.02712 1.20068 0.96128 0.89366 1.03155 1.23736 1.10301 1.01066 0.95706 1.20447 0.99556 0.91400 0.99329 1.19989 1.15855 0.96877 0.94302 1.23420 0.98086 0.97254 0.93312 1.67810 1.21427 1.00250 1.38514 1.22819 0.88092 0.94738 0.83682 1.20522 1.01633 0.89789 1.01957 1.67800 1.26055 1.20603 1.16287 1.18486 0.85120 0.86873 0.85710 1.45054 1.61312 1.21768 1.00787 1.21448 0.97795 0.92319 0.85900 1.19170 0.91388 0.94904 0.90954 1.20419 0.96745 1.07890 1.28869 0.91867 1.24939 0.98730 0.94590 0.94477 1.69898 1.35441 1.01089 1.43076 0.86727 0.85696 0.78458 0.78080 1.20479 1.20945 1.19632 1.22940 1.01245 0.98253 1.00397 1.22892 1.06154 0.91831 1.03986 1.83843 1.68837 1.01558 1.06823 0.92437 0.92152 0.92110 0.90847 0.89945 0.84022 0.89827 0.89951 0.89392 0.75397 0.94353 0.85875 0.92424 0.91518 0.90034 0.90449 0.91404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 9.89 37.16 0.37 -0.98 16 2 C -0.05 -0.45 6.37 -27.88 -0.18 -0.63 16 3 C -0.19 -2.47 5.64 -36.21 -0.20 -2.67 16 4 C -0.08 -1.14 9.86 -38.78 -0.38 -1.52 16 5 C -0.25 -4.50 6.08 -105.24 -0.64 -5.14 16 6 C 0.13 2.28 7.69 -16.08 -0.12 2.15 16 7 N -0.56 -10.13 10.36 -9.47 -0.10 -10.23 16 8 C 0.38 6.84 7.64 -157.37 -1.20 5.64 16 9 C -0.08 -1.08 10.31 36.01 0.37 -0.71 16 10 N -0.58 -11.70 9.55 -9.59 -0.09 -11.79 16 11 C 0.49 9.78 7.57 -154.57 -1.17 8.61 16 12 N -0.66 -13.30 5.65 -59.81 -0.34 -13.64 16 13 C 0.15 3.31 5.38 -4.04 -0.02 3.29 16 14 C 0.04 0.84 1.73 -155.66 -0.27 0.57 16 15 C -0.50 -12.72 8.98 -34.44 -0.31 -13.03 16 16 H 0.06 1.60 7.91 -52.48 -0.41 1.19 16 17 C 0.08 2.00 5.04 -17.82 -0.09 1.91 16 18 N -0.86 -22.93 11.11 55.43 0.62 -22.32 16 19 Si 0.88 20.14 29.59 -169.99 -5.03 15.11 16 20 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 21 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 22 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 23 C -0.19 -4.09 9.88 -26.72 -0.26 -4.35 16 24 C -0.21 -4.23 9.92 -26.73 -0.27 -4.49 16 25 S 0.13 1.82 23.20 -107.50 -2.49 -0.68 16 26 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.14 1.86 7.70 -52.48 -0.40 1.45 16 32 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 33 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 34 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 35 H 0.41 7.63 7.84 -40.82 -0.32 7.31 16 36 H 0.04 0.86 7.95 -51.93 -0.41 0.45 16 37 H 0.12 3.17 5.41 -51.93 -0.28 2.89 16 38 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 39 H 0.07 1.36 8.08 -51.93 -0.42 0.94 16 40 H 0.08 1.78 8.14 -51.93 -0.42 1.36 16 41 H 0.08 1.51 8.14 -51.93 -0.42 1.08 16 42 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 LS Contribution 365.51 15.07 5.51 5.51 Total: -1.00 -28.22 365.51 -12.34 -40.57 By element: Atomic # 1 Polarization: 14.84 SS G_CDS: -6.04 Total: 8.80 kcal Atomic # 6 Polarization: -6.96 SS G_CDS: -4.38 Total: -11.34 kcal Atomic # 7 Polarization: -58.06 SS G_CDS: 0.09 Total: -57.97 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -5.03 Total: 15.11 kcal Atomic # 16 Polarization: 1.82 SS G_CDS: -2.49 Total: -0.68 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -28.22 -12.34 -40.57 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001307110132.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.942 kcal (2) G-P(sol) polarization free energy of solvation -28.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.567 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds