Wall clock time and date at job start Tue Mar 31 2020 11:15:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50708 * 109.47141 * 2 1 4 4 C 1.38315 * 119.87865 * 269.72970 * 3 2 1 5 5 C 1.38020 * 120.12337 * 179.72411 * 4 3 2 6 6 C 1.39341 * 119.87116 * 0.54842 * 5 4 3 7 7 C 1.48389 * 120.11840 * 179.70798 * 6 5 4 8 8 N 1.31380 * 125.55333 * 180.02562 * 7 6 5 9 9 N 1.40415 * 106.92768 * 179.97438 * 8 7 6 10 10 H 0.97001 * 126.74634 * 180.02562 * 9 8 7 11 11 C 1.35166 * 106.50131 * 0.02562 * 9 8 7 12 12 S 1.76196 * 125.98293 * 179.97438 * 11 9 8 13 13 C 1.80995 * 100.00335 * 179.97438 * 12 11 9 14 14 C 1.52999 * 109.47455 * 180.02562 * 13 12 11 15 15 C 1.53001 * 109.47265 * 180.02562 * 14 13 12 16 16 C 1.50702 * 109.47199 * 179.97438 * 15 14 13 17 17 H 1.07996 * 119.99886 * 359.97438 * 16 15 14 18 18 C 1.37872 * 120.00024 * 179.97438 * 16 15 14 19 19 N 1.31521 * 120.00079 * 180.02562 * 18 16 15 20 20 Si 1.86796 * 120.00142 * 0.02562 * 18 16 15 21 21 H 1.48500 * 109.47264 * 89.99670 * 20 18 16 22 22 H 1.48505 * 109.47416 * 210.00166 * 20 18 16 23 23 H 1.48500 * 109.47025 * 329.99919 * 20 18 16 24 24 N 1.31507 * 108.03882 * 359.72975 * 11 9 8 25 25 C 1.39344 * 119.76070 * 359.72305 * 6 5 4 26 26 C 1.38015 * 119.87591 * 0.02562 * 25 6 5 27 27 H 1.09002 * 109.47153 * 299.99670 * 1 2 3 28 28 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47261 * 59.99842 * 1 2 3 30 30 H 1.08996 * 109.47853 * 120.00301 * 2 1 3 31 31 H 1.09002 * 109.47153 * 240.00330 * 2 1 3 32 32 H 1.08007 * 119.94154 * 359.97438 * 4 3 2 33 33 H 1.07996 * 120.06638 * 180.27498 * 5 4 3 34 34 H 1.08995 * 109.47267 * 300.00248 * 13 12 11 35 35 H 1.08997 * 109.47171 * 59.99991 * 13 12 11 36 36 H 1.09001 * 109.46960 * 299.99830 * 14 13 12 37 37 H 1.08997 * 109.47139 * 59.99726 * 14 13 12 38 38 H 1.09001 * 109.46670 * 299.99612 * 15 14 13 39 39 H 1.08999 * 109.47075 * 59.99697 * 15 14 13 40 40 H 0.96993 * 120.00048 * 180.02562 * 19 18 16 41 41 H 1.07996 * 120.05980 * 179.97438 * 25 6 5 42 42 H 1.08000 * 119.93873 * 179.97438 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2674 2.0686 -1.1993 5 6 2.7220 3.3718 -1.2052 6 6 2.9552 4.0309 0.0001 7 6 3.4502 5.4298 0.0001 8 7 3.7054 6.1499 1.0690 9 7 4.1497 7.4041 0.6205 10 1 4.4166 8.1563 1.1718 11 6 4.1323 7.3571 -0.7302 12 16 4.5943 8.6643 -1.8175 13 6 4.3098 7.8606 -3.4141 14 6 4.6543 8.8335 -4.5435 15 6 4.4132 8.1542 -5.8931 16 6 4.7520 9.1128 -7.0056 17 1 5.1036 10.1071 -6.7732 18 6 4.6129 8.7203 -8.3199 19 7 4.9091 9.5567 -9.2908 20 14 4.0040 7.0007 -8.7218 21 1 2.5229 7.0123 -8.8282 22 1 4.5896 6.5572 -10.0125 23 1 4.4155 6.0655 -7.6443 24 7 3.7152 6.1632 -1.0908 25 6 2.7221 3.3717 1.2054 26 6 2.2625 2.0703 1.1994 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 2.0909 1.5551 -2.1329 33 1 2.9010 3.8781 -2.1422 34 1 4.9406 6.9752 -3.4927 35 1 3.2626 7.5686 -3.4924 36 1 4.0237 9.7191 -4.4651 37 1 5.7016 9.1251 -4.4650 38 1 5.0435 7.2684 -5.9717 39 1 3.3658 7.8630 -5.9713 40 1 4.8109 9.2807 -10.2155 41 1 2.9015 3.8778 2.1423 42 1 2.0818 1.5582 2.1330 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317690875.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:15:40 Heat of formation + Delta-G solvation = 80.825178 kcal Electronic energy + Delta-G solvation = -22155.695901 eV Core-core repulsion = 18841.493551 eV Total energy + Delta-G solvation = -3314.202350 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 317.126 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.06574 -39.51901 -34.85416 -34.71870 -32.71363 -32.13860 -31.76076 -31.06341 -29.24652 -28.13675 -24.81606 -24.00300 -23.12186 -22.28603 -21.97118 -20.45401 -20.27144 -18.84672 -16.84636 -16.59453 -16.44466 -15.86259 -15.57000 -15.43613 -14.79220 -14.68501 -14.16034 -13.99435 -13.89918 -13.54733 -13.49863 -12.81021 -12.70256 -12.43467 -12.29239 -12.18800 -12.12971 -11.59673 -11.48663 -11.23679 -11.11928 -10.95218 -10.69851 -10.66634 -10.42833 -10.27291 -10.02440 -9.82878 -9.71098 -9.26112 -9.15861 -8.68427 -8.57416 -7.86251 -6.07815 -4.06984 0.62764 0.92245 1.20309 1.45736 2.08635 2.65268 2.70328 3.29708 3.37490 3.40738 3.68252 3.97137 4.37366 4.42485 4.45929 4.59137 4.79962 4.93794 5.01300 5.19660 5.22652 5.25022 5.32807 5.33338 5.37156 5.53113 5.60302 5.64957 5.81866 5.84237 5.89110 5.91826 5.99498 6.26030 6.27354 6.31686 6.36516 6.38981 6.66840 6.71282 6.71511 7.17860 7.30812 7.72426 7.74575 8.47998 8.96073 9.53824 11.05357 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.011204 B = 0.002834 C = 0.002283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2498.603366 B = 9878.851194 C =12262.225310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.087 4.087 3 C -0.069 4.069 4 C -0.122 4.122 5 C -0.070 4.070 6 C -0.019 4.019 7 C 0.277 3.723 8 N -0.306 5.306 9 N -0.468 5.468 10 H 0.444 0.556 11 C 0.272 3.728 12 S -0.008 6.008 13 C -0.092 4.092 14 C -0.092 4.092 15 C -0.005 4.005 16 C -0.523 4.523 17 H 0.073 0.927 18 C 0.067 3.933 19 N -0.902 5.902 20 Si 0.879 3.121 21 H -0.276 1.276 22 H -0.287 1.287 23 H -0.264 1.264 24 N -0.529 5.529 25 C -0.081 4.081 26 C -0.124 4.124 27 H 0.056 0.944 28 H 0.058 0.942 29 H 0.057 0.943 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.128 0.872 33 H 0.137 0.863 34 H 0.095 0.905 35 H 0.095 0.905 36 H 0.066 0.934 37 H 0.066 0.934 38 H 0.020 0.980 39 H 0.016 0.984 40 H 0.264 0.736 41 H 0.130 0.870 42 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.679 -14.895 23.144 28.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.124 4.124 3 C -0.070 4.070 4 C -0.140 4.140 5 C -0.090 4.090 6 C -0.022 4.022 7 C -0.005 4.005 8 N -0.136 5.136 9 N -0.188 5.188 10 H 0.291 0.709 11 C -0.114 4.114 12 S 0.221 5.779 13 C -0.240 4.240 14 C -0.132 4.132 15 C -0.045 4.045 16 C -0.561 4.561 17 H 0.091 0.909 18 C -0.134 4.134 19 N -0.540 5.540 20 Si 0.706 3.294 21 H -0.202 1.202 22 H -0.213 1.213 23 H -0.189 1.189 24 N -0.262 5.262 25 C -0.101 4.101 26 C -0.142 4.142 27 H 0.075 0.925 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.091 0.909 31 H 0.092 0.908 32 H 0.146 0.854 33 H 0.155 0.845 34 H 0.114 0.886 35 H 0.114 0.886 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.038 0.962 39 H 0.034 0.966 40 H 0.073 0.927 41 H 0.148 0.852 42 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -5.406 -14.152 23.606 28.049 hybrid contribution -0.470 -1.267 -0.284 1.381 sum -5.876 -15.419 23.322 28.569 Atomic orbital electron populations 1.21754 0.94538 1.01781 1.02418 1.20588 0.96323 0.92485 1.03044 1.20064 0.97462 0.96262 0.93191 1.21006 1.00601 0.94571 0.97847 1.21279 0.95768 0.94112 0.97819 1.17436 1.02671 0.87694 0.94352 1.22299 0.97341 0.94964 0.85896 1.78033 1.23050 0.91236 1.21319 1.47816 1.52932 1.13330 1.04768 0.70902 1.26544 0.98795 0.98622 0.87426 1.85902 1.81294 1.11112 0.99584 1.23961 1.06605 1.02655 0.90814 1.21387 1.01866 0.97053 0.92850 1.19551 0.96659 0.96738 0.91511 1.21075 1.44948 1.00572 0.89506 0.90894 1.25016 0.94814 0.97225 0.96350 1.69909 1.48937 1.35608 0.99594 0.86787 0.79319 0.85335 0.77941 1.20215 1.21350 1.18860 1.71084 1.23550 1.01558 1.29962 1.21156 0.97264 0.94465 0.97234 1.20906 1.01085 0.94514 0.97729 0.92508 0.92338 0.92360 0.90927 0.90791 0.85410 0.84480 0.88602 0.88614 0.91534 0.91503 0.96164 0.96603 0.92657 0.85227 0.85641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 9.89 37.16 0.37 -0.52 16 2 C -0.09 -0.56 6.06 -27.88 -0.17 -0.73 16 3 C -0.07 -0.61 5.14 -104.56 -0.54 -1.14 16 4 C -0.12 -1.20 9.68 -39.63 -0.38 -1.58 16 5 C -0.07 -0.83 9.69 -39.25 -0.38 -1.21 16 6 C -0.02 -0.24 5.88 -104.90 -0.62 -0.86 16 7 C 0.28 4.06 7.77 -156.63 -1.22 2.85 16 8 N -0.31 -4.26 12.40 32.10 0.40 -3.86 16 9 N -0.47 -5.69 7.47 30.44 0.23 -5.46 16 10 H 0.44 3.79 8.96 -182.36 -1.63 2.16 16 11 C 0.27 3.78 8.30 -89.42 -0.74 3.04 16 12 S -0.01 -0.10 22.31 -107.50 -2.40 -2.50 16 13 C -0.09 -1.41 5.21 37.16 0.19 -1.22 16 14 C -0.09 -1.68 5.16 -26.73 -0.14 -1.82 16 15 C -0.01 -0.11 4.04 -27.88 -0.11 -0.23 16 16 C -0.52 -14.49 9.66 -34.44 -0.33 -14.82 16 17 H 0.07 2.17 7.99 -52.49 -0.42 1.75 16 18 C 0.07 1.93 5.47 -17.82 -0.10 1.84 16 19 N -0.90 -27.43 13.96 55.43 0.77 -26.66 16 20 Si 0.88 21.31 27.47 -169.99 -4.67 16.64 16 21 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 22 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 23 H -0.26 -6.12 6.54 56.52 0.37 -5.75 16 24 N -0.53 -8.20 10.19 -11.26 -0.11 -8.31 16 25 C -0.08 -0.87 9.68 -39.25 -0.38 -1.25 16 26 C -0.12 -1.11 9.68 -39.63 -0.38 -1.49 16 27 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 28 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 29 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.07 0.40 8.08 -51.93 -0.42 -0.02 16 31 H 0.07 0.43 8.08 -51.93 -0.42 0.01 16 32 H 0.13 1.03 8.06 -52.48 -0.42 0.60 16 33 H 0.14 1.70 7.83 -52.49 -0.41 1.29 16 34 H 0.10 1.49 8.14 -51.92 -0.42 1.07 16 35 H 0.10 1.49 8.14 -51.92 -0.42 1.06 16 36 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 37 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 38 H 0.02 0.46 7.20 -51.93 -0.37 0.08 16 39 H 0.02 0.35 7.57 -51.93 -0.39 -0.04 16 40 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 41 H 0.13 1.30 7.83 -52.49 -0.41 0.89 16 42 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 LS Contribution 370.82 15.07 5.59 5.59 Total: -1.00 -31.85 370.82 -12.58 -44.43 By element: Atomic # 1 Polarization: 6.74 SS G_CDS: -7.45 Total: -0.71 kcal Atomic # 6 Polarization: -14.23 SS G_CDS: -4.93 Total: -19.15 kcal Atomic # 7 Polarization: -45.58 SS G_CDS: 1.28 Total: -44.29 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -4.67 Total: 16.64 kcal Atomic # 16 Polarization: -0.10 SS G_CDS: -2.40 Total: -2.50 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -31.85 -12.58 -44.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317690875.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.256 kcal (2) G-P(sol) polarization free energy of solvation -31.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.431 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds