Wall clock time and date at job start Tue Mar 31 2020 11:15:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50708 * 109.47141 * 2 1 4 4 C 1.38315 * 119.87865 * 269.72970 * 3 2 1 5 5 C 1.38020 * 120.12337 * 179.72411 * 4 3 2 6 6 C 1.39341 * 119.87116 * 0.54842 * 5 4 3 7 7 C 1.48389 * 120.11840 * 179.70798 * 6 5 4 8 8 N 1.31380 * 125.55333 * 180.02562 * 7 6 5 9 9 N 1.40415 * 106.92768 * 179.97438 * 8 7 6 10 10 H 0.97001 * 126.74634 * 180.02562 * 9 8 7 11 11 C 1.35166 * 106.50131 * 0.02562 * 9 8 7 12 12 S 1.76196 * 125.98293 * 179.97438 * 11 9 8 13 13 C 1.80995 * 100.00335 * 179.97438 * 12 11 9 14 14 C 1.52999 * 109.47455 * 180.02562 * 13 12 11 15 15 C 1.53001 * 109.47265 * 180.02562 * 14 13 12 16 16 C 1.50702 * 109.47199 * 179.97438 * 15 14 13 17 17 H 1.07996 * 119.99886 * 359.97438 * 16 15 14 18 18 C 1.37872 * 120.00024 * 179.97438 * 16 15 14 19 19 N 1.31521 * 120.00079 * 180.02562 * 18 16 15 20 20 Si 1.86796 * 120.00142 * 0.02562 * 18 16 15 21 21 H 1.48500 * 109.47264 * 89.99670 * 20 18 16 22 22 H 1.48505 * 109.47416 * 210.00166 * 20 18 16 23 23 H 1.48500 * 109.47025 * 329.99919 * 20 18 16 24 24 N 1.31507 * 108.03882 * 359.72975 * 11 9 8 25 25 C 1.39344 * 119.76070 * 359.72305 * 6 5 4 26 26 C 1.38015 * 119.87591 * 0.02562 * 25 6 5 27 27 H 1.09002 * 109.47153 * 299.99670 * 1 2 3 28 28 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47261 * 59.99842 * 1 2 3 30 30 H 1.08996 * 109.47853 * 120.00301 * 2 1 3 31 31 H 1.09002 * 109.47153 * 240.00330 * 2 1 3 32 32 H 1.08007 * 119.94154 * 359.97438 * 4 3 2 33 33 H 1.07996 * 120.06638 * 180.27498 * 5 4 3 34 34 H 1.08995 * 109.47267 * 300.00248 * 13 12 11 35 35 H 1.08997 * 109.47171 * 59.99991 * 13 12 11 36 36 H 1.09001 * 109.46960 * 299.99830 * 14 13 12 37 37 H 1.08997 * 109.47139 * 59.99726 * 14 13 12 38 38 H 1.09001 * 109.46670 * 299.99612 * 15 14 13 39 39 H 1.08999 * 109.47075 * 59.99697 * 15 14 13 40 40 H 0.96993 * 120.00048 * 180.02562 * 19 18 16 41 41 H 1.07996 * 120.05980 * 179.97438 * 25 6 5 42 42 H 1.08000 * 119.93873 * 179.97438 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2674 2.0686 -1.1993 5 6 2.7220 3.3718 -1.2052 6 6 2.9552 4.0309 0.0001 7 6 3.4502 5.4298 0.0001 8 7 3.7054 6.1499 1.0690 9 7 4.1497 7.4041 0.6205 10 1 4.4166 8.1563 1.1718 11 6 4.1323 7.3571 -0.7302 12 16 4.5943 8.6643 -1.8175 13 6 4.3098 7.8606 -3.4141 14 6 4.6543 8.8335 -4.5435 15 6 4.4132 8.1542 -5.8931 16 6 4.7520 9.1128 -7.0056 17 1 5.1036 10.1071 -6.7732 18 6 4.6129 8.7203 -8.3199 19 7 4.9091 9.5567 -9.2908 20 14 4.0040 7.0007 -8.7218 21 1 2.5229 7.0123 -8.8282 22 1 4.5896 6.5572 -10.0125 23 1 4.4155 6.0655 -7.6443 24 7 3.7152 6.1632 -1.0908 25 6 2.7221 3.3717 1.2054 26 6 2.2625 2.0703 1.1994 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 2.0909 1.5551 -2.1329 33 1 2.9010 3.8781 -2.1422 34 1 4.9406 6.9752 -3.4927 35 1 3.2626 7.5686 -3.4924 36 1 4.0237 9.7191 -4.4651 37 1 5.7016 9.1251 -4.4650 38 1 5.0435 7.2684 -5.9717 39 1 3.3658 7.8630 -5.9713 40 1 4.8109 9.2807 -10.2155 41 1 2.9015 3.8778 2.1423 42 1 2.0818 1.5582 2.1330 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317690875.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:15:39 Heat of formation + Delta-G solvation = 64.767673 kcal Electronic energy + Delta-G solvation = -22156.392206 eV Core-core repulsion = 18841.493551 eV Total energy + Delta-G solvation = -3314.898655 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 317.126 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.10048 -40.26606 -36.43573 -35.53987 -34.20661 -33.61370 -32.71589 -31.86089 -29.99774 -29.92971 -25.64470 -25.26917 -24.43051 -23.20921 -22.72407 -21.99444 -21.22411 -19.92974 -18.87227 -17.57398 -17.38563 -16.93930 -16.50780 -16.29357 -16.20543 -16.10514 -15.47470 -14.81115 -14.69542 -14.57310 -14.26260 -14.17345 -14.04361 -13.83821 -13.42241 -13.35582 -13.09988 -12.85814 -12.71544 -12.24547 -12.05959 -11.84189 -11.80201 -11.69247 -11.67907 -11.56178 -11.45333 -11.41931 -11.36094 -11.29408 -10.74434 -9.92949 -9.50604 -8.90753 -8.27414 -6.31744 -0.25194 -0.17025 0.43365 0.46075 0.91228 1.39191 1.40779 1.52522 1.71374 1.72069 2.38354 2.86179 3.05203 3.08390 3.38510 3.85934 3.92310 3.97561 4.00640 4.06315 4.34247 4.45150 4.49392 4.55480 4.62756 4.67978 4.73942 4.74647 4.87919 4.94476 5.03436 5.05043 5.07385 5.13737 5.16313 5.42094 5.44375 5.45430 5.48790 5.53408 5.65909 5.66271 5.81860 5.97501 6.28660 6.70954 6.76308 7.32950 8.89110 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.011204 B = 0.002834 C = 0.002283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2498.603366 B = 9878.851194 C =12262.225310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.085 4.085 3 C -0.064 4.064 4 C -0.126 4.126 5 C -0.084 4.084 6 C -0.046 4.046 7 C 0.266 3.734 8 N -0.314 5.314 9 N -0.455 5.455 10 H 0.459 0.541 11 C 0.261 3.739 12 S 0.036 5.964 13 C -0.092 4.092 14 C -0.083 4.083 15 C -0.005 4.005 16 C -0.532 4.532 17 H 0.036 0.964 18 C 0.004 3.996 19 N -0.951 5.951 20 Si 0.948 3.052 21 H -0.267 1.267 22 H -0.286 1.286 23 H -0.244 1.244 24 N -0.553 5.553 25 C -0.085 4.085 26 C -0.121 4.121 27 H 0.054 0.946 28 H 0.071 0.929 29 H 0.049 0.951 30 H 0.087 0.913 31 H 0.081 0.919 32 H 0.144 0.856 33 H 0.124 0.876 34 H 0.095 0.905 35 H 0.096 0.904 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.025 0.975 39 H 0.023 0.977 40 H 0.266 0.734 41 H 0.133 0.867 42 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.566 -17.523 24.987 31.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.122 4.122 3 C -0.065 4.065 4 C -0.144 4.144 5 C -0.104 4.104 6 C -0.049 4.049 7 C -0.015 4.015 8 N -0.145 5.145 9 N -0.178 5.178 10 H 0.309 0.691 11 C -0.125 4.125 12 S 0.264 5.736 13 C -0.241 4.241 14 C -0.122 4.122 15 C -0.045 4.045 16 C -0.570 4.570 17 H 0.054 0.946 18 C -0.193 4.193 19 N -0.592 5.592 20 Si 0.771 3.229 21 H -0.192 1.192 22 H -0.212 1.212 23 H -0.167 1.167 24 N -0.286 5.286 25 C -0.106 4.106 26 C -0.139 4.139 27 H 0.073 0.927 28 H 0.090 0.910 29 H 0.068 0.932 30 H 0.106 0.894 31 H 0.100 0.900 32 H 0.162 0.838 33 H 0.142 0.858 34 H 0.114 0.886 35 H 0.114 0.886 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.043 0.957 39 H 0.042 0.958 40 H 0.075 0.925 41 H 0.151 0.849 42 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -6.288 -16.761 25.484 31.143 hybrid contribution -0.180 -0.398 -0.778 0.892 sum -6.468 -17.159 24.707 30.768 Atomic orbital electron populations 1.21751 0.94163 1.02558 1.01956 1.20652 0.96492 0.90863 1.04237 1.20400 0.96092 0.97375 0.92669 1.21228 1.00100 0.93849 0.99185 1.21270 0.96941 0.95098 0.97122 1.17626 1.04411 0.87369 0.95456 1.22707 0.97309 0.95796 0.85711 1.77980 1.23412 0.91727 1.21394 1.47763 1.52180 1.13418 1.04422 0.69114 1.26635 0.99079 0.98630 0.88170 1.85690 1.81067 1.09536 0.97286 1.23676 1.06615 1.01953 0.91812 1.21131 1.01825 0.97251 0.92007 1.19489 0.96921 0.95900 0.92153 1.21460 1.44081 1.00100 0.91340 0.94614 1.26001 0.95164 1.01885 0.96242 1.70065 1.50860 1.38118 1.00147 0.85686 0.79063 0.79980 0.78128 1.19188 1.21173 1.16748 1.71051 1.24373 1.02282 1.30905 1.21275 0.97392 0.95249 0.96637 1.21229 0.99835 0.93782 0.99028 0.92654 0.90975 0.93177 0.89406 0.90004 0.83845 0.85803 0.88627 0.88567 0.91638 0.91644 0.95710 0.95835 0.92527 0.84930 0.82951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 9.89 71.98 0.71 -0.67 16 2 C -0.09 -0.84 6.06 29.85 0.18 -0.66 16 3 C -0.06 -0.99 5.14 -19.82 -0.10 -1.09 16 4 C -0.13 -2.31 9.68 22.24 0.22 -2.09 16 5 C -0.08 -1.99 9.69 22.48 0.22 -1.77 16 6 C -0.05 -1.17 5.88 -20.04 -0.12 -1.28 16 7 C 0.27 7.76 7.77 137.46 1.07 8.83 16 8 N -0.31 -8.55 12.40 -52.36 -0.65 -9.20 16 9 N -0.45 -10.54 7.47 -57.61 -0.43 -10.97 16 10 H 0.46 7.14 8.96 -213.12 -1.91 5.23 16 11 C 0.26 6.98 8.30 179.93 1.49 8.48 16 12 S 0.04 0.88 22.31 -56.49 -1.26 -0.38 16 13 C -0.09 -2.72 5.21 71.98 0.37 -2.34 16 14 C -0.08 -2.98 5.16 30.59 0.16 -2.82 16 15 C -0.01 -0.23 4.04 29.85 0.12 -0.11 16 16 C -0.53 -30.01 9.66 25.60 0.25 -29.76 16 17 H 0.04 2.21 7.99 -2.91 -0.02 2.19 16 18 C 0.00 0.22 5.47 84.65 0.46 0.69 16 19 N -0.95 -59.32 13.96 21.45 0.30 -59.03 16 20 Si 0.95 43.68 27.47 68.60 1.88 45.57 16 21 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 22 H -0.29 -13.01 7.11 99.48 0.71 -12.30 16 23 H -0.24 -10.37 6.54 99.48 0.65 -9.72 16 24 N -0.55 -16.92 10.19 -189.53 -1.93 -18.85 16 25 C -0.09 -1.75 9.68 22.48 0.22 -1.53 16 26 C -0.12 -1.89 9.68 22.24 0.22 -1.68 16 27 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 28 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 29 H 0.05 0.56 8.14 -2.38 -0.02 0.54 16 30 H 0.09 0.64 8.08 -2.39 -0.02 0.62 16 31 H 0.08 0.71 8.08 -2.39 -0.02 0.69 16 32 H 0.14 2.07 8.06 -2.91 -0.02 2.05 16 33 H 0.12 3.16 7.83 -2.91 -0.02 3.14 16 34 H 0.10 2.87 8.14 -2.40 -0.02 2.85 16 35 H 0.10 2.87 8.14 -2.40 -0.02 2.85 16 36 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 37 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 38 H 0.02 1.09 7.20 -2.39 -0.02 1.07 16 39 H 0.02 1.02 7.57 -2.39 -0.02 1.00 16 40 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 41 H 0.13 2.54 7.83 -2.91 -0.02 2.52 16 42 H 0.15 1.51 8.06 -2.91 -0.02 1.49 16 Total: -1.00 -69.65 370.82 2.43 -67.22 By element: Atomic # 1 Polarization: 14.40 SS G_CDS: -0.94 Total: 13.46 kcal Atomic # 6 Polarization: -33.29 SS G_CDS: 5.46 Total: -27.83 kcal Atomic # 7 Polarization: -95.33 SS G_CDS: -2.71 Total: -98.04 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 1.88 Total: 45.57 kcal Atomic # 16 Polarization: 0.88 SS G_CDS: -1.26 Total: -0.38 kcal Total: -69.65 2.43 -67.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317690875.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.985 kcal (2) G-P(sol) polarization free energy of solvation -69.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.217 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds