Wall clock time and date at job start Tue Mar 31 2020 11:12:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50704 * 119.99450 * 2 1 4 4 N 1.46504 * 109.47477 * 124.99771 * 3 2 1 5 5 C 1.46504 * 119.99952 * 85.01786 * 4 3 2 6 6 C 1.50698 * 109.47015 * 95.46119 * 5 4 3 7 7 H 1.08002 * 120.00117 * 359.97438 * 6 5 4 8 8 C 1.37880 * 119.99634 * 179.97438 * 6 5 4 9 9 N 1.31510 * 119.99395 * 179.97438 * 8 6 5 10 10 Si 1.86791 * 120.00209 * 0.02562 * 8 6 5 11 11 H 1.48498 * 109.47617 * 89.99875 * 10 8 6 12 12 H 1.48498 * 109.47192 * 210.00039 * 10 8 6 13 13 H 1.48498 * 109.47293 * 329.99572 * 10 8 6 14 14 C 1.34767 * 119.99753 * 264.74691 * 4 3 2 15 15 O 1.21566 * 120.00442 * 5.58156 * 14 4 3 16 16 C 1.47842 * 120.00029 * 185.58494 * 14 4 3 17 17 N 1.34574 * 126.01837 * 354.81325 * 16 14 4 18 18 C 1.30866 * 107.28777 * 179.87142 * 17 16 14 19 19 C 1.50699 * 126.20739 * 180.14435 * 18 17 16 20 20 N 1.34894 * 107.58644 * 0.39096 * 18 17 16 21 21 C 1.40100 * 125.76801 * 179.75211 * 20 18 17 22 22 N 1.33636 * 125.59742 * 179.97438 * 21 20 18 23 23 C 1.30804 * 109.79202 * 179.97438 * 22 21 20 24 24 N 1.34435 * 108.19883 * 0.02562 * 23 22 21 25 25 H 0.96999 * 126.77733 * 179.97438 * 24 23 22 26 26 N 1.31153 * 125.59822 * 359.66578 * 21 20 18 27 27 N 1.28851 * 108.46204 * 359.75459 * 20 18 17 28 28 H 1.07992 * 120.00132 * 0.02562 * 1 2 3 29 29 H 1.08005 * 119.99239 * 180.02562 * 1 2 3 30 30 H 1.07996 * 120.00460 * 179.97438 * 2 1 3 31 31 H 1.09000 * 109.47308 * 4.99237 * 3 2 1 32 32 H 1.09006 * 109.47103 * 244.99640 * 3 2 1 33 33 H 1.09001 * 109.47177 * 215.46321 * 5 4 3 34 34 H 1.09001 * 109.46673 * 335.45827 * 5 4 3 35 35 H 0.97009 * 119.99968 * 179.97438 * 9 8 6 36 36 H 1.08999 * 109.47108 * 270.29647 * 19 18 17 37 37 H 1.09007 * 109.46961 * 30.29041 * 19 18 17 38 38 H 1.08998 * 109.47425 * 150.28696 * 19 18 17 39 39 H 1.07995 * 125.90227 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9937 1.3322 1.1315 5 6 4.3219 0.7276 1.0023 6 6 5.3235 1.7902 0.6303 7 1 5.0028 2.8136 0.5023 8 6 6.6494 1.4560 0.4532 9 7 7.5234 2.3833 0.1280 10 14 7.2040 -0.3140 0.6738 11 1 7.1079 -1.0284 -0.6245 12 1 8.6110 -0.3364 1.1481 13 1 6.3340 -0.9844 1.6732 14 6 2.6296 1.9180 2.2892 15 8 1.4960 2.3338 2.4300 16 6 3.6089 2.0552 3.3882 17 7 4.8582 1.5551 3.4020 18 6 5.4002 1.8939 4.5439 19 6 6.7955 1.5557 5.0022 20 7 4.4816 2.5961 5.2387 21 6 4.6615 3.1393 6.5175 22 7 3.7491 3.8350 7.2025 23 6 4.2424 4.1934 8.3597 24 7 5.5011 3.7283 8.4417 25 1 6.1143 3.8401 9.1850 26 7 5.7512 3.0438 7.2411 27 7 3.4107 2.6826 4.5274 28 1 -0.5400 0.9352 -0.0004 29 1 -0.5399 -0.9354 0.0004 30 1 1.8501 -0.9352 0.0004 31 1 1.3584 2.1317 0.0894 32 1 2.6213 1.4027 -0.9314 33 1 4.6085 0.2743 1.9513 34 1 4.2987 -0.0377 0.2265 35 1 8.4563 2.1483 0.0038 36 1 6.7830 0.6030 5.5317 37 1 7.4542 1.4817 4.1368 38 1 7.1584 2.3376 5.6692 39 1 3.7276 4.7642 9.1183 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327875028.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:12:20 Heat of formation + Delta-G solvation = 212.307400 kcal Electronic energy + Delta-G solvation = -26606.617274 eV Core-core repulsion = 22784.115958 eV Total energy + Delta-G solvation = -3822.501316 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.134 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.37399 -42.37241 -38.99149 -35.54540 -34.72826 -33.33802 -33.02878 -32.42500 -32.02195 -30.75958 -27.97675 -27.83128 -26.53757 -24.07313 -23.72107 -22.44897 -21.70147 -20.43799 -19.64068 -18.90515 -18.64855 -17.34549 -17.02690 -16.73174 -16.11812 -15.72980 -15.42095 -15.24566 -14.65359 -14.10584 -13.96993 -13.62465 -13.22454 -13.00264 -12.87177 -12.72223 -12.40565 -12.30584 -12.01372 -11.44373 -11.29817 -11.22933 -11.02043 -10.73128 -10.53329 -10.52253 -10.46919 -10.10670 -9.71900 -9.62622 -9.45390 -9.39623 -9.05332 -8.95087 -8.46957 -7.72986 -5.99057 -3.94452 0.80221 1.50050 1.67330 2.45543 2.50508 2.57227 2.89073 3.31510 3.39134 3.45933 3.57373 3.96724 4.03936 4.20519 4.43632 4.48545 4.83336 5.09768 5.31445 5.34761 5.38411 5.53161 5.54805 5.69382 5.80500 5.90347 6.08769 6.15394 6.28676 6.38641 6.47668 6.53572 6.67549 6.86418 6.91294 7.07823 7.12765 7.46526 7.51470 7.69402 8.08432 8.39652 8.58639 8.85689 9.03990 9.62555 11.14495 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.011572 B = 0.005304 C = 0.003895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2419.015575 B = 5278.133789 C = 7187.152974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.162 4.162 3 C 0.145 3.855 4 N -0.568 5.568 5 C 0.197 3.803 6 C -0.505 4.505 7 H 0.070 0.930 8 C 0.081 3.919 9 N -0.902 5.902 10 Si 0.866 3.134 11 H -0.280 1.280 12 H -0.287 1.287 13 H -0.259 1.259 14 C 0.616 3.384 15 O -0.541 6.541 16 C 0.180 3.820 17 N -0.406 5.406 18 C 0.231 3.769 19 C -0.073 4.073 20 N -0.240 5.240 21 C 0.470 3.530 22 N -0.521 5.521 23 C 0.287 3.713 24 N -0.472 5.472 25 H 0.450 0.550 26 N -0.298 5.298 27 N -0.242 5.242 28 H 0.097 0.903 29 H 0.093 0.907 30 H 0.108 0.892 31 H 0.084 0.916 32 H 0.092 0.908 33 H 0.068 0.932 34 H 0.025 0.975 35 H 0.261 0.739 36 H 0.087 0.913 37 H 0.103 0.897 38 H 0.091 0.909 39 H 0.237 0.763 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.689 -0.817 16.109 16.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.181 4.181 3 C 0.022 3.978 4 N -0.298 5.298 5 C 0.077 3.923 6 C -0.544 4.544 7 H 0.088 0.912 8 C -0.121 4.121 9 N -0.542 5.542 10 Si 0.694 3.306 11 H -0.206 1.206 12 H -0.213 1.213 13 H -0.183 1.183 14 C 0.400 3.600 15 O -0.417 6.417 16 C -0.101 4.101 17 N -0.130 5.130 18 C -0.044 4.044 19 C -0.132 4.132 20 N -0.034 5.034 21 C 0.100 3.900 22 N -0.250 5.250 23 C -0.013 4.013 24 N -0.193 5.193 25 H 0.297 0.703 26 N -0.133 5.133 27 N -0.077 5.077 28 H 0.116 0.884 29 H 0.111 0.889 30 H 0.126 0.874 31 H 0.102 0.898 32 H 0.110 0.890 33 H 0.086 0.914 34 H 0.043 0.957 35 H 0.071 0.929 36 H 0.105 0.895 37 H 0.122 0.878 38 H 0.110 0.890 39 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -3.302 -0.772 15.560 15.925 hybrid contribution 1.115 -0.549 0.862 1.512 sum -2.188 -1.321 16.422 16.620 Atomic orbital electron populations 1.23773 0.95815 1.01525 1.01122 1.23372 0.96177 0.99228 0.99317 1.20543 0.92241 0.95337 0.89671 1.47691 1.17078 1.54606 1.10389 1.20307 0.78401 0.94543 0.99086 1.21148 0.91778 0.95506 1.45947 0.91162 1.24681 0.96247 0.96668 0.94491 1.69914 1.02744 1.32876 1.48642 0.86989 0.78352 0.86315 0.78991 1.20586 1.21275 1.18298 1.16176 0.84356 0.78639 0.80856 1.90744 1.19119 1.50742 1.81125 1.23869 0.92875 0.99501 0.93848 1.72106 1.05513 1.21483 1.13877 1.25586 0.96155 0.94352 0.88274 1.20443 0.86633 1.02891 1.03203 1.43341 1.10836 1.39428 1.09803 1.19477 0.88957 0.95551 0.85967 1.70366 1.31453 1.18227 1.04965 1.26224 0.83685 0.95782 0.95581 1.48024 1.13921 1.41835 1.15492 0.70286 1.78290 1.19133 1.21142 0.94784 1.74603 1.07344 1.21170 1.04542 0.88437 0.88889 0.87403 0.89808 0.88956 0.91415 0.95662 0.92894 0.89480 0.87849 0.89046 0.74754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.66 14.32 29.01 0.42 -2.25 16 2 C -0.16 -2.64 9.84 -36.02 -0.35 -2.99 16 3 C 0.14 2.71 5.84 -5.19 -0.03 2.68 16 4 N -0.57 -12.68 2.46 -177.54 -0.44 -13.12 16 5 C 0.20 4.67 3.84 -5.19 -0.02 4.65 16 6 C -0.51 -13.83 8.56 -34.44 -0.29 -14.12 16 7 H 0.07 2.18 8.06 -52.49 -0.42 1.76 16 8 C 0.08 2.23 5.47 -17.82 -0.10 2.13 16 9 N -0.90 -26.81 13.96 55.43 0.77 -26.04 16 10 Si 0.87 20.56 27.47 -169.99 -4.67 15.90 16 11 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 12 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 13 H -0.26 -5.88 6.54 56.52 0.37 -5.51 16 14 C 0.62 14.68 7.63 -12.34 -0.09 14.59 16 15 O -0.54 -13.43 16.64 5.31 0.09 -13.34 16 16 C 0.18 4.26 7.57 -156.30 -1.18 3.08 16 17 N -0.41 -9.30 6.99 -8.47 -0.06 -9.36 16 18 C 0.23 4.57 7.94 -155.25 -1.23 3.34 16 19 C -0.07 -1.10 9.84 36.01 0.35 -0.75 16 20 N -0.24 -4.75 3.52 -10.92 -0.04 -4.79 16 21 C 0.47 7.64 8.74 -320.52 -2.80 4.84 16 22 N -0.52 -7.48 11.20 -14.86 -0.17 -7.64 16 23 C 0.29 2.15 13.12 -90.67 -1.19 0.96 16 24 N -0.47 -3.32 7.44 29.52 0.22 -3.10 16 25 H 0.45 1.02 8.96 -182.34 -1.63 -0.61 16 26 N -0.30 -3.76 10.41 30.08 0.31 -3.45 16 27 N -0.24 -5.49 12.03 32.08 0.39 -5.10 16 28 H 0.10 1.39 7.84 -52.49 -0.41 0.97 16 29 H 0.09 1.15 8.06 -52.48 -0.42 0.72 16 30 H 0.11 1.68 8.06 -52.49 -0.42 1.26 16 31 H 0.08 1.57 7.00 -51.93 -0.36 1.20 16 32 H 0.09 1.66 8.11 -51.93 -0.42 1.24 16 33 H 0.07 1.65 4.66 -51.93 -0.24 1.41 16 34 H 0.03 0.57 7.46 -51.93 -0.39 0.19 16 35 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 36 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 37 H 0.10 1.67 8.14 -51.93 -0.42 1.25 16 38 H 0.09 1.24 6.33 -51.93 -0.33 0.91 16 39 H 0.24 0.30 8.06 -52.49 -0.42 -0.12 16 LS Contribution 342.75 15.07 5.17 5.17 Total: -1.00 -38.45 342.75 -10.44 -48.89 By element: Atomic # 1 Polarization: 5.31 SS G_CDS: -5.49 Total: -0.19 kcal Atomic # 6 Polarization: 22.69 SS G_CDS: -6.53 Total: 16.16 kcal Atomic # 7 Polarization: -73.58 SS G_CDS: 0.99 Total: -72.59 kcal Atomic # 8 Polarization: -13.43 SS G_CDS: 0.09 Total: -13.34 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -4.67 Total: 15.90 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -38.45 -10.44 -48.89 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327875028.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 261.199 kcal (2) G-P(sol) polarization free energy of solvation -38.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 222.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.891 kcal (6) G-S(sol) free energy of system = (1) + (5) 212.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds