Wall clock time and date at job start Tue Mar 31 2020 11:15:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50700 * 109.46952 * 2 1 4 4 C 1.38323 * 119.88075 * 89.99554 * 3 2 1 5 5 C 1.38022 * 120.11984 * 179.97438 * 4 3 2 6 6 C 1.39334 * 119.87760 * 0.02562 * 5 4 3 7 7 C 1.48394 * 120.11755 * 179.97438 * 6 5 4 8 8 N 1.31370 * 125.55513 * 359.96403 * 7 6 5 9 9 N 1.40420 * 106.92966 * 179.81663 * 8 7 6 10 10 H 0.96996 * 126.74818 * 180.22099 * 9 8 7 11 11 C 1.35164 * 106.49490 * 0.34624 * 9 8 7 12 12 S 1.76199 * 125.97862 * 179.91718 * 11 9 8 13 13 C 1.81004 * 100.00092 * 179.71372 * 12 11 9 14 14 H 1.08998 * 109.47109 * 304.99430 * 13 12 11 15 15 C 1.52997 * 109.47052 * 65.00100 * 13 12 11 16 16 C 1.53004 * 109.46784 * 184.99786 * 13 12 11 17 17 C 1.50701 * 109.47211 * 65.00334 * 16 13 12 18 18 H 1.08002 * 119.99761 * 359.97438 * 17 16 13 19 19 C 1.37871 * 119.99694 * 180.27574 * 17 16 13 20 20 N 1.31514 * 120.00482 * 359.71466 * 19 17 16 21 21 Si 1.86801 * 119.99746 * 179.72062 * 19 17 16 22 22 H 1.48504 * 109.47209 * 89.99886 * 21 19 17 23 23 H 1.48501 * 109.47358 * 209.99377 * 21 19 17 24 24 H 1.48496 * 109.47341 * 329.99989 * 21 19 17 25 25 N 1.31503 * 108.04318 * 359.64733 * 11 9 8 26 26 C 1.39336 * 119.76299 * 0.27011 * 6 5 4 27 27 C 1.38027 * 119.87183 * 359.42942 * 26 6 5 28 28 H 1.09006 * 109.47082 * 60.00719 * 1 2 3 29 29 H 1.08999 * 109.47236 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47672 * 300.00350 * 1 2 3 31 31 H 1.08995 * 109.47339 * 240.00067 * 2 1 3 32 32 H 1.08996 * 109.46966 * 119.99263 * 2 1 3 33 33 H 1.07998 * 119.93670 * 359.97438 * 4 3 2 34 34 H 1.08004 * 120.05473 * 180.02562 * 5 4 3 35 35 H 1.08998 * 109.47711 * 59.99698 * 15 13 12 36 36 H 1.09000 * 109.46991 * 180.02562 * 15 13 12 37 37 H 1.09004 * 109.46837 * 299.99581 * 15 13 12 38 38 H 1.09000 * 109.47211 * 304.99361 * 16 13 12 39 39 H 1.09007 * 109.46376 * 184.99903 * 16 13 12 40 40 H 0.96995 * 120.00207 * 179.97438 * 20 19 17 41 41 H 1.07999 * 120.06600 * 179.72463 * 26 6 5 42 42 H 1.08003 * 119.93795 * 180.27324 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2619 2.0706 1.1994 5 6 2.7224 3.3717 1.2051 6 6 2.9555 4.0308 -0.0001 7 6 3.4501 5.4299 -0.0002 8 7 3.7040 6.1504 1.0686 9 7 4.1519 7.4034 0.6201 10 1 4.4214 8.1547 1.1713 11 6 4.1309 7.3575 -0.7306 12 16 4.5937 8.6644 -1.8180 13 6 4.3106 7.8600 -3.4146 14 1 4.8740 6.9279 -3.4568 15 6 2.8188 7.5622 -3.5781 16 6 4.7722 8.7864 -4.5413 17 6 6.2639 8.9812 -4.4521 18 1 6.8264 8.4934 -3.6697 19 6 6.9097 9.7871 -5.3655 20 7 6.2248 10.3814 -6.3181 21 14 8.7576 10.0349 -5.2502 22 1 9.4477 8.9942 -6.0541 23 1 9.1105 11.3791 -5.7734 24 1 9.1838 9.9281 -3.8318 25 7 3.7102 6.1649 -1.0911 26 6 2.7167 3.3736 -1.2053 27 6 2.2621 2.0704 -1.1994 28 1 -0.3633 0.5137 -0.8901 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5137 0.8900 33 1 2.0804 1.5588 2.1329 34 1 2.9017 3.8779 2.1422 35 1 2.2554 8.4943 -3.5359 36 1 2.6483 7.0774 -4.5394 37 1 2.4899 6.9022 -2.7754 38 1 4.2734 9.7509 -4.4461 39 1 4.5209 8.3408 -5.5039 40 1 6.6791 10.9487 -6.9604 41 1 2.8914 3.8814 -2.1424 42 1 2.0808 1.5585 -2.1330 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001322228527.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:15:47 Heat of formation + Delta-G solvation = 82.984515 kcal Electronic energy + Delta-G solvation = -22772.617186 eV Core-core repulsion = 19458.508472 eV Total energy + Delta-G solvation = -3314.108714 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 317.126 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.73637 -39.38475 -34.72966 -34.66736 -32.48062 -32.09253 -31.43631 -30.86605 -29.07437 -27.49436 -24.66049 -23.48452 -23.34930 -22.24254 -21.77927 -20.67748 -20.13580 -18.45469 -16.44183 -16.39904 -16.19346 -15.52035 -15.42907 -15.28317 -14.78393 -14.52779 -14.03936 -13.84563 -13.42737 -13.39300 -13.05572 -12.68603 -12.48985 -12.27658 -12.15792 -11.87943 -11.61576 -11.49750 -11.23708 -11.11648 -11.00768 -10.88019 -10.71917 -10.55951 -10.41117 -10.05129 -9.89339 -9.64142 -9.52016 -9.22725 -9.03561 -8.50121 -8.45205 -7.30231 -6.09948 -4.12858 0.80853 1.32514 1.47366 1.78208 2.66856 2.96058 3.02908 3.28643 3.35364 3.39313 3.84539 4.21919 4.39821 4.54663 4.59954 4.75147 4.91658 5.07739 5.08485 5.27555 5.28225 5.34640 5.45486 5.60407 5.70272 5.72865 5.76018 5.82855 5.91779 5.96562 6.05721 6.11359 6.29244 6.42894 6.48140 6.49568 6.52519 6.57981 6.78000 6.84848 6.99420 7.44609 7.49106 7.86813 8.07771 8.22256 8.92202 9.52115 11.00875 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.019591 B = 0.002703 C = 0.002565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1428.907614 B =10357.699146 C =10915.626136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.086 4.086 3 C -0.073 4.073 4 C -0.125 4.125 5 C -0.083 4.083 6 C -0.012 4.012 7 C 0.269 3.731 8 N -0.315 5.315 9 N -0.473 5.473 10 H 0.442 0.558 11 C 0.269 3.731 12 S 0.023 5.977 13 C -0.052 4.052 14 H 0.094 0.906 15 C -0.148 4.148 16 C 0.036 3.964 17 C -0.525 4.525 18 H 0.063 0.937 19 C 0.061 3.939 20 N -0.892 5.892 21 Si 0.892 3.108 22 H -0.280 1.280 23 H -0.286 1.286 24 H -0.272 1.272 25 N -0.531 5.531 26 C -0.071 4.071 27 C -0.123 4.123 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.056 0.944 31 H 0.073 0.927 32 H 0.071 0.929 33 H 0.124 0.876 34 H 0.129 0.871 35 H 0.054 0.946 36 H 0.062 0.938 37 H 0.066 0.934 38 H 0.027 0.973 39 H 0.042 0.958 40 H 0.262 0.738 41 H 0.137 0.863 42 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.009 -15.362 13.473 22.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.123 4.123 3 C -0.074 4.074 4 C -0.143 4.143 5 C -0.103 4.103 6 C -0.015 4.015 7 C -0.012 4.012 8 N -0.146 5.146 9 N -0.193 5.193 10 H 0.289 0.711 11 C -0.115 4.115 12 S 0.252 5.748 13 C -0.181 4.181 14 H 0.112 0.888 15 C -0.207 4.207 16 C -0.003 4.003 17 C -0.564 4.564 18 H 0.082 0.918 19 C -0.141 4.141 20 N -0.531 5.531 21 Si 0.719 3.281 22 H -0.206 1.206 23 H -0.212 1.212 24 H -0.197 1.197 25 N -0.264 5.264 26 C -0.091 4.091 27 C -0.141 4.141 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.091 0.909 32 H 0.090 0.910 33 H 0.142 0.858 34 H 0.147 0.853 35 H 0.073 0.927 36 H 0.081 0.919 37 H 0.085 0.915 38 H 0.046 0.954 39 H 0.060 0.940 40 H 0.072 0.928 41 H 0.155 0.845 42 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -9.727 -14.501 13.951 22.350 hybrid contribution 0.961 -0.203 -0.011 0.983 sum -8.766 -14.704 13.940 22.076 Atomic orbital electron populations 1.21751 0.94642 1.01668 1.02393 1.20568 0.96234 0.92605 1.02936 1.20026 0.97920 0.96191 0.93229 1.20890 1.01181 0.94546 0.97645 1.21167 0.97361 0.94445 0.97351 1.17456 1.01940 0.87897 0.94197 1.22292 0.97738 0.94836 0.86360 1.77954 1.23527 0.91584 1.21502 1.47796 1.53270 1.13265 1.05002 0.71141 1.27181 0.97500 0.99247 0.87560 1.86333 1.79383 1.09965 0.99140 1.23676 0.99214 1.02808 0.92395 0.88809 1.22143 0.94363 1.01757 1.02478 1.19128 0.96712 0.93618 0.90859 1.21254 0.92371 1.29164 1.13582 0.91838 1.24983 0.98387 0.95511 0.95197 1.69946 1.35819 1.31169 1.16163 0.86587 0.85502 0.77459 0.78514 1.20593 1.21209 1.19651 1.71093 1.24221 1.01747 1.29361 1.21280 0.95839 0.94070 0.97913 1.20981 1.00795 0.94589 0.97712 0.92395 0.92434 0.92527 0.90879 0.91017 0.85792 0.85284 0.92682 0.91928 0.91485 0.95442 0.94017 0.92810 0.84468 0.85568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 9.89 37.16 0.37 -0.58 16 2 C -0.09 -0.60 6.06 -27.88 -0.17 -0.77 16 3 C -0.07 -0.70 5.14 -104.56 -0.54 -1.23 16 4 C -0.12 -1.24 9.68 -39.63 -0.38 -1.62 16 5 C -0.08 -1.00 9.68 -39.25 -0.38 -1.38 16 6 C -0.01 -0.17 5.88 -104.90 -0.62 -0.79 16 7 C 0.27 4.46 7.77 -156.63 -1.22 3.25 16 8 N -0.31 -5.07 12.40 32.10 0.40 -4.67 16 9 N -0.47 -7.10 7.47 30.44 0.23 -6.88 16 10 H 0.44 5.13 8.96 -182.36 -1.63 3.50 16 11 C 0.27 4.60 8.00 -89.42 -0.71 3.89 16 12 S 0.02 0.43 21.06 -107.50 -2.26 -1.84 16 13 C -0.05 -1.02 2.27 -26.73 -0.06 -1.09 16 14 H 0.09 1.94 8.14 -51.92 -0.42 1.52 16 15 C -0.15 -2.56 9.01 37.16 0.33 -2.22 16 16 C 0.04 0.86 4.44 -27.88 -0.12 0.73 16 17 C -0.53 -13.92 8.53 -34.44 -0.29 -14.21 16 18 H 0.06 1.66 7.60 -52.49 -0.40 1.27 16 19 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 20 N -0.89 -25.61 13.29 55.43 0.74 -24.88 16 21 Si 0.89 21.07 29.54 -169.99 -5.02 16.04 16 22 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 23 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 24 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 25 N -0.53 -9.39 8.31 -11.26 -0.09 -9.48 16 26 C -0.07 -0.91 9.69 -39.25 -0.38 -1.29 16 27 C -0.12 -1.29 9.68 -39.63 -0.38 -1.67 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.07 0.46 8.08 -51.93 -0.42 0.04 16 32 H 0.07 0.44 8.08 -51.93 -0.42 0.02 16 33 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 34 H 0.13 1.48 7.83 -52.48 -0.41 1.07 16 35 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.07 1.14 5.89 -51.93 -0.31 0.83 16 38 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 39 H 0.04 1.06 8.14 -51.93 -0.42 0.64 16 40 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 41 H 0.14 1.83 7.83 -52.49 -0.41 1.42 16 42 H 0.13 1.07 8.06 -52.48 -0.42 0.65 16 LS Contribution 368.40 15.07 5.55 5.55 Total: -1.00 -30.03 368.40 -12.48 -42.51 By element: Atomic # 1 Polarization: 8.41 SS G_CDS: -7.36 Total: 1.05 kcal Atomic # 6 Polarization: -12.75 SS G_CDS: -4.66 Total: -17.41 kcal Atomic # 7 Polarization: -47.18 SS G_CDS: 1.27 Total: -45.91 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.04 kcal Atomic # 16 Polarization: 0.43 SS G_CDS: -2.26 Total: -1.84 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -30.03 -12.48 -42.51 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322228527.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.497 kcal (2) G-P(sol) polarization free energy of solvation -30.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.513 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds