Wall clock time and date at job start Tue Mar 31 2020 11:15:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50704 * 109.47200 * 2 1 4 4 C 1.31884 * 124.30172 * 89.99822 * 3 2 1 5 5 C 1.45079 * 114.81197 * 179.97438 * 4 3 2 6 6 C 1.39756 * 111.99532 * 359.97438 * 5 4 3 7 7 N 1.33895 * 119.10868 * 180.02562 * 6 5 4 8 8 C 1.31291 * 121.03731 * 0.02562 * 7 6 5 9 9 C 1.50704 * 118.91009 * 179.97438 * 8 7 6 10 10 N 1.32086 * 122.18508 * 0.02562 * 8 7 6 11 11 C 1.32475 * 121.18499 * 359.97438 * 10 8 7 12 12 N 1.38324 * 120.53090 * 179.73067 * 11 10 8 13 13 C 1.46506 * 119.99962 * 355.12924 * 12 11 10 14 14 C 1.52995 * 109.47101 * 182.89886 * 13 12 11 15 15 C 1.50693 * 115.55177 * 279.96534 * 14 13 12 16 16 H 1.08005 * 119.99932 * 144.29285 * 15 14 13 17 17 C 1.37878 * 120.00466 * 324.29849 * 15 14 13 18 18 N 1.31523 * 119.99406 * 338.43801 * 17 15 14 19 19 Si 1.86797 * 120.00539 * 158.44133 * 17 15 14 20 20 H 1.48494 * 109.47343 * 89.99982 * 19 17 15 21 21 H 1.48502 * 109.46950 * 210.00190 * 19 17 15 22 22 H 1.48503 * 109.46774 * 329.99859 * 19 17 15 23 23 C 1.53004 * 117.49640 * 134.26566 * 14 13 12 24 24 C 1.53001 * 117.49837 * 65.64142 * 14 13 12 25 25 S 1.75352 * 124.30312 * 270.01924 * 3 2 1 26 26 H 1.08997 * 109.46657 * 60.00211 * 1 2 3 27 27 H 1.09002 * 109.47119 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47015 * 299.99992 * 1 2 3 29 29 H 1.08995 * 109.47495 * 239.99597 * 2 1 3 30 30 H 1.09004 * 109.47035 * 119.99815 * 2 1 3 31 31 H 1.08004 * 122.59998 * 359.95599 * 4 3 2 32 32 H 1.09005 * 109.46843 * 270.02226 * 9 8 7 33 33 H 1.09003 * 109.47065 * 30.01697 * 9 8 7 34 34 H 1.08992 * 109.47235 * 150.02353 * 9 8 7 35 35 H 0.97002 * 120.00367 * 175.12874 * 12 11 10 36 36 H 1.09000 * 109.46960 * 302.90028 * 13 12 11 37 37 H 1.09005 * 109.46842 * 62.89922 * 13 12 11 38 38 H 0.97002 * 119.99745 * 182.49162 * 18 17 15 39 39 H 1.09004 * 117.49677 * 359.97438 * 23 14 13 40 40 H 1.08994 * 117.50407 * 145.02117 * 23 14 13 41 41 H 1.08994 * 117.49886 * 214.97287 * 24 14 13 42 42 H 1.08998 * 117.49946 * 359.97438 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2801 2.1216 1.0895 5 6 2.7576 3.4705 0.8503 6 6 2.8595 3.7554 -0.5141 7 7 3.2884 4.9648 -0.8967 8 6 3.6124 5.8792 -0.0121 9 6 4.0900 7.2242 -0.4960 10 7 3.5347 5.6592 1.2880 11 6 3.1213 4.4936 1.7630 12 7 3.0504 4.2761 3.1271 13 6 3.5340 5.2987 4.0582 14 6 3.4089 4.7822 5.4929 15 6 2.0323 4.8740 6.0990 16 1 1.6852 4.1022 6.7700 17 6 1.2158 5.9432 5.7969 18 7 1.7389 7.0648 5.3518 19 14 -0.6332 5.7988 6.0199 20 1 -1.0009 6.2254 7.3939 21 1 -1.3203 6.6679 5.0311 22 1 -1.0481 4.3882 5.8118 23 6 4.6061 4.9855 6.4237 24 6 4.2786 3.5885 5.8924 25 16 2.3613 2.3527 -1.4485 26 1 -0.3632 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 2.1382 1.7223 2.0829 32 1 5.1736 7.2046 -0.6125 33 1 3.6254 7.4509 -1.4557 34 1 3.8164 7.9896 0.2300 35 1 2.6805 3.4464 3.4674 36 1 4.5788 5.5218 3.8421 37 1 2.9380 6.2043 3.9447 38 1 1.1684 7.8288 5.1737 39 1 5.4829 5.4868 6.0138 40 1 4.3981 5.1857 7.4748 41 1 3.8552 2.8698 6.5939 42 1 4.9396 3.1709 5.1329 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001307110132.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:15:07 Heat of formation + Delta-G solvation = 65.095677 kcal Electronic energy + Delta-G solvation = -23974.490460 eV Core-core repulsion = 20659.606028 eV Total energy + Delta-G solvation = -3314.884432 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 317.126 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.96377 -39.05836 -37.91440 -36.52792 -34.58409 -34.28144 -32.84676 -31.45612 -28.69256 -27.82195 -27.10724 -25.11570 -24.34509 -23.18264 -22.78789 -21.54706 -21.10944 -19.20494 -18.45360 -18.12660 -17.24761 -16.80640 -16.73950 -16.48927 -15.79756 -15.40095 -15.19221 -14.84824 -14.68751 -14.58424 -14.28024 -14.20968 -13.81552 -13.59408 -13.37709 -13.20537 -12.97120 -12.88331 -12.48546 -12.43799 -12.31602 -12.27031 -12.11661 -11.95083 -11.78103 -11.63966 -11.32874 -11.19311 -10.67261 -10.29242 -10.16340 -9.97031 -9.43337 -8.66388 -8.18046 -6.19603 -0.45373 0.15741 0.21295 0.86754 1.18755 1.34774 1.41293 1.48213 2.12592 2.36124 2.76834 2.92843 3.14452 3.38470 3.51195 3.67524 3.86769 3.93646 4.20285 4.25804 4.43752 4.44819 4.48666 4.66891 4.72487 4.73449 4.74171 4.82336 4.84799 4.86525 4.91165 5.06806 5.08312 5.10137 5.21552 5.31785 5.39510 5.41347 5.51771 5.57132 5.78085 5.93917 6.18808 6.33850 6.59166 6.78892 7.32751 7.38738 8.82525 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.010902 B = 0.004666 C = 0.004055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2567.710872 B = 5999.680066 C = 6902.744124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.049 4.049 3 C -0.170 4.170 4 C -0.102 4.102 5 C -0.257 4.257 6 C 0.092 3.908 7 N -0.560 5.560 8 C 0.360 3.640 9 C -0.075 4.075 10 N -0.607 5.607 11 C 0.473 3.527 12 N -0.668 5.668 13 C 0.168 3.832 14 C 0.010 3.990 15 C -0.511 4.511 16 H 0.059 0.941 17 C 0.038 3.962 18 N -0.886 5.886 19 Si 0.935 3.065 20 H -0.275 1.275 21 H -0.291 1.291 22 H -0.265 1.265 23 C -0.194 4.194 24 C -0.180 4.180 25 S 0.177 5.823 26 H 0.053 0.947 27 H 0.082 0.918 28 H 0.048 0.952 29 H 0.093 0.907 30 H 0.099 0.901 31 H 0.156 0.844 32 H 0.101 0.899 33 H 0.099 0.901 34 H 0.085 0.915 35 H 0.414 0.586 36 H 0.029 0.971 37 H 0.089 0.911 38 H 0.262 0.738 39 H 0.074 0.926 40 H 0.074 0.926 41 H 0.086 0.914 42 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.828 -11.342 -12.483 16.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.088 4.088 3 C -0.287 4.287 4 C -0.131 4.131 5 C -0.276 4.276 6 C -0.157 4.157 7 N -0.284 5.284 8 C 0.088 3.912 9 C -0.134 4.134 10 N -0.336 5.336 11 C 0.220 3.780 12 N -0.295 5.295 13 C 0.045 3.955 14 C 0.009 3.991 15 C -0.548 4.548 16 H 0.077 0.923 17 C -0.164 4.164 18 N -0.523 5.523 19 Si 0.761 3.239 20 H -0.201 1.201 21 H -0.217 1.217 22 H -0.189 1.189 23 C -0.233 4.233 24 C -0.217 4.217 25 S 0.435 5.565 26 H 0.072 0.928 27 H 0.101 0.899 28 H 0.067 0.933 29 H 0.111 0.889 30 H 0.117 0.883 31 H 0.173 0.827 32 H 0.120 0.880 33 H 0.118 0.882 34 H 0.104 0.896 35 H 0.251 0.749 36 H 0.048 0.952 37 H 0.107 0.893 38 H 0.072 0.928 39 H 0.092 0.908 40 H 0.093 0.907 41 H 0.104 0.896 42 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 1.017 -10.511 -14.245 17.732 hybrid contribution -1.075 -0.096 2.461 2.688 sum -0.058 -10.607 -11.784 15.855 Atomic orbital electron populations 1.21811 0.93790 1.03106 1.01970 1.20275 0.96479 0.87081 1.04973 1.24294 1.07409 1.02226 0.94752 1.20555 1.01373 0.90418 1.00762 1.20237 1.15441 0.97795 0.94086 1.24069 0.98885 0.98267 0.94482 1.67908 1.21333 1.00672 1.38538 1.23581 0.88187 0.96271 0.83196 1.20630 1.02784 0.87477 1.02470 1.67813 1.26887 1.21324 1.17607 1.18753 0.85796 0.87668 0.85811 1.44790 1.62500 1.21479 1.00692 1.20940 0.96480 0.91802 0.86324 1.19199 0.91043 0.97676 0.91204 1.20643 0.98062 1.07385 1.28678 0.92280 1.25515 1.01809 0.94436 0.94687 1.70019 1.36255 1.01537 1.44451 0.85915 0.81871 0.78385 0.77747 1.20074 1.21747 1.18930 1.22933 1.00814 0.99827 0.99718 1.22865 1.04414 0.90910 1.03557 1.83686 1.67380 0.99212 1.06247 0.92797 0.89915 0.93279 0.88852 0.88306 0.82656 0.88019 0.88205 0.89636 0.74871 0.95225 0.89308 0.92828 0.90768 0.90737 0.89567 0.89673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.20 9.89 71.98 0.71 -1.49 16 2 C -0.05 -0.75 6.37 29.85 0.19 -0.56 16 3 C -0.17 -3.95 5.64 24.86 0.14 -3.81 16 4 C -0.10 -2.85 9.86 23.20 0.23 -2.62 16 5 C -0.26 -9.16 6.08 -20.26 -0.12 -9.28 16 6 C 0.09 3.19 7.69 84.75 0.65 3.84 16 7 N -0.56 -20.40 10.36 -183.87 -1.90 -22.30 16 8 C 0.36 13.17 7.64 138.81 1.06 14.23 16 9 C -0.08 -2.01 10.31 71.24 0.73 -1.28 16 10 N -0.61 -25.31 9.55 -184.26 -1.76 -27.07 16 11 C 0.47 19.21 7.57 133.95 1.01 20.22 16 12 N -0.67 -27.22 5.65 -343.15 -1.94 -29.16 16 13 C 0.17 7.74 5.38 86.38 0.46 8.20 16 14 C 0.01 0.44 1.73 -52.93 -0.09 0.35 16 15 C -0.51 -25.99 8.98 25.60 0.23 -25.76 16 16 H 0.06 2.98 7.91 -2.91 -0.02 2.96 16 17 C 0.04 1.97 5.04 84.65 0.43 2.40 16 18 N -0.89 -48.64 11.11 21.45 0.24 -48.40 16 19 Si 0.93 41.74 29.59 68.60 2.03 43.77 16 20 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 21 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 22 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 23 C -0.19 -8.31 9.88 30.60 0.30 -8.01 16 24 C -0.18 -6.96 9.92 30.60 0.30 -6.66 16 25 S 0.18 4.49 23.20 -56.49 -1.31 3.18 16 26 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 27 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 28 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.10 1.28 8.14 -2.38 -0.02 1.26 16 31 H 0.16 3.84 7.70 -2.91 -0.02 3.82 16 32 H 0.10 2.31 8.14 -2.38 -0.02 2.29 16 33 H 0.10 2.26 8.14 -2.39 -0.02 2.25 16 34 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 35 H 0.41 15.52 7.84 -92.71 -0.73 14.79 16 36 H 0.03 1.37 7.95 -2.39 -0.02 1.35 16 37 H 0.09 4.77 5.41 -2.38 -0.01 4.76 16 38 H 0.26 13.95 8.31 -92.71 -0.77 13.18 16 39 H 0.07 3.02 8.08 -2.39 -0.02 3.00 16 40 H 0.07 3.25 8.14 -2.39 -0.02 3.23 16 41 H 0.09 3.18 8.14 -2.39 -0.02 3.16 16 42 H 0.08 3.00 8.14 -2.39 -0.02 2.98 16 Total: -1.00 -61.74 365.51 1.91 -59.83 By element: Atomic # 1 Polarization: 30.03 SS G_CDS: 0.31 Total: 30.34 kcal Atomic # 6 Polarization: -16.45 SS G_CDS: 6.24 Total: -10.20 kcal Atomic # 7 Polarization: -121.55 SS G_CDS: -5.36 Total: -126.92 kcal Atomic # 14 Polarization: 41.74 SS G_CDS: 2.03 Total: 43.77 kcal Atomic # 16 Polarization: 4.49 SS G_CDS: -1.31 Total: 3.18 kcal Total: -61.74 1.91 -59.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001307110132.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.922 kcal (2) G-P(sol) polarization free energy of solvation -61.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.826 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds