Wall clock time and date at job start Tue Mar 31 2020 11:15:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50700 * 109.46952 * 2 1 4 4 C 1.38323 * 119.88075 * 89.99554 * 3 2 1 5 5 C 1.38022 * 120.11984 * 179.97438 * 4 3 2 6 6 C 1.39334 * 119.87760 * 0.02562 * 5 4 3 7 7 C 1.48394 * 120.11755 * 179.97438 * 6 5 4 8 8 N 1.31370 * 125.55513 * 359.96403 * 7 6 5 9 9 N 1.40420 * 106.92966 * 179.81663 * 8 7 6 10 10 H 0.96996 * 126.74818 * 180.22099 * 9 8 7 11 11 C 1.35164 * 106.49490 * 0.34624 * 9 8 7 12 12 S 1.76199 * 125.97862 * 179.91718 * 11 9 8 13 13 C 1.81004 * 100.00092 * 179.71372 * 12 11 9 14 14 H 1.08998 * 109.47109 * 304.99430 * 13 12 11 15 15 C 1.52997 * 109.47052 * 65.00100 * 13 12 11 16 16 C 1.53004 * 109.46784 * 184.99786 * 13 12 11 17 17 C 1.50701 * 109.47211 * 65.00334 * 16 13 12 18 18 H 1.08002 * 119.99761 * 359.97438 * 17 16 13 19 19 C 1.37871 * 119.99694 * 180.27574 * 17 16 13 20 20 N 1.31514 * 120.00482 * 359.71466 * 19 17 16 21 21 Si 1.86801 * 119.99746 * 179.72062 * 19 17 16 22 22 H 1.48504 * 109.47209 * 89.99886 * 21 19 17 23 23 H 1.48501 * 109.47358 * 209.99377 * 21 19 17 24 24 H 1.48496 * 109.47341 * 329.99989 * 21 19 17 25 25 N 1.31503 * 108.04318 * 359.64733 * 11 9 8 26 26 C 1.39336 * 119.76299 * 0.27011 * 6 5 4 27 27 C 1.38027 * 119.87183 * 359.42942 * 26 6 5 28 28 H 1.09006 * 109.47082 * 60.00719 * 1 2 3 29 29 H 1.08999 * 109.47236 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47672 * 300.00350 * 1 2 3 31 31 H 1.08995 * 109.47339 * 240.00067 * 2 1 3 32 32 H 1.08996 * 109.46966 * 119.99263 * 2 1 3 33 33 H 1.07998 * 119.93670 * 359.97438 * 4 3 2 34 34 H 1.08004 * 120.05473 * 180.02562 * 5 4 3 35 35 H 1.08998 * 109.47711 * 59.99698 * 15 13 12 36 36 H 1.09000 * 109.46991 * 180.02562 * 15 13 12 37 37 H 1.09004 * 109.46837 * 299.99581 * 15 13 12 38 38 H 1.09000 * 109.47211 * 304.99361 * 16 13 12 39 39 H 1.09007 * 109.46376 * 184.99903 * 16 13 12 40 40 H 0.96995 * 120.00207 * 179.97438 * 20 19 17 41 41 H 1.07999 * 120.06600 * 179.72463 * 26 6 5 42 42 H 1.08003 * 119.93795 * 180.27324 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2619 2.0706 1.1994 5 6 2.7224 3.3717 1.2051 6 6 2.9555 4.0308 -0.0001 7 6 3.4501 5.4299 -0.0002 8 7 3.7040 6.1504 1.0686 9 7 4.1519 7.4034 0.6201 10 1 4.4214 8.1547 1.1713 11 6 4.1309 7.3575 -0.7306 12 16 4.5937 8.6644 -1.8180 13 6 4.3106 7.8600 -3.4146 14 1 4.8740 6.9279 -3.4568 15 6 2.8188 7.5622 -3.5781 16 6 4.7722 8.7864 -4.5413 17 6 6.2639 8.9812 -4.4521 18 1 6.8264 8.4934 -3.6697 19 6 6.9097 9.7871 -5.3655 20 7 6.2248 10.3814 -6.3181 21 14 8.7576 10.0349 -5.2502 22 1 9.4477 8.9942 -6.0541 23 1 9.1105 11.3791 -5.7734 24 1 9.1838 9.9281 -3.8318 25 7 3.7102 6.1649 -1.0911 26 6 2.7167 3.3736 -1.2053 27 6 2.2621 2.0704 -1.1994 28 1 -0.3633 0.5137 -0.8901 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5137 0.8900 33 1 2.0804 1.5588 2.1329 34 1 2.9017 3.8779 2.1422 35 1 2.2554 8.4943 -3.5359 36 1 2.6483 7.0774 -4.5394 37 1 2.4899 6.9022 -2.7754 38 1 4.2734 9.7509 -4.4461 39 1 4.5209 8.3408 -5.5039 40 1 6.6791 10.9487 -6.9604 41 1 2.8914 3.8814 -2.1424 42 1 2.0808 1.5585 -2.1330 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001322228527.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:15:46 Heat of formation + Delta-G solvation = 69.584404 kcal Electronic energy + Delta-G solvation = -22773.198258 eV Core-core repulsion = 19458.508472 eV Total energy + Delta-G solvation = -3314.689786 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 317.126 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.00822 -40.23060 -36.49326 -35.49690 -34.18259 -33.44710 -32.59905 -31.81207 -29.95011 -29.34932 -25.48654 -25.25411 -24.62504 -23.24829 -22.66421 -22.27809 -21.15587 -19.79245 -18.49968 -17.52257 -17.33532 -16.81080 -16.55557 -16.46322 -16.25498 -15.93422 -14.83596 -14.78324 -14.54957 -14.27085 -14.21767 -14.15058 -13.69595 -13.63889 -13.37166 -13.26943 -12.94225 -12.82125 -12.59104 -12.49503 -12.36330 -12.18641 -11.81285 -11.66316 -11.63741 -11.51880 -11.31519 -11.25946 -11.17585 -11.09498 -10.54335 -9.89699 -9.45220 -8.73673 -8.19463 -6.28402 -0.19380 0.04709 0.46585 0.54575 1.17375 1.42080 1.42970 1.53623 1.79485 1.81017 2.42197 2.90121 3.11638 3.16052 3.48788 3.88661 3.96362 4.09532 4.11275 4.23545 4.37229 4.48385 4.56604 4.58057 4.66098 4.70968 4.79050 4.93793 4.99783 5.06304 5.08181 5.11170 5.15904 5.18946 5.30656 5.41441 5.44780 5.50007 5.51279 5.54150 5.68834 5.78288 5.87927 6.00963 6.17241 6.80674 6.83983 7.40134 8.91821 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.019591 B = 0.002703 C = 0.002565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1428.907614 B =10357.699146 C =10915.626136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.085 4.085 3 C -0.065 4.065 4 C -0.121 4.121 5 C -0.087 4.087 6 C -0.043 4.043 7 C 0.262 3.738 8 N -0.319 5.319 9 N -0.460 5.460 10 H 0.456 0.544 11 C 0.262 3.738 12 S 0.028 5.972 13 C -0.047 4.047 14 H 0.083 0.917 15 C -0.138 4.138 16 C 0.044 3.956 17 C -0.534 4.534 18 H 0.064 0.936 19 C 0.009 3.991 20 N -0.928 5.928 21 Si 0.954 3.046 22 H -0.275 1.275 23 H -0.283 1.283 24 H -0.264 1.264 25 N -0.547 5.547 26 C -0.084 4.084 27 C -0.124 4.124 28 H 0.050 0.950 29 H 0.072 0.928 30 H 0.053 0.947 31 H 0.082 0.918 32 H 0.086 0.914 33 H 0.152 0.848 34 H 0.130 0.870 35 H 0.059 0.941 36 H 0.069 0.931 37 H 0.071 0.929 38 H 0.009 0.991 39 H 0.021 0.979 40 H 0.264 0.736 41 H 0.124 0.876 42 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.159 -17.372 15.022 25.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.122 4.122 3 C -0.066 4.066 4 C -0.139 4.139 5 C -0.107 4.107 6 C -0.046 4.046 7 C -0.019 4.019 8 N -0.150 5.150 9 N -0.182 5.182 10 H 0.305 0.695 11 C -0.123 4.123 12 S 0.257 5.743 13 C -0.177 4.177 14 H 0.101 0.899 15 C -0.197 4.197 16 C 0.005 3.995 17 C -0.572 4.572 18 H 0.082 0.918 19 C -0.190 4.190 20 N -0.568 5.568 21 Si 0.779 3.221 22 H -0.201 1.201 23 H -0.209 1.209 24 H -0.189 1.189 25 N -0.280 5.280 26 C -0.104 4.104 27 C -0.142 4.142 28 H 0.069 0.931 29 H 0.091 0.909 30 H 0.073 0.927 31 H 0.101 0.899 32 H 0.105 0.895 33 H 0.170 0.830 34 H 0.148 0.852 35 H 0.078 0.922 36 H 0.087 0.913 37 H 0.090 0.910 38 H 0.027 0.973 39 H 0.039 0.961 40 H 0.073 0.927 41 H 0.142 0.858 42 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -9.875 -16.508 15.521 24.717 hybrid contribution 0.938 0.302 -0.416 1.070 sum -8.937 -16.206 15.105 23.889 Atomic orbital electron populations 1.21748 0.94111 1.02553 1.01973 1.20643 0.96526 0.90784 1.04216 1.20398 0.96212 0.97394 0.92622 1.21217 0.99894 0.93683 0.99081 1.21268 0.97542 0.95339 0.96600 1.17628 1.04160 0.87256 0.95527 1.22800 0.97394 0.95837 0.85877 1.77927 1.23775 0.91742 1.21515 1.47770 1.52441 1.13550 1.04459 0.69461 1.26866 0.98327 0.98977 0.88127 1.86146 1.80126 1.09893 0.98182 1.23387 1.00594 1.01239 0.92431 0.89886 1.22044 0.92493 1.02092 1.03030 1.18908 0.95591 0.93346 0.91675 1.21576 0.93647 1.28699 1.13320 0.91809 1.25794 1.02792 0.95420 0.94965 1.70058 1.37579 1.32082 1.17038 0.85605 0.80271 0.77420 0.78790 1.20073 1.20874 1.18855 1.71061 1.24515 1.02079 1.30369 1.21273 0.96903 0.95164 0.97058 1.21226 1.00060 0.93695 0.99203 0.93075 0.90945 0.92738 0.89921 0.89514 0.83011 0.85161 0.92234 0.91252 0.91027 0.97312 0.96056 0.92731 0.85819 0.83644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 9.89 71.98 0.71 -0.74 16 2 C -0.08 -0.90 6.06 29.85 0.18 -0.72 16 3 C -0.07 -1.08 5.14 -19.82 -0.10 -1.19 16 4 C -0.12 -2.10 9.68 22.24 0.22 -1.89 16 5 C -0.09 -2.00 9.68 22.48 0.22 -1.78 16 6 C -0.04 -1.21 5.88 -20.04 -0.12 -1.32 16 7 C 0.26 8.68 7.77 137.46 1.07 9.74 16 8 N -0.32 -10.10 12.40 -52.36 -0.65 -10.75 16 9 N -0.46 -13.52 7.47 -57.61 -0.43 -13.95 16 10 H 0.46 10.16 8.96 -213.12 -1.91 8.25 16 11 C 0.26 8.91 8.00 179.93 1.44 10.35 16 12 S 0.03 1.04 21.06 -56.49 -1.19 -0.15 16 13 C -0.05 -1.90 2.27 30.59 0.07 -1.83 16 14 H 0.08 3.51 8.14 -2.40 -0.02 3.49 16 15 C -0.14 -4.78 9.01 71.98 0.65 -4.13 16 16 C 0.04 2.15 4.44 29.85 0.13 2.28 16 17 C -0.53 -28.68 8.53 25.60 0.22 -28.46 16 18 H 0.06 3.36 7.60 -2.91 -0.02 3.34 16 19 C 0.01 0.49 5.46 84.65 0.46 0.95 16 20 N -0.93 -54.12 13.29 21.45 0.28 -53.83 16 21 Si 0.95 43.26 29.54 68.60 2.03 45.29 16 22 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 23 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 24 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 25 N -0.55 -19.42 8.31 -189.53 -1.58 -20.99 16 26 C -0.08 -2.14 9.69 22.48 0.22 -1.93 16 27 C -0.12 -2.42 9.68 22.24 0.22 -2.20 16 28 H 0.05 0.58 8.14 -2.38 -0.02 0.56 16 29 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.08 0.76 8.08 -2.39 -0.02 0.74 16 32 H 0.09 0.71 8.08 -2.39 -0.02 0.69 16 33 H 0.15 1.76 8.06 -2.91 -0.02 1.73 16 34 H 0.13 2.86 7.83 -2.91 -0.02 2.84 16 35 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 36 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 37 H 0.07 2.44 5.89 -2.38 -0.01 2.42 16 38 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 39 H 0.02 1.12 8.14 -2.38 -0.02 1.10 16 40 H 0.26 14.57 8.31 -92.71 -0.77 13.80 16 41 H 0.12 3.41 7.83 -2.91 -0.02 3.39 16 42 H 0.15 2.19 8.06 -2.91 -0.02 2.16 16 Total: -1.00 -64.43 368.40 3.16 -61.27 By element: Atomic # 1 Polarization: 16.86 SS G_CDS: -0.88 Total: 15.98 kcal Atomic # 6 Polarization: -28.43 SS G_CDS: 5.58 Total: -22.86 kcal Atomic # 7 Polarization: -97.15 SS G_CDS: -2.37 Total: -99.52 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.29 kcal Atomic # 16 Polarization: 1.04 SS G_CDS: -1.19 Total: -0.15 kcal Total: -64.43 3.16 -61.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322228527.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.852 kcal (2) G-P(sol) polarization free energy of solvation -64.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.268 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds