Wall clock time and date at job start Tue Mar 31 2020 11:15:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50706 * 109.47238 * 2 1 4 4 C 1.38321 * 119.87460 * 269.72456 * 3 2 1 5 5 C 1.38016 * 120.12066 * 179.76550 * 4 3 2 6 6 C 1.39343 * 119.87492 * 0.52614 * 5 4 3 7 7 C 1.48398 * 120.11787 * 179.70247 * 6 5 4 8 8 N 1.31380 * 125.55097 * 180.02562 * 7 6 5 9 9 N 1.40410 * 106.92911 * 180.02562 * 8 7 6 10 10 H 0.97001 * 126.75217 * 180.02562 * 9 8 7 11 11 C 1.35169 * 106.49560 * 359.97438 * 9 8 7 12 12 S 1.76201 * 125.97772 * 180.02562 * 11 9 8 13 13 C 1.81004 * 99.99945 * 180.02562 * 12 11 9 14 14 H 1.09003 * 109.47378 * 54.99651 * 13 12 11 15 15 C 1.53005 * 109.46839 * 294.99767 * 13 12 11 16 16 C 1.53003 * 109.47123 * 175.00006 * 13 12 11 17 17 C 1.50701 * 109.46636 * 294.99650 * 16 13 12 18 18 H 1.07998 * 120.00569 * 0.02562 * 17 16 13 19 19 C 1.37881 * 119.99387 * 179.97438 * 17 16 13 20 20 N 1.31512 * 120.00157 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99765 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47262 * 89.99942 * 21 19 17 23 23 H 1.48502 * 109.47175 * 210.00506 * 21 19 17 24 24 H 1.48508 * 109.46941 * 329.99618 * 21 19 17 25 25 N 1.31497 * 108.04246 * 359.73161 * 11 9 8 26 26 C 1.39338 * 119.75982 * 359.72995 * 6 5 4 27 27 C 1.38023 * 119.87511 * 359.97438 * 26 6 5 28 28 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46832 * 60.00314 * 1 2 3 30 30 H 1.09004 * 109.47261 * 300.00295 * 1 2 3 31 31 H 1.08998 * 109.47533 * 119.99506 * 2 1 3 32 32 H 1.08996 * 109.47853 * 239.99849 * 2 1 3 33 33 H 1.08003 * 119.93991 * 0.02562 * 4 3 2 34 34 H 1.07999 * 120.06370 * 180.25700 * 5 4 3 35 35 H 1.09003 * 109.47041 * 300.00090 * 15 13 12 36 36 H 1.08992 * 109.46960 * 59.99959 * 15 13 12 37 37 H 1.08997 * 109.47002 * 179.97438 * 15 13 12 38 38 H 1.09001 * 109.47007 * 54.99889 * 16 13 12 39 39 H 1.08996 * 109.47200 * 174.99756 * 16 13 12 40 40 H 0.97008 * 119.99604 * 179.97438 * 20 19 17 41 41 H 1.07992 * 120.06183 * 179.97438 * 26 6 5 42 42 H 1.07998 * 119.93773 * 180.02562 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.2675 2.0685 -1.1994 5 6 2.7230 3.3713 -1.2053 6 6 2.9564 4.0305 -0.0001 7 6 3.4525 5.4291 -0.0002 8 7 3.7080 6.1491 1.0686 9 7 4.1522 7.4033 0.6202 10 1 4.4193 8.1555 1.1713 11 6 4.1354 7.3559 -0.7306 12 16 4.5987 8.6626 -1.8180 13 6 4.3130 7.8591 -3.4146 14 1 3.2885 7.4893 -3.4571 15 6 5.2848 6.6887 -3.5776 16 6 4.5377 8.8694 -4.5414 17 6 3.5011 9.9597 -4.4526 18 1 2.7568 9.9348 -3.6705 19 6 3.5037 10.9896 -5.3694 20 7 4.4104 11.0201 -6.3215 21 14 2.2193 12.3414 -5.2590 22 1 2.7282 13.4385 -4.3972 23 1 1.9381 12.8693 -6.6182 24 1 0.9703 11.7909 -4.6737 25 7 3.7188 6.1619 -1.0911 26 6 2.7229 3.3715 1.2052 27 6 2.2616 2.0706 1.1993 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 0.5139 0.8900 31 1 1.8934 -0.5137 0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 2.0903 1.5552 -2.1330 34 1 2.9023 3.8775 -2.1424 35 1 6.3093 7.0585 -3.5351 36 1 5.1248 5.9691 -2.7748 37 1 5.1125 6.2045 -4.5388 38 1 5.5324 9.3049 -4.4459 39 1 4.4529 8.3650 -5.5039 40 1 4.4119 11.7445 -6.9667 41 1 2.9026 3.8775 2.1421 42 1 2.0799 1.5590 2.1329 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001322228513.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:15:44 Heat of formation + Delta-G solvation = 83.010729 kcal Electronic energy + Delta-G solvation = -22774.353221 eV Core-core repulsion = 19460.245644 eV Total energy + Delta-G solvation = -3314.107577 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 317.126 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.73762 -39.38483 -34.72763 -34.66611 -32.48135 -32.09173 -31.43676 -30.86653 -29.07319 -27.49349 -24.65776 -23.48511 -23.34835 -22.24187 -21.77881 -20.67721 -20.13680 -18.45598 -16.44174 -16.39804 -16.19310 -15.52089 -15.43067 -15.28231 -14.78509 -14.52869 -14.03020 -13.84273 -13.43845 -13.39155 -13.05858 -12.60886 -12.56149 -12.28042 -12.14435 -11.87911 -11.61649 -11.49334 -11.23050 -11.11544 -11.00627 -10.88986 -10.72134 -10.55582 -10.40806 -10.04773 -9.89584 -9.64441 -9.52177 -9.22442 -9.03604 -8.50095 -8.45241 -7.30416 -6.09984 -4.12845 0.80819 1.32529 1.47272 1.78107 2.66753 2.95968 3.02877 3.28683 3.35339 3.39261 3.84522 4.21870 4.39812 4.54810 4.59946 4.75204 4.91717 5.07962 5.08889 5.27547 5.28496 5.34700 5.45788 5.60680 5.70325 5.73090 5.76153 5.82979 5.92564 5.96568 6.05717 6.11543 6.29170 6.42869 6.48152 6.49550 6.52594 6.58068 6.78280 6.84861 6.99340 7.44743 7.49073 7.86812 8.07712 8.22266 8.92217 9.52094 11.00825 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.018184 B = 0.002739 C = 0.002590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1539.445722 B =10220.881662 C =10809.807587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.086 4.086 3 C -0.073 4.073 4 C -0.123 4.123 5 C -0.071 4.071 6 C -0.012 4.012 7 C 0.269 3.731 8 N -0.315 5.315 9 N -0.473 5.473 10 H 0.442 0.558 11 C 0.269 3.731 12 S 0.023 5.977 13 C -0.052 4.052 14 H 0.094 0.906 15 C -0.149 4.149 16 C 0.036 3.964 17 C -0.525 4.525 18 H 0.063 0.937 19 C 0.061 3.939 20 N -0.892 5.892 21 Si 0.892 3.108 22 H -0.279 1.279 23 H -0.286 1.286 24 H -0.272 1.272 25 N -0.531 5.531 26 C -0.083 4.083 27 C -0.125 4.125 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.056 0.944 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.126 0.874 34 H 0.137 0.863 35 H 0.054 0.946 36 H 0.067 0.933 37 H 0.062 0.938 38 H 0.027 0.973 39 H 0.042 0.958 40 H 0.262 0.738 41 H 0.129 0.871 42 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.661 -17.966 13.471 22.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.123 4.123 3 C -0.074 4.074 4 C -0.141 4.141 5 C -0.091 4.091 6 C -0.015 4.015 7 C -0.012 4.012 8 N -0.146 5.146 9 N -0.193 5.193 10 H 0.289 0.711 11 C -0.115 4.115 12 S 0.252 5.748 13 C -0.181 4.181 14 H 0.112 0.888 15 C -0.208 4.208 16 C -0.003 4.003 17 C -0.564 4.564 18 H 0.082 0.918 19 C -0.141 4.141 20 N -0.531 5.531 21 Si 0.720 3.280 22 H -0.205 1.205 23 H -0.212 1.212 24 H -0.197 1.197 25 N -0.264 5.264 26 C -0.103 4.103 27 C -0.143 4.143 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.090 0.910 32 H 0.091 0.909 33 H 0.144 0.856 34 H 0.155 0.845 35 H 0.073 0.927 36 H 0.085 0.915 37 H 0.081 0.919 38 H 0.045 0.955 39 H 0.060 0.940 40 H 0.072 0.928 41 H 0.147 0.853 42 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -2.340 -17.127 13.943 22.209 hybrid contribution -0.861 0.454 -0.001 0.973 sum -3.201 -16.673 13.942 21.969 Atomic orbital electron populations 1.21755 0.94629 1.01671 1.02433 1.20569 0.96255 0.92589 1.02906 1.20026 0.97901 0.96210 0.93229 1.20978 1.00764 0.94624 0.97712 1.21278 0.95886 0.94022 0.97914 1.17459 1.01975 0.87864 0.94198 1.22294 0.97682 0.94892 0.86357 1.77955 1.23602 0.91506 1.21500 1.47796 1.53387 1.13145 1.05002 0.71139 1.27179 0.97816 0.98934 0.87558 1.86327 1.80206 1.09164 0.99144 1.23678 1.02997 0.99023 0.92388 0.88815 1.22146 0.98554 0.97568 1.02492 1.19126 0.98143 0.92182 0.90863 1.21256 1.14309 1.07362 1.13455 0.91837 1.24986 0.95815 0.98113 0.95167 1.69951 1.34390 1.32684 1.16067 0.86582 0.82006 0.82116 0.77318 1.20548 1.21217 1.19715 1.71087 1.24185 1.01775 1.29368 1.21166 0.97375 0.94430 0.97350 1.20888 1.01167 0.94563 0.97646 0.92432 0.92366 0.92521 0.91027 0.90893 0.85567 0.84469 0.92687 0.91453 0.91931 0.95455 0.94005 0.92813 0.85285 0.85792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 9.89 37.16 0.37 -0.60 16 2 C -0.09 -0.60 6.06 -27.88 -0.17 -0.77 16 3 C -0.07 -0.70 5.14 -104.56 -0.54 -1.23 16 4 C -0.12 -1.29 9.68 -39.63 -0.38 -1.67 16 5 C -0.07 -0.91 9.69 -39.25 -0.38 -1.29 16 6 C -0.01 -0.17 5.88 -104.89 -0.62 -0.79 16 7 C 0.27 4.46 7.77 -156.63 -1.22 3.25 16 8 N -0.31 -5.07 12.40 32.10 0.40 -4.67 16 9 N -0.47 -7.09 7.47 30.44 0.23 -6.87 16 10 H 0.44 5.12 8.96 -182.36 -1.63 3.49 16 11 C 0.27 4.60 8.00 -89.42 -0.72 3.88 16 12 S 0.02 0.42 21.07 -107.50 -2.26 -1.84 16 13 C -0.05 -1.02 2.28 -26.73 -0.06 -1.08 16 14 H 0.09 1.94 8.14 -51.91 -0.42 1.52 16 15 C -0.15 -2.56 9.01 37.16 0.33 -2.23 16 16 C 0.04 0.86 4.44 -27.88 -0.12 0.73 16 17 C -0.53 -13.92 8.53 -34.44 -0.29 -14.21 16 18 H 0.06 1.66 7.60 -52.49 -0.40 1.27 16 19 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 20 N -0.89 -25.61 13.29 55.43 0.74 -24.88 16 21 Si 0.89 21.07 29.54 -169.99 -5.02 16.04 16 22 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 23 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 24 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 25 N -0.53 -9.39 8.29 -11.26 -0.09 -9.48 16 26 C -0.08 -1.00 9.68 -39.25 -0.38 -1.38 16 27 C -0.12 -1.24 9.68 -39.63 -0.38 -1.62 16 28 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.07 0.43 8.08 -51.93 -0.42 0.01 16 32 H 0.07 0.46 8.08 -51.93 -0.42 0.04 16 33 H 0.13 1.07 8.06 -52.48 -0.42 0.65 16 34 H 0.14 1.84 7.83 -52.49 -0.41 1.42 16 35 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.07 1.14 5.87 -51.93 -0.31 0.84 16 37 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.04 1.06 8.14 -51.93 -0.42 0.64 16 40 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 41 H 0.13 1.48 7.83 -52.49 -0.41 1.07 16 42 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 LS Contribution 368.38 15.07 5.55 5.55 Total: -1.00 -30.03 368.38 -12.48 -42.51 By element: Atomic # 1 Polarization: 8.43 SS G_CDS: -7.36 Total: 1.07 kcal Atomic # 6 Polarization: -12.79 SS G_CDS: -4.66 Total: -17.45 kcal Atomic # 7 Polarization: -47.16 SS G_CDS: 1.27 Total: -45.89 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.04 kcal Atomic # 16 Polarization: 0.42 SS G_CDS: -2.26 Total: -1.84 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -30.03 -12.48 -42.51 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322228513.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.525 kcal (2) G-P(sol) polarization free energy of solvation -30.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.515 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds