Wall clock time and date at job start Tue Mar 31 2020 11:15:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50706 * 109.47238 * 2 1 4 4 C 1.38321 * 119.87460 * 269.72456 * 3 2 1 5 5 C 1.38016 * 120.12066 * 179.76550 * 4 3 2 6 6 C 1.39343 * 119.87492 * 0.52614 * 5 4 3 7 7 C 1.48398 * 120.11787 * 179.70247 * 6 5 4 8 8 N 1.31380 * 125.55097 * 180.02562 * 7 6 5 9 9 N 1.40410 * 106.92911 * 180.02562 * 8 7 6 10 10 H 0.97001 * 126.75217 * 180.02562 * 9 8 7 11 11 C 1.35169 * 106.49560 * 359.97438 * 9 8 7 12 12 S 1.76201 * 125.97772 * 180.02562 * 11 9 8 13 13 C 1.81004 * 99.99945 * 180.02562 * 12 11 9 14 14 H 1.09003 * 109.47378 * 54.99651 * 13 12 11 15 15 C 1.53005 * 109.46839 * 294.99767 * 13 12 11 16 16 C 1.53003 * 109.47123 * 175.00006 * 13 12 11 17 17 C 1.50701 * 109.46636 * 294.99650 * 16 13 12 18 18 H 1.07998 * 120.00569 * 0.02562 * 17 16 13 19 19 C 1.37881 * 119.99387 * 179.97438 * 17 16 13 20 20 N 1.31512 * 120.00157 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99765 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47262 * 89.99942 * 21 19 17 23 23 H 1.48502 * 109.47175 * 210.00506 * 21 19 17 24 24 H 1.48508 * 109.46941 * 329.99618 * 21 19 17 25 25 N 1.31497 * 108.04246 * 359.73161 * 11 9 8 26 26 C 1.39338 * 119.75982 * 359.72995 * 6 5 4 27 27 C 1.38023 * 119.87511 * 359.97438 * 26 6 5 28 28 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46832 * 60.00314 * 1 2 3 30 30 H 1.09004 * 109.47261 * 300.00295 * 1 2 3 31 31 H 1.08998 * 109.47533 * 119.99506 * 2 1 3 32 32 H 1.08996 * 109.47853 * 239.99849 * 2 1 3 33 33 H 1.08003 * 119.93991 * 0.02562 * 4 3 2 34 34 H 1.07999 * 120.06370 * 180.25700 * 5 4 3 35 35 H 1.09003 * 109.47041 * 300.00090 * 15 13 12 36 36 H 1.08992 * 109.46960 * 59.99959 * 15 13 12 37 37 H 1.08997 * 109.47002 * 179.97438 * 15 13 12 38 38 H 1.09001 * 109.47007 * 54.99889 * 16 13 12 39 39 H 1.08996 * 109.47200 * 174.99756 * 16 13 12 40 40 H 0.97008 * 119.99604 * 179.97438 * 20 19 17 41 41 H 1.07992 * 120.06183 * 179.97438 * 26 6 5 42 42 H 1.07998 * 119.93773 * 180.02562 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.2675 2.0685 -1.1994 5 6 2.7230 3.3713 -1.2053 6 6 2.9564 4.0305 -0.0001 7 6 3.4525 5.4291 -0.0002 8 7 3.7080 6.1491 1.0686 9 7 4.1522 7.4033 0.6202 10 1 4.4193 8.1555 1.1713 11 6 4.1354 7.3559 -0.7306 12 16 4.5987 8.6626 -1.8180 13 6 4.3130 7.8591 -3.4146 14 1 3.2885 7.4893 -3.4571 15 6 5.2848 6.6887 -3.5776 16 6 4.5377 8.8694 -4.5414 17 6 3.5011 9.9597 -4.4526 18 1 2.7568 9.9348 -3.6705 19 6 3.5037 10.9896 -5.3694 20 7 4.4104 11.0201 -6.3215 21 14 2.2193 12.3414 -5.2590 22 1 2.7282 13.4385 -4.3972 23 1 1.9381 12.8693 -6.6182 24 1 0.9703 11.7909 -4.6737 25 7 3.7188 6.1619 -1.0911 26 6 2.7229 3.3715 1.2052 27 6 2.2616 2.0706 1.1993 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 0.5139 0.8900 31 1 1.8934 -0.5137 0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 2.0903 1.5552 -2.1330 34 1 2.9023 3.8775 -2.1424 35 1 6.3093 7.0585 -3.5351 36 1 5.1248 5.9691 -2.7748 37 1 5.1125 6.2045 -4.5388 38 1 5.5324 9.3049 -4.4459 39 1 4.4529 8.3650 -5.5039 40 1 4.4119 11.7445 -6.9667 41 1 2.9026 3.8775 2.1421 42 1 2.0799 1.5590 2.1329 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001322228513.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:15:43 Heat of formation + Delta-G solvation = 69.607814 kcal Electronic energy + Delta-G solvation = -22774.934415 eV Core-core repulsion = 19460.245644 eV Total energy + Delta-G solvation = -3314.688771 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 317.126 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.00872 -40.23085 -36.49297 -35.49629 -34.18266 -33.44761 -32.59954 -31.81277 -29.95192 -29.34872 -25.48751 -25.25341 -24.62561 -23.24806 -22.66479 -22.27789 -21.15688 -19.79287 -18.49957 -17.52004 -17.33616 -16.81348 -16.55474 -16.46286 -16.25567 -15.93545 -14.83899 -14.77030 -14.55049 -14.33439 -14.16321 -14.14983 -13.69731 -13.64134 -13.35504 -13.29724 -12.92791 -12.81226 -12.62065 -12.47996 -12.36419 -12.18712 -11.81490 -11.66427 -11.63377 -11.51927 -11.32417 -11.26111 -11.16958 -11.09209 -10.54318 -9.89749 -9.45253 -8.73690 -8.19504 -6.28412 -0.19411 0.04716 0.46593 0.54549 1.17301 1.42270 1.43000 1.53514 1.79236 1.81272 2.42215 2.90100 3.11617 3.16042 3.48746 3.88638 3.96369 4.09542 4.11236 4.23578 4.37139 4.48370 4.56623 4.57864 4.65996 4.70812 4.78990 4.93793 4.99795 5.06326 5.08036 5.11104 5.15579 5.18819 5.30892 5.41542 5.44521 5.49971 5.51196 5.54158 5.68828 5.78289 5.87970 6.00961 6.17236 6.80689 6.83976 7.40113 8.91779 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.018184 B = 0.002739 C = 0.002590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1539.445722 B =10220.881662 C =10809.807587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.084 4.084 3 C -0.065 4.065 4 C -0.124 4.124 5 C -0.084 4.084 6 C -0.043 4.043 7 C 0.262 3.738 8 N -0.319 5.319 9 N -0.460 5.460 10 H 0.456 0.544 11 C 0.262 3.738 12 S 0.029 5.971 13 C -0.047 4.047 14 H 0.082 0.918 15 C -0.138 4.138 16 C 0.044 3.956 17 C -0.534 4.534 18 H 0.064 0.936 19 C 0.009 3.991 20 N -0.928 5.928 21 Si 0.954 3.046 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.266 1.266 25 N -0.547 5.547 26 C -0.087 4.087 27 C -0.121 4.121 28 H 0.072 0.928 29 H 0.049 0.951 30 H 0.053 0.947 31 H 0.087 0.913 32 H 0.083 0.917 33 H 0.146 0.854 34 H 0.124 0.876 35 H 0.059 0.941 36 H 0.071 0.929 37 H 0.069 0.931 38 H 0.008 0.992 39 H 0.021 0.979 40 H 0.264 0.736 41 H 0.130 0.870 42 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.708 -19.643 15.027 25.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.121 4.121 3 C -0.066 4.066 4 C -0.142 4.142 5 C -0.104 4.104 6 C -0.046 4.046 7 C -0.019 4.019 8 N -0.150 5.150 9 N -0.182 5.182 10 H 0.305 0.695 11 C -0.123 4.123 12 S 0.257 5.743 13 C -0.177 4.177 14 H 0.101 0.899 15 C -0.197 4.197 16 C 0.005 3.995 17 C -0.573 4.573 18 H 0.082 0.918 19 C -0.190 4.190 20 N -0.568 5.568 21 Si 0.780 3.220 22 H -0.198 1.198 23 H -0.209 1.209 24 H -0.191 1.191 25 N -0.280 5.280 26 C -0.107 4.107 27 C -0.139 4.139 28 H 0.091 0.909 29 H 0.068 0.932 30 H 0.072 0.928 31 H 0.106 0.894 32 H 0.101 0.899 33 H 0.164 0.836 34 H 0.142 0.858 35 H 0.078 0.922 36 H 0.090 0.910 37 H 0.087 0.913 38 H 0.027 0.973 39 H 0.039 0.961 40 H 0.073 0.927 41 H 0.148 0.852 42 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -3.386 -18.798 15.521 24.611 hybrid contribution -0.562 0.840 -0.408 1.090 sum -3.948 -17.958 15.113 23.801 Atomic orbital electron populations 1.21754 0.94229 1.02546 1.01920 1.20642 0.96426 0.90786 1.04268 1.20398 0.96198 0.97417 0.92620 1.21224 1.00020 0.93732 0.99205 1.21271 0.96962 0.95116 0.97057 1.17631 1.04190 0.87223 0.95527 1.22802 0.97349 0.95889 0.85876 1.77928 1.23835 0.91682 1.21512 1.47770 1.52546 1.13436 1.04456 0.69454 1.26867 0.98628 0.98684 0.88130 1.86137 1.80654 1.09360 0.98156 1.23388 1.03096 0.98728 0.92449 0.89915 1.22047 0.98002 0.96587 1.03043 1.18906 0.96520 0.92411 0.91678 1.21578 1.14553 1.07934 1.13201 0.91814 1.25798 0.97750 1.00488 0.94931 1.70063 1.36126 1.33629 1.16937 0.85598 0.79657 0.79377 0.77392 1.19830 1.20927 1.19086 1.71055 1.24473 1.02120 1.30377 1.21267 0.97558 0.95324 0.96599 1.21216 0.99873 0.93700 0.99084 0.90913 0.93161 0.92797 0.89447 0.89851 0.83641 0.85828 0.92237 0.90993 0.91262 0.97323 0.96050 0.92730 0.85160 0.83006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 9.89 71.98 0.71 -0.80 16 2 C -0.08 -0.89 6.06 29.85 0.18 -0.71 16 3 C -0.07 -1.08 5.14 -19.82 -0.10 -1.19 16 4 C -0.12 -2.42 9.68 22.24 0.22 -2.20 16 5 C -0.08 -2.15 9.69 22.48 0.22 -1.93 16 6 C -0.04 -1.21 5.88 -20.04 -0.12 -1.32 16 7 C 0.26 8.67 7.77 137.46 1.07 9.74 16 8 N -0.32 -10.10 12.40 -52.35 -0.65 -10.75 16 9 N -0.46 -13.50 7.47 -57.61 -0.43 -13.93 16 10 H 0.46 10.13 8.96 -213.12 -1.91 8.22 16 11 C 0.26 8.90 8.00 179.93 1.44 10.34 16 12 S 0.03 1.05 21.07 -56.49 -1.19 -0.14 16 13 C -0.05 -1.90 2.28 30.60 0.07 -1.83 16 14 H 0.08 3.50 8.14 -2.39 -0.02 3.48 16 15 C -0.14 -4.79 9.01 71.98 0.65 -4.14 16 16 C 0.04 2.15 4.44 29.85 0.13 2.28 16 17 C -0.53 -28.70 8.53 25.60 0.22 -28.49 16 18 H 0.06 3.36 7.60 -2.91 -0.02 3.33 16 19 C 0.01 0.49 5.46 84.66 0.46 0.95 16 20 N -0.93 -54.11 13.29 21.45 0.28 -53.83 16 21 Si 0.95 43.28 29.54 68.60 2.03 45.30 16 22 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 23 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 24 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 25 N -0.55 -19.42 8.29 -189.52 -1.57 -20.99 16 26 C -0.09 -2.00 9.68 22.48 0.22 -1.78 16 27 C -0.12 -2.10 9.68 22.24 0.22 -1.89 16 28 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 29 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.05 0.59 8.14 -2.38 -0.02 0.57 16 31 H 0.09 0.70 8.08 -2.39 -0.02 0.68 16 32 H 0.08 0.75 8.08 -2.39 -0.02 0.73 16 33 H 0.15 2.19 8.06 -2.91 -0.02 2.16 16 34 H 0.12 3.41 7.83 -2.91 -0.02 3.39 16 35 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 36 H 0.07 2.45 5.87 -2.39 -0.01 2.44 16 37 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 38 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 39 H 0.02 1.13 8.14 -2.39 -0.02 1.11 16 40 H 0.26 14.57 8.31 -92.70 -0.77 13.80 16 41 H 0.13 2.86 7.83 -2.91 -0.02 2.84 16 42 H 0.15 1.76 8.06 -2.91 -0.02 1.73 16 Total: -1.00 -64.46 368.38 3.17 -61.30 By element: Atomic # 1 Polarization: 16.87 SS G_CDS: -0.88 Total: 15.99 kcal Atomic # 6 Polarization: -28.54 SS G_CDS: 5.58 Total: -22.96 kcal Atomic # 7 Polarization: -97.12 SS G_CDS: -2.37 Total: -99.49 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.30 kcal Atomic # 16 Polarization: 1.05 SS G_CDS: -1.19 Total: -0.14 kcal Total: -64.46 3.17 -61.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322228513.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.905 kcal (2) G-P(sol) polarization free energy of solvation -64.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.297 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds